| 1 | PXRMLABS ; SLC/PKR - Estimate of lab entries to set up. ;8/5/03  16:20
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| 2 |  ;;2.0;CLINICAL REMINDERS;;Feb 04, 2005
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| 3 |  ;===============================================================
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| 4 | NELR() ;.
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| 5 |  N LRDFN,LRDN,LRIDT,NE,TEMP
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| 6 |  ;DBIA #4179
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| 7 |  S NE=0
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| 8 |  S LRDFN=.9
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| 9 |  F  S LRDFN=$O(^LR(LRDFN)) Q:LRDFN<1  D
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| 10 |  . S TEMP=$G(^LR(LRDFN,0))
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| 11 |  . I $P(TEMP,U,2)'=2 Q
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| 12 |  . S LRIDT=0
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| 13 |  . F  S LRIDT=$O(^LR(LRDFN,"CH",LRIDT)) Q:LRIDT<1  D
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| 14 |  .. I '$P($G(^LR(LRDFN,"CH",LRIDT,0)),U,3) Q  ; check for completed
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| 15 |  .. S LRDN=1
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| 16 |  .. F  S LRDN=$O(^LR(LRDFN,"CH",LRIDT,LRDN)) Q:LRDN<1  D
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| 17 |  ... S NE=NE+1
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| 18 |  D AP(.NE)
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| 19 |  D MICRO(.NE)
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| 20 |  Q NE
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| 21 |  ;
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| 22 |  ;===============================================================
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| 23 | AP(NE) ;
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| 24 |  N ETIOL,I,II,III,ICD,ICDX
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| 25 |  N LRDFN,ORGAN,SNOMED,SPEC,SUB,SUBS,TEMP
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| 26 |  ;DBIA #4179
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| 27 |  K ANUMS
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| 28 |  D AANUMS(.ANUMS)
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| 29 |  S LRDFN=.9
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| 30 |  F  S LRDFN=$O(^LR(LRDFN)) Q:LRDFN<1  D
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| 31 |  . S TEMP=$G(^LR(LRDFN,0))
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| 32 |  . I $P(TEMP,U,2)'=2 Q
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| 33 |  . D CYEMSP(LRDFN,.ANUMS,.NE) ; cytology, electron microscopy, sugrical path
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| 34 |  . I '+$G(^LR(LRDFN,"AU")) Q  ; date of autopsy
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| 35 |  . S NE=NE+1
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| 36 |  . S SPEC=0
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| 37 |  . F  S SPEC=$O(^LR(LRDFN,33,SPEC)) Q:SPEC<1  D
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| 38 |  .. I '$L($P($G(^LR(LRDFN,33,SPEC,0)),U)) Q
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| 39 |  .. S NE=NE+1
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| 40 |  . S ICD=0
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| 41 |  . F  S ICD=$O(^LR(LRDFN,80,ICD)) Q:ICD<1  D
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| 42 |  .. S ICDX=+$G(^LR(LRDFN,80,ICD,0))
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| 43 |  .. I 'ICDX Q
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| 44 |  .. S NE=NE+1
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| 45 |  . S I=0
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| 46 |  . F  S I=$O(^LR(LRDFN,"AY",I)) Q:I<1  D
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| 47 |  .. S ORGAN=+$G(^LR(LRDFN,"AY",I,0))
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| 48 |  .. I 'ORGAN Q
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| 49 |  .. S NE=NE+1
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| 50 |  .. F SUBS="1D","2M","3F","4P" D
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| 51 |  ... S SUB=+SUBS
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| 52 |  ... S II=0
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| 53 |  ... F  S II=$O(^LR(LRDFN,"AY",I,SUB,II)) Q:II<1  D
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| 54 |  .... S SNOMED=+$G(^LR(LRDFN,"AY",I,SUB,II,0))
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| 55 |  .... I 'SNOMED Q
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| 56 |  .... S NE=NE+1
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| 57 |  .... I SUB'=2 Q
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| 58 |  .... S III=0
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| 59 |  .... F  S III=$O(^LR(LRDFN,"AY",I,SUB,II,1,III)) Q:III<1  D
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| 60 |  ..... S ETIOL=+$G(^LR(LRDFN,"AY",I,SUB,II,1,III,0))
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| 61 |  ..... I 'ETIOL Q
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| 62 |  ..... S NE=NE+1
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| 63 |  Q
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| 64 |  ;
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| 65 | CYEMSP(LRDFN,ANUMS,NE) ;
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| 66 |  N ACC,APSUB,DATE,ERR,I,ICD,ICDX,LRIDT,NODE,ORGAN,PREP,SPEC
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| 67 |  N TEST,TESTS K TESTS
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| 68 |  ;DBIA #4179
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| 69 |  F APSUB="CY","EM","SP" D
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| 70 |  . I '$D(^LR(LRDFN,APSUB,0)) Q
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| 71 |  . S LRIDT=0
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| 72 |  . F  S LRIDT=$O(^LR(LRDFN,APSUB,LRIDT)) Q:LRIDT<1  D
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| 73 |  .. S DATE=+$G(^LR(LRDFN,APSUB,LRIDT,0))
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| 74 |  .. I 'DATE Q
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| 75 |  .. I '($P(^LR(LRDFN,APSUB,LRIDT,0),U,3)&($P(^(0),U,11))) Q
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| 76 |  .. S SPEC=0
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| 77 |  .. F  S SPEC=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC)) Q:SPEC<1  D
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| 78 |  ... I '$L($P($G(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,0)),U)) Q
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| 79 |  ... S NE=NE+1
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| 80 |  ... S PREP=0
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| 81 |  ... F  S PREP=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP)) Q:PREP<1  D
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| 82 |  .... S TEST=0
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| 83 |  .... F  S TEST=$O(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP,1,TEST)) Q:TEST<1  D
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| 84 |  ..... I '$L($P($G(^LR(LRDFN,APSUB,LRIDT,.1,SPEC,1,PREP,1,TEST,0)),U)) Q
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| 85 |  ..... S NE=NE+1
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| 86 |  .. S ACC=$P(^LR(LRDFN,APSUB,LRIDT,0),U,6)
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| 87 |  .. I $L(ACC) D
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| 88 |  ... S NODE=LRDFN_";"_APSUB_";"_LRIDT_";0"
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| 89 |  ... D ACC(.TESTS,ACC,DATE,.ANUMS,.ERR)
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| 90 |  ... I 'ERR D
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| 91 |  .... S TEST=0
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| 92 |  .... F  S TEST=$O(TESTS(TEST)) Q:TEST<1  D
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| 93 |  ..... S NE=NE+1
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| 94 |  .. S ICD=0
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| 95 |  .. F  S ICD=$O(^LR(LRDFN,APSUB,LRIDT,3,ICD)) Q:ICD<1  D
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| 96 |  ... S ICDX=+$G(^LR(LRDFN,APSUB,LRIDT,3,ICD,0))
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| 97 |  ... I 'ICDX Q
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| 98 |  ... S NE=NE+1
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| 99 |  .. S I=0
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| 100 |  .. F  S I=$O(^LR(LRDFN,APSUB,LRIDT,2,I)) Q:I<1  D
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| 101 |  ... S ORGAN=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,0))
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| 102 |  ... I 'ORGAN Q
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| 103 |  ... S NE=NE+1
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| 104 |  ... D SNOMED(LRDFN,LRIDT,DATE,APSUB,I,.NE)
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| 105 |  Q
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| 106 |  ;
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| 107 | SNOMED(LRDFN,LRIDT,DATE,APSUB,I,NE) ;
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| 108 |  N ETIOL,II,III,SNOMED,SUB,SUBS
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| 109 |  ;DBIA #4179
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| 110 |  F SUBS="1D","2M","3F","4P" D
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| 111 |  . S SUB=+SUBS
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| 112 |  . S II=0
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| 113 |  . F  S II=$O(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II)) Q:II<1  D
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| 114 |  .. S SNOMED=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,0))
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| 115 |  .. I 'SNOMED Q
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| 116 |  .. S NE=NE+1
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| 117 |  .. I SUB'=2 Q
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| 118 |  .. S III=0
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| 119 |  .. F  S III=$O(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,1,III)) Q:III<1  D
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| 120 |  ... S ETIOL=+$G(^LR(LRDFN,APSUB,LRIDT,2,I,SUB,II,1,III,0))
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| 121 |  ... I 'ETIOL Q
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| 122 |  ... S NE=NE+1
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| 123 |  Q
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| 124 |  ;
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| 125 |  ;===============================================================
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| 126 | MICRO(NE) ;
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| 127 |  N AB,ABDN,ACC,ANUMS,DATE,ERR
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| 128 |  N LRDFN,LRIDT,ORG,ORGNUM,SPEC,SUB
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| 129 |  N TB,TBDN,TEMP,TEST,TESTS
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| 130 |  ;DBIA #4179
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| 131 |  K ANUMS,TESTS
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| 132 |  D AANUMS(.ANUMS)
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| 133 |  S LRDFN=.9
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| 134 |  F  S LRDFN=$O(^LR(LRDFN)) Q:LRDFN<1  D
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| 135 |  . S TEMP=$G(^LR(LRDFN,0))
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| 136 |  . I $P(TEMP,U,2)'=2 Q
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| 137 |  . S LRIDT=0
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| 138 |  . F  S LRIDT=$O(^LR(LRDFN,"MI",LRIDT)) Q:LRIDT<1  D
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| 139 |  .. S DATE=+$G(^LR(LRDFN,"MI",LRIDT,0))
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| 140 |  .. I 'DATE Q
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| 141 |  .. S SPEC=+$P(^LR(LRDFN,"MI",LRIDT,0),U,5)
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| 142 |  .. I 'SPEC Q
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| 143 |  .. S NE=NE+1
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| 144 |  .. S ACC=$P(^LR(LRDFN,"MI",LRIDT,0),U,6)
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| 145 |  .. I $L(ACC) D
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| 146 |  ... D ACC(.TESTS,ACC,DATE,.ANUMS,.ERR)
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| 147 |  ... I 'ERR D
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| 148 |  .... S TEST=0
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| 149 |  .... F  S TEST=$O(TESTS(TEST)) Q:TEST<1  D
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| 150 |  ..... S NE=NE+1
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| 151 |  .. I $G(^LR(LRDFN,"MI",LRIDT,1)) D
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| 152 |  ... S ORGNUM=0
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| 153 |  ... F  S ORGNUM=$O(^LR(LRDFN,"MI",LRIDT,3,ORGNUM)) Q:ORGNUM<1  D
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| 154 |  .... S ORG=+$G(^LR(LRDFN,"MI",LRIDT,3,ORGNUM,0))
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| 155 |  .... I 'ORG Q
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| 156 |  .... S NE=NE+1
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| 157 |  .... S ABDN=1
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| 158 |  .... F  S ABDN=$O(^LR(LRDFN,"MI",LRIDT,3,ORGNUM,ABDN)) Q:ABDN<1  D
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| 159 |  ..... S AB=+$G(^TMP("LRPXSXRB",$J,"AB",ABDN))
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| 160 |  ..... I 'AB Q
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| 161 |  ..... S NE=NE+1
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| 162 |  .. F SUB=6,9,12,17 D
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| 163 |  ... I '$G(^LR(LRDFN,"MI",LRIDT,(SUB-1))) Q
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| 164 |  ... S ORGNUM=0
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| 165 |  ... F  S ORGNUM=$O(^LR(LRDFN,"MI",LRIDT,SUB,ORGNUM)) Q:ORGNUM<1  D
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| 166 |  .... S ORG=+$G(^LR(LRDFN,"MI",LRIDT,SUB,ORGNUM,0))
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| 167 |  .... I 'ORG Q
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| 168 |  .... S NE=NE+1
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| 169 |  .... I SUB'=12 Q
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| 170 |  .... S TBDN=2
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| 171 |  .... F  S TBDN=$O(^LR(LRDFN,"MI",LRIDT,12,ORGNUM,TBDN)) Q:TBDN<2  D
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| 172 |  ..... S TB=+$G(^TMP("LRPXSXRB",$J,"TB",TBDN))
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| 173 |  ..... I '$L(TB) Q
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| 174 |  ..... S NE=NE+1
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| 175 |  Q
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| 176 |  ;
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| 177 | AANUMS(ANUMS) ;
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| 178 |  N AA,ABREV K ANUMS
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| 179 |  ;DBIA #4185
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| 180 |  S AA=0
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| 181 |  F  S AA=$O(^LRO(68,AA)) Q:AA<1  D
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| 182 |  . S ABREV=$P($G(^LRO(68,AA,0)),U,11)
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| 183 |  . I $L(ABREV) S ANUMS(ABREV)=AA
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| 184 |  Q
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| 185 |  ;
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| 186 | ACC(TESTS,ACC,BDN,ANUMS,ERR) ;
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| 187 |  ; returns TESTS from micro accession, ACC, BDN required
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| 188 |  ; BDN is beginning date number
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| 189 |  ; ANUMS is array of accession name numbers (avoids lookup on repeated calls)
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| 190 |  N DIC,LRAA,LRAAB,LRAD,LRAN,TEST,X,Y K DIC,TESTS
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| 191 |  S ERR=0
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| 192 |  I '$L($G(ACC)) S ERR=1 Q
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| 193 |  S LRAAB=$P(ACC," ")
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| 194 |  I LRAAB="" Q
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| 195 |  S BDN=$E($G(BDN))
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| 196 |  I BDN'>1 S ERR=1 Q
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| 197 |  S LRAN=+$P(ACC," ",3)
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| 198 |  I 'LRAN S ERR=1 Q
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| 199 |  S LRAA=+$G(ANUMS(LRAAB))
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| 200 |  I 'LRAA D
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| 201 |  . S DIC=68,DIC(0)="M"
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| 202 |  . S X=LRAAB
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| 203 |  . D ^DIC K DIC
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| 204 |  . S LRAA=+Y
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| 205 |  . S ANUMS(LRAAB)=LRAA
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| 206 |  I LRAA'>0 S ERR=1 Q
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| 207 |  S LRAD=BDN_$P(ACC," ",2)_"0000" ; yearly acc areas are assumed
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| 208 |  S TEST=0
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| 209 |  F  S TEST=$O(^LRO(68,LRAA,1,LRAD,1,LRAN,4,TEST)) Q:TEST<1  D
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| 210 |  . S TESTS(TEST)=TEST
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| 211 |  Q
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| 212 |  ;
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