| 1 | C0CMCCD ; GPL - MXML based CCD utilities;12/04/09 17:05
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| 2 | ;;0.1;C0C;nopatch;noreleasedate
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| 3 | ;Copyright 2009 George Lilly. Licensed under the terms of the GNU
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| 4 | ;General Public License See attached copy of the License.
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| 5 | ;
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| 6 | ;This program is free software; you can redistribute it and/or modify
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| 7 | ;it under the terms of the GNU General Public License as published by
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| 8 | ;the Free Software Foundation; either version 2 of the License, or
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| 9 | ;(at your option) any later version.
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| 10 | ;
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| 11 | ;This program is distributed in the hope that it will be useful,
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| 12 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 13 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 14 | ;GNU General Public License for more details.
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| 15 | ;
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| 16 | ;You should have received a copy of the GNU General Public License along
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| 17 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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| 18 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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| 19 | ;
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| 20 | Q
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| 21 | ;
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| 22 | PARSCCD(DOC,OPTION) ; THIS WAS COPIED FROM EN^MXMLDOM TO CUSTIMIZE FOR
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| 23 | ; PROCESSING CCDS
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| 24 | N CBK,SUCCESS,LEVEL,NODE,HANDLE
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| 25 | K ^TMP("MXMLERR",$J)
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| 26 | L +^TMP("MXMLDOM",$J):5
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| 27 | E Q 0
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| 28 | S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
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| 29 | L -^TMP("MXMLDOM",$J)
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| 30 | S CBK("STARTELEMENT")="STARTELE^C0CMCCD" ; ONLY THIS ONE IS CHANGED ;GPL
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| 31 | S CBK("ENDELEMENT")="ENDELE^MXMLDOM"
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| 32 | S CBK("COMMENT")="COMMENT^MXMLDOM"
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| 33 | S CBK("CHARACTERS")="CHAR^MXMLDOM"
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| 34 | S CBK("ENDDOCUMENT")="ENDDOC^MXMLDOM"
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| 35 | S CBK("ERROR")="ERROR^MXMLDOM"
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| 36 | S (SUCCESS,LEVEL,LEVEL(0),NODE)=0,OPTION=$G(OPTION,"V1")
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| 37 | D EN^MXMLPRSE(DOC,.CBK,OPTION)
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| 38 | D:'SUCCESS DELETE^MXMLDOM(HANDLE)
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| 39 | Q $S(SUCCESS:HANDLE,1:0)
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| 40 | ; Start element
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| 41 | ; Create new child node and push info on stack
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| 42 | STARTELE(ELE,ATTR) ; COPIED FROM STARTELE^MXMLDOM AND MODIFIED TO TREAT
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| 43 | ; ATTRIBUTES AS SUBELEMENTS TO MAKE CCD XPATH PROCESSING EASIER
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| 44 | N PARENT
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| 45 | S PARENT=LEVEL(LEVEL),NODE=NODE+1
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| 46 | S:PARENT ^TMP("MXMLDOM",$J,HANDLE,PARENT,"C",NODE)=ELE
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| 47 | S LEVEL=LEVEL+1,LEVEL(LEVEL)=NODE,LEVEL(LEVEL,0)=ELE
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| 48 | S ^TMP("MXMLDOM",$J,HANDLE,NODE)=ELE,^(NODE,"P")=PARENT
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| 49 | ;M ^("A")=ATTR
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| 50 | N ZI S ZI="" ; INDEX FOR ATTR
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| 51 | F S ZI=$O(ATTR(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
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| 52 | . N ELE,TXT ; ABOUT TO RECURSE
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| 53 | . S ELE=ZI ; TAG
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| 54 | . S TXT=ATTR(ZI) ; DATA
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| 55 | . D STARTELE(ELE,"") ; CREATE A NEW SUBNODE
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| 56 | . D TXT^MXMLDOM("T") ; INSERT DATA TO TAG
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| 57 | . D ENDELE^MXMLDOM(ELE) ; POP BACK UP A LEVEL
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| 58 | Q
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| 59 | ;
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| 60 | ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
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| 61 | N ZN
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| 62 | ;I $$TAG(ZOID)["entry" B
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| 63 | S ZN=$$NXTSIB(ZOID)
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| 64 | I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
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| 65 | Q 0
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| 66 | ;
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| 67 | FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
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| 68 | Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
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| 69 | ;
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| 70 | PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
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| 71 | Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
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| 72 | ;
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| 73 | ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
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| 74 | S HANDLE=C0CDOCID
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| 75 | K @RTN
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| 76 | D GETTXT^MXMLDOM("A")
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| 77 | Q
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| 78 | ;
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| 79 | TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
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| 80 | ;I ZOID=149 B ;GPLTEST
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| 81 | N X,Y
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| 82 | S Y=""
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| 83 | S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
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| 84 | I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
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| 85 | I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
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| 86 | Q Y
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| 87 | ;
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| 88 | NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
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| 89 | Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
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| 90 | ;
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| 91 | DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
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| 92 | ;N ZT,ZN S ZT=""
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| 93 | ;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
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| 94 | ;Q $G(@C0CDOM@(ZOID,"T",1))
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| 95 | S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
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| 96 | Q
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| 97 | ;
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| 98 | CLEANARY(OUTARY,INARY) ; GOES THROUGH AN ARRAY AND CALLS CLEAN ON EACH NODE
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| 99 | ; INARY AND OUTARY PASSED BY NAME
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| 100 | N ZI S ZI=""
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| 101 | F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH NODE
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| 102 | . S @OUTARY@(ZI)=$$CLEAN(@INARY@(ZI)) ; CLEAN THE NODE
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| 103 | Q
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| 104 | ;
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| 105 | CLEAN(STR) ; extrinsic function; returns string
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| 106 | ;; Removes all non printable characters from a string.
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| 107 | ;; STR by Value
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| 108 | N TR,I
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| 109 | F I=0:1:31 S TR=$G(TR)_$C(I)
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| 110 | S TR=TR_$C(127)
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| 111 | QUIT $TR(STR,TR)
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| 112 | ;
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| 113 | STRIPTXT(OUTARY,ZARY) ; STRIPS THE "TEXT" PORTION OUT OF AN XML FILE
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| 114 | ; THIS IS USED TO DELETE THE NARATIVE HTML OUT OF THE CCD XML FILES BECAUSE
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| 115 | ; THEY DO NOT WORK RIGHT WITH THE PARSER
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| 116 | ;N ZWRK,ZBLD,ZI ; WORK ARRAY,BUILD ARRAY, AND COUNTER
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| 117 | S ZI=$O(@ZARY@("")) ; GET FIRST LINE NUMBER
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| 118 | D C0CBEGIN("ZWRK",ZI) ; INSERT FIRST LINE IN WORK ARRAY
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| 119 | F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH LINE OF THE ARRAY
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| 120 | . I $O(@ZARY@(ZI))="" D Q ; AT THE END
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| 121 | . . D C0CEND("ZWRK",ZI) ; INCLUDE LAST LINE IN WORK ARRAY
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| 122 | . I ZI=1 D C0CBEGIN("ZWRK",ZI) ; START WITH FIRST LINE
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| 123 | . I @ZARY@(ZI)["<text" D C0CEND("ZWRK",ZI-1) ;PREV LINE IS AN END
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| 124 | . I @ZARY@(ZI)["</text>" D C0CBEGIN("ZWRK",ZI+1) ;NEXT LINE IS A BEGIN
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| 125 | S ZI=""
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| 126 | F S ZI=$O(ZWRK(ZI)) Q:ZI="" D ; MAKE A BUILD LIST FROM THE WORK ARRAY
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| 127 | . D QUEUE^C0CXPATH("ZBLD",ZARY,$P(ZWRK(ZI),"^",1),$P(ZWRK(ZI),"^",2))
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| 128 | D BUILD^C0CXPATH("ZBLD",OUTARY) ; BUILD NEW ARRAY WITHOUT TEXT SECTIONS
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| 129 | K @OUTARY@(0) ; GET RID OF THE LINE COUNT
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| 130 | Q
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| 131 | ;
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| 132 | C0CBEGIN(ZA,LN) ; INSERTS A BEGIN LINE LN INTO ARRAY ZWRK, PASSED BY NAME
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| 133 | N ZI
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| 134 | S ZI=$O(@ZA@(""),-1)
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| 135 | I ZI="" S ZI=1
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| 136 | E S ZI=ZI+1 ; INCREMENT COUNT IN WORK ARRAY
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| 137 | S $P(@ZA@(ZI),"^",1)=LN
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| 138 | Q
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| 139 | ;
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| 140 | C0CEND(ZB,LN) ; INSERTS AN END LINE LN INTO ARRAY ZWRK, PASSED BY NAME
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| 141 | N ZI
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| 142 | S ZI=$O(@ZB@(""),-1)
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| 143 | I ZI="" S ZI=1
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| 144 | S $P(@ZB@(ZI),"^",2)=LN
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| 145 | Q
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| 146 | ;
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| 147 | SEPARATE(OUTARY,INARY) ; SEPARATES XPATH VARIABLES ACCORDING TO THEIR
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| 148 | ; ROOT ; /Problems/etc/etc goes to @OUTARY@("Problems","/Problems/etc/etc")
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| 149 | S ZI=""
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| 150 | F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH ELEMENT OF THE ARRAY
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| 151 | . I $P(ZI,"//",2)'="" D ; FOR NON-BODY ENTRIES
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| 152 | . . S ZJ=$P(ZI,"/",4) ; things like From Patient Actor
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| 153 | . E D ; FOR BODY PARTS
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| 154 | . . S ZJ=$P(ZI,"/",2) ;
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| 155 | . . I ZJ="" S ZJ=$P(ZI,"/",3) ;
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| 156 | . S @OUTARY@(ZJ,ZI)=$G(@INARY@(ZI)) ;FIX THIS FOR MULTILINE COMMENTS
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| 157 | Q
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| 158 | ;
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| 159 | FINDTID ; FIND TEMPLATE IDS IN DOM 1
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| 160 | S C0CDOCID=1
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| 161 | S ZD=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
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| 162 | S ZN=""
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| 163 | S CURSEC=""
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| 164 | S TID=""
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| 165 | F S ZN=$O(@ZD@(ZN)) Q:ZN="" D ;
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| 166 | . I $$TAG(ZN)="root" D ;
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| 167 | . . I $$TAG($$PARENT(ZN))="templateId" D ; ONLY LOOKING FOR TEMPLATES
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| 168 | . . . S ZG=$$PARENT($$PARENT(ZN))
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| 169 | . . . S ZG2=$$PARENT(ZG) ;COMPONENT THAT HOLDS THIS SECTION
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| 170 | . . . S CMT=$G(@ZD@(ZG,"X",1))
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| 171 | . . . I CMT="" S CMT="?"
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| 172 | . . . I $$TAG(ZG)="section" D ;START OF A SECTION
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| 173 | . . . . S CURSEC=$$PARENT(ZG)
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| 174 | . . . . S SECCMT=$G(@ZD@(CURSEC,"X",1))
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| 175 | . . . . I SECCMT="" S SECCMT="?"
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| 176 | . . . . S SECTID=$G(@ZD@(ZN,"T",1)) ;SECTION TEMPLATE ID
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| 177 | . . . S TID=$G(@ZD@(ZN,"T",1)) ;TEMPLATE ID
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| 178 | . . . I CURSEC'="" D ; IF WE ARE IN A SECTION
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| 179 | . . . . S CCDDIR(ZG2,CURSEC,$$TAG(ZG2),CMT,SECCMT)=TID
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| 180 | . . . . S DOMMAP(ZG2)=CURSEC_U_$$TAG(ZG2)_U_TID_U_SECTID
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| 181 | . . . W !,$$TAG(ZG2)," ",$G(@ZD@(ZG,"X",1))
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| 182 | . . . W " root ",ZN," ",@ZD@(ZN,"T",1)
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| 183 | Q
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| 184 | ;
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| 185 | FINDALT ; PROCESS THE DOMMAP AND FIND THE ALT TAGS FOR COMPONENTS
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| 186 | ;
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| 187 | S ZI=""
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| 188 | F S ZI=$O(DOMMAP(ZI)) Q:ZI="" D ; FOR EACH NODE IN THE MAP
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| 189 | . S ZJ=DOMMAP(ZI) ;
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| 190 | . S PARNODE=$P(ZJ,U,1) ;PARENT NODE
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| 191 | . S TAG=$P(ZJ,U,2) ;THIS TAG
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| 192 | . S TID=$P(ZJ,U,3) ;THIS TEMPLATE ID
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| 193 | . S PARTID=$P(ZJ,U,4) ;PARENT TEMPLATE ID
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| 194 | . S ZIEN=$O(^C0CXDS(178.101,"TID",TID,"")) ;THIS NODE IEN
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| 195 | . S PARIEN=$O(^C0CXDS(178.101,"TID",PARTID,"")) ;PARENT NODE IEN
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| 196 | . I ZI=PARNODE D ; IF THIS IS A SECTION NODE
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| 197 | . . S ALTTAG=$$GET1^DIQ(178.101,PARIEN_",",.03) ;ALT TAG FIELD FOR PARENT
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| 198 | . . S NAME=$$GET1^DIQ(178.101,ZIEN_",",.01) ;NAME OF THIS NODE'S TEMPLATE
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| 199 | . . W ZI," ",TAG," ",ALTTAG," ",NAME,!
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| 200 | . . S C0CTAGS(ZI)=ALTTAG
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| 201 | . E D ; NOT A SECTION NODE
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| 202 | . . N ZJ S ZJ=""
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| 203 | . . S ZJ=$O(^C0CXDS(178.101,"D",PARIEN,ZIEN,"")) ;A WHEREUSED POINTER?
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| 204 | . . I ZJ'="" D ; THERE IS A NEW LABEL FOR THIS NODE
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| 205 | . . . N ZK
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| 206 | . . . S ZK=$$GET1^DIQ(178.111,ZJ_","_ZIEN_",",2)
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| 207 | . . . I ZK'="" D ;
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| 208 | . . . . W "FOUND ",ZK,!
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| 209 | . . . . S C0CTAGS(ZI)=ZK ; NEW TAG FOR INTERSECTION
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| 210 | Q
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| 211 | ;
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| 212 | ALTTAG(NODE) ; SET Y EQUAL TO THE ALT TAG FOUND IN C0CTAGS IF NODE IF FOUND
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| 213 | ;
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| 214 | S Y=$G(C0CTAGS(NODE))
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| 215 | Q
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| 216 | ;
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| 217 | SETCBK ; SET THE TAG CALLBACK FOR XPATH PROCESSSING OF THE CCD
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| 218 | S C0CCBK("TAG")="D ALTTAG^C0CMCCD(ZOID)"
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| 219 | Q
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| 220 | ;
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| 221 | OUTCCD(GARYIN) ; OUTPUT THE PARSED CCD TO A TEXT FILE
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| 222 | ;D TEST3^C0CMXML
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| 223 | N ZT S ZT=$NA(^TMP("CCDOUT",$J))
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| 224 | N ZI,ZJ
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| 225 | S ZI=1 S ZJ=""
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| 226 | K @ZT
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| 227 | F S ZJ=$O(GARYIN(ZJ)) Q:ZJ="" D ;
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| 228 | . S @ZT@(ZI)=ZJ_"^"_GARYIN(ZJ)
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| 229 | . S ZI=ZI+1
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| 230 | S ONAME=$NA(@ZT@(1))
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| 231 | W $$OUTPUT^C0CXPATH(ONAME,"CCDOUT.txt","/home/vademo2/CCR")
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| 232 | K @ZT
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| 233 | Q
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| 234 | ;
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| 235 | GENXDS(ZD) ; GENERATE THE XDS PROTOTYPE RECORDS FROM A CCDDIR ARRAY
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| 236 | ; ARRAY ELEMENTS LOOK LIKE:
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| 237 | ; CCDDIR(1659,1634,"observation"," Result observaion template "," Vital signs section template ")="2.16.840.1.113883.10.20.1.31"
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| 238 | ;or CCDDIR(cur node,section node,cur tag,cur name,sec name)=templateId
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| 239 | S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
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| 240 | S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
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| 241 | S DONE=0
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| 242 | F Q:DONE D ;
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| 243 | . W @ZI,!
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| 244 | . S ZJ=$QS(ZI,5)
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| 245 | . S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
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| 246 | . S C0CFDA(ZF,"?+1,",.01)=ZJ
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| 247 | . S C0CFDA(ZF,"?+1,",.02)=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
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| 248 | . S C0CFDA(ZF,"?+1,",1)=@ZI
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| 249 | . D UPDIE
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| 250 | . S ZI=$Q(@ZI)
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| 251 | . I ZI="" S DONE=1
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| 252 | Q
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| 253 | ;
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| 254 | WHRUSD(ZD) ; UPDATE THE C0C XDS FILE WITH WHERE USED DATA FROM
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| 255 | ; CCDDIR PASS BY NAME
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| 256 | ; ARRAY ELEMENTS LOOK LIKE:
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| 257 | ; CCDDIR(1634," Vital signs section template ",1659,"observation"," Result observaion template ")="2.16.840.1.113883.10.20.1.31"
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| 258 | ;or CCDDIR(section node,sec name, cur node,cur tag,cur name)=templateId
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| 259 | S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
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| 260 | S ZSF=178.111 ; WHERE USED SUBFILE OF C0C XDS PROTOTYPE FILE
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| 261 | S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
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| 262 | S DONE=0
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| 263 | F Q:DONE D ;
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| 264 | . W @ZI
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| 265 | . S ZIEN=$O(^C0CXDS(178.101,"TID",@ZI,"")) ; IEN FOR THIS NODE'S TEMPLATE
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| 266 | . W " IEN:",ZIEN
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| 267 | . S ZJ=$QS(ZI,2)
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| 268 | . S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
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| 269 | . S ZPIEN=$O(^C0CXDS(178.101,"B",ZJ,"")) ; PARENT IEN
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| 270 | . W " PARENT IEN:",ZPIEN
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| 271 | . S ZTAG=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
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| 272 | . W " TAG:",ZTAG,!
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| 273 | . I ZIEN'=ZPIEN D ; ONLY FOR CHILD TEMPLATES
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| 274 | . . S C0CFDA(ZSF,"?+1,"_ZIEN_",",.01)=ZPIEN ; NEW SUBFILE ENTRY WITH PAR PTR
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| 275 | . . S C0CFDA(ZSF,"?+1,"_ZIEN_",",1)=ZTAG ; TAG FOR NEW ENTRY
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| 276 | . . D UPDIE
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| 277 | . ;S C0CFDA(ZF,"?+1,",1)=@ZI
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| 278 | . ;D UPDIE
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| 279 | . S ZI=$Q(@ZI)
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| 280 | . I ZI="" S DONE=1
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| 281 | Q
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| 282 | ;
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| 283 | UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
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| 284 | K ZERR
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| 285 | D CLEAN^DILF
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| 286 | D UPDATE^DIE("","C0CFDA","","ZERR")
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| 287 | I $D(ZERR) D ;
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| 288 | . W "ERROR",!
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| 289 | . ZWR ZERR
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| 290 | . B
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| 291 | K C0CFDA
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| 292 | Q
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| 293 | ;
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