source: ccr/branches/ohum/p/C0CNHIN.m@ 1476

Last change on this file since 1476 was 1433, checked in by Sam Habiel, 12 years ago

Update based on OHUM's latest routines

File size: 10.2 KB
Line 
1C0CNHIN ; GPL - PROCESSING FOR OUTPUT OF NHINV ROUTINES;6/3/11 17:05
2 ;;1.2;C0C;;May 11, 2012;Build 47
3 ;Copyright 2011 George Lilly. Licensed under the terms of the GNU
4 ;General Public License See attached copy of the License.
5 ;
6 ;This program is free software; you can redistribute it and/or modify
7 ;it under the terms of the GNU General Public License as published by
8 ;the Free Software Foundation; either version 2 of the License, or
9 ;(at your option) any later version.
10 ;
11 ;This program is distributed in the hope that it will be useful,
12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 ;GNU General Public License for more details.
15 ;
16 ;You should have received a copy of the GNU General Public License along
17 ;with this program; if not, write to the Free Software Foundation, Inc.,
18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
19 ;
20 Q
21EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
22 ;
23 K GARY,GNARY,GIDX,C0CDOCID
24 N GN
25 K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
26 K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
27 K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
28 D GET^NHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
29 S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
30 S C0CDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
31 D DOMO^C0CDOM(C0CDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
32 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
33 ;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
34 Q
35 ;
36PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
37 ;
38 N ZG
39 S ZG=$NA(^TMP("PQRIXML",$J))
40 K @ZG
41 D GETXML^C0CMXP(ZG,"PQRIXML") ; GET THE XML FROM C0C MISC XML
42 N C0CDOCID
43 S C0CDOCID=$$PARSE^C0CDOM(ZG,"PQRIXML") ; PARSE THE XML
44 D DOMO^C0CDOM(C0CDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
45 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
46 Q
47 ;
48PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
49 ;
50 ;N GG
51 D GETXML^C0CMXP("GG","PQRI ONE MEASURE")
52 D PROCESS(ZRTN,"GG","root",1)
53 Q
54 ;
55PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
56 ; ZRTN IS PASSED BY REFERENCE
57 ; ZXML IS PASSED BY NAME
58 ; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
59 ;
60 N GN
61 S GN=$NA(^TMP("C0CPROCESS",$J))
62 K @GN
63 M @GN=@ZXML
64 S C0CDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
65 K @GN
66 D DOMO^C0CDOM(C0CDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
67 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
68 Q
69 ;
70LOADSMRT ;
71 ;
72 K ^GPL("SMART")
73 S GN=$NA(^GPL("SMART",1))
74 I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
75 Q
76 ;
77SMART ; TRY IT WITH SMART
78 ;
79 S GN=$NA(^GPL("SMART"))
80 ;K ^TMP("MXMLDOM",$J)
81 K ^TMP("MXMLERR",$J)
82 S C0CDOCID=$$PARSE(GN,"SMART")
83 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
84 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
85 Q
86 ;
87CCR ; TRY IT WITH A CCR
88 ;
89 S GN=$NA(^GPL("CCR"))
90 ;K ^TMP("MXMLDOM",$J)
91 K ^TMP("MXMLERR",$J)
92 S C0CDOCID=$$PARSE(GN,"CCR")
93 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
94 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
95 Q
96 ;
97MED ; TRY IT WITH A CCR MED SECTION
98 ;
99 S GN=$NA(^GPL("MED"))
100 K ^TMP("MXMLDOM",$J)
101 K ^TMP("MXMLERR",$J)
102 S C0CDOCID=$$PARSE(GN,"MED")
103 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
104 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
105 Q
106 ;
107CCD ; TRY IT WITH A CCD
108 ;
109 S GN=$NA(^GPL("CCD"))
110 ;K ^TMP("MXMLDOM",$J)
111 K ^TMP("MXMLERR",$J)
112 S C0CDOCID=$$PARSE(GN,"CCD")
113 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
114 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
115 Q
116 ;
117TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
118 ; PARSED WITH MXML
119 ; RUN THROUGH XPATH
120 K GARY,GIDX,C0CDOCID
121 S GN=$NA(^GPL("NHIN"))
122 ;S GN=$NA(^GPL("DOMI"))
123 S C0CDOCID=$$PARSE(GN,"GPLTEST")
124 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"/results/")
125 K ^GPL("GNARY")
126 M ^GPL("GNARY")=GNARY
127 Q
128 ;
129TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
130 ;
131 S GN=$NA(^GPL("GNARY"))
132 S C0CDOCID=$$DOMI^C0CDOM(GN,,"results")
133 D OUTXML^C0CDOM("G",C0CDOCID)
134 K ^GPL("DOMI")
135 M ^GPL("DOMI")=G
136 Q
137 ;
138TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
139 ; PARSED WITH MXML
140 ; RUN THROUGH XPATH
141 K GARY,GIDX,C0CDOCID
142 ;S GN=$NA(^GPL("NHIN"))
143 S GN=$NA(^GPL("DOMI"))
144 S C0CDOCID=$$PARSE(GN,"GPLTEST")
145 D DOMO^C0CDOM(C0CDOCID,"/","GNARY","GIDX","GARY",,"/results/")
146 Q
147 ;
148DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
149 ; THE XPATH INDEX ZXIDX, PASSED BY NAME
150 ; THE XPATH ARRAY XPARY, PASSED BY NAME
151 ; ZOID IS THE STARTING OID
152 ; ZPATH IS THE STARTING XPATH, USUALLY "/"
153 ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
154 ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
155 I $G(ZREDUX)="" S ZREDUX=""
156 N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
157 N NEWNUM S NEWNUM=""
158 I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
159 S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
160 I $G(ZREDUX)'="" D ; REDUX PROVIDED?
161 . N GT S GT=$P(NEWPATH,ZREDUX,2)
162 . I GT'="" S NEWPATH=GT
163 S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
164 N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
165 I $D(GA) D ; PROCESS THE ATTRIBUTES
166 . N ZI S ZI=""
167 . F S ZI=$O(GA(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
168 . . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
169 . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
170 . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
171 N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
172 I $D(GD(2)) D ;
173 . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
174 E I $D(GD(1)) D ;
175 . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
176 . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
177 N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
178 I ZFRST'=0 D ; THERE IS A CHILD
179 . N ZNUM
180 . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
181 . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
182 N GNXT S GNXT=$$NXTSIB(ZOID)
183 I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
184 I GNXT'=0 D ;
185 . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
186 . I (ZNUM="")&(ZMULT) D ; SIBLING IS FIRST OF MULTIPLES
187 . . N ZNUM S ZNUM=1 ;
188 . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
189 . E D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
190 Q
191 ;
192ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
193 ;
194 N ZZI,ZZJ,ZZN
195 S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
196 I ZZI="" Q ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
197 S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
198 S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
199 I ZZI'["]" D ; A SINGLETON
200 . S ZZN=1
201 E D ; THERE IS AN [x] OCCURANCE
202 . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
203 . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
204 I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
205 Q
206 ;
207PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
208 ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
209 ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
210 ;Q $$EN^MXMLDOM(INXML)
211 Q $$EN^MXMLDOM(INXML,"W")
212 ;
213ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
214 N ZN
215 ;I $$TAG(ZOID)["entry" B
216 S ZN=$$NXTSIB(ZOID)
217 I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
218 Q 0
219 ;
220FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
221 Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
222 ;
223PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
224 Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
225 ;
226ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
227 S HANDLE=C0CDOCID
228 K @RTN
229 D GETTXT^MXMLDOM("A")
230 Q
231 ;
232TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
233 ;I ZOID=149 B ;GPLTEST
234 N X,Y
235 S Y=""
236 S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
237 I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
238 I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
239 Q Y
240 ;
241NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
242 Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
243 ;
244DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
245 ;N ZT,ZN S ZT=""
246 ;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
247 ;Q $G(@C0CDOM@(ZOID,"T",1))
248 S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
249 Q
250 ;
251OUTXML(ZRTN,INID) ; USES C0CMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
252 ;
253 S C0CDOCID=INID
254 D START^C0CMXMLB($$TAG(1),,"G")
255 D NDOUT($$FIRST(1))
256 D END^C0CMXMLB ;END THE DOCUMENT
257 M @ZRTN=^TMP("MXMLBLD",$J)
258 K ^TMP("MXMLBLD",$J)
259 Q
260 ;
261NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
262 N ZI S ZI=$$FIRST(ZOID)
263 I ZI'=0 D ; THERE IS A CHILD
264 . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
265 . D MULTI^C0CMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0CMXML(ZI)") ;HAVE CHILDREN
266 E D ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
267 . ;W "DOING",ZOID,!
268 . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
269 . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
270 . D ITEM^C0CMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
271 I $$NXTSIB(ZOID)'=0 D ; THERE IS A SIBLING
272 . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
273 Q
274 ;
275WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
276 ;
277 N GN,GN2
278 D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
279 S GN2=$NA(@GN@(1))
280 W $$OUTPUT^C0CXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
281 Q
282 ;
283TESTNARY ; TEST MAKING A NHIN ARRAY
284 N ZI S ZI=""
285 N ZH ; DOM HANDLE
286 D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
287 S ZH=C0CDOCID ; SET THE HANDLE
288 N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
289 F S ZI=$O(@ZD@(ZI)) Q:ZI="" D ; FOR EACH NODE
290 . N ZATT
291 . D MNARY(.ZATT,ZH,ZI)
292 . N ZPRE,ZN
293 . S ZPRE=$$PRE(ZI)
294 . S ZN=$P(ZPRE,",",2)
295 . S ZPRE=$P(ZPRE,",",1)
296 . ;I $D(ZATT) ZWR ZATT
297 . N ZJ S ZJ=""
298 . F S ZJ=$O(ZATT(ZJ)) Q:ZJ="" D ; FOR EACH ATTRIBUTE
299 . . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
300 . . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
301 Q
302 ;
303PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
304 ;
305 N GI,GI2,GPT,GJ,GN
306 S GI=$$PARENT(ZNODE) ; PARENT NODE
307 I GI=0 Q "" ; NO PARENT
308 S GPT=$$TAG(GI) ; TAG OF PARENT
309 S GI2=$$PARENT(GI) ; PARENT OF PARENT
310 I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
311 S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
312 I GJ=ZNODE Q:$$TAG(GI)_",1"
313 F GN=2:1 Q:GJ=ZNODE D ;
314 . S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
315 Q GPT_","_GN
316 ;
317MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
318 ; RETURNED IN ZRTN, PASSED BY REFERENCE
319 ; ZHANDLE IS THE DOM DOCUMENT ID
320 ; ZOID IS THE DOM NODE
321 D ATT("ZRTN",ZOID)
322 Q
323 ;
Note: See TracBrowser for help on using the repository browser.