1 | C0CRIMA ; CCDCCR/GPL - RIM REPORT ROUTINES; 6/6/08
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2 | ;;1.0;C0C;;May 19, 2009;Build 38
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3 | ;Copyright 2008,2009 George Lilly, University of Minnesota.
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4 | ;Licensed under the terms of the GNU General Public License.
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5 | ;See attached copy of the License.
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6 | ;
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7 | ;This program is free software; you can redistribute it and/or modify
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8 | ;it under the terms of the GNU General Public License as published by
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9 | ;the Free Software Foundation; either version 2 of the License, or
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10 | ;(at your option) any later version.
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11 | ;
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12 | ;This program is distributed in the hope that it will be useful,
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13 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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14 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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15 | ;GNU General Public License for more details.
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16 | ;
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17 | ;You should have received a copy of the GNU General Public License along
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18 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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19 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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20 | ;
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21 | ; THESE ROUTINES EXAMINE ONE OR MORE, UP TO ALL, OF THE PATIENTS ON THE
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22 | ; SYSTEM TO DETERMINE HOW COMPLETE THE RESULTING CCR OR CCD WOULD BE FOR
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23 | ; THESE PATIENTS. IT BEGINS TO MEASURE "HL7 RIM COHERENCE" WHICH IS HOW USEFUL
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24 | ; THE VARIABLES WILL BE TO A RIM-MODELED APPLICATION AFTER THEY ARE
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25 | ; CONVEYED VIA THE CCR OR CCD.
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26 | ; FACTORS THAT AFFECT RIM COHERENCE INCLUDE:
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27 | ; 1. THE PRESENSE OF CLINICAL DATA IN A SECTION
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28 | ; 2. ARE THE DATA ELEMENTS TIME-BOUND
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29 | ; 3. ARE THE DATA ELEMENTS CODED WITH SNOMED OR LOINC ETC
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30 | ; 4. ARE SOURCE ACTORS ASSOCIATED WITH THE DATA ELEMENTS
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31 | ; 5. ARE ACTORS IDENTIFIED REGARDING THEIR ROLE
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32 | ; .. AND OTHER FACTORS YET TO BE DETERMINED
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33 | ;
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34 | ; SINCE THESE MEASUREMENTS ARE DONE AT THE VARIABLE LEVEL, THEY
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35 | ; REFLECT ON RIM COHERENCE WHETHER THE CCR OR THE CCD IS USED FOR
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36 | ; CONVEYANCE TO THE RIM APPLICATION.
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37 | ;
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38 | ;
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39 | ANALYZE(BEGDFN,DFNCNT,APARMS) ; RIM COHERANCE ANALYSIS ROUTINE
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40 | ; BEGINS AT BEGDFN AND GOES FOR DFNCNT PATIENTS
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41 | ; TO RESUME AT NEXT PATIENT, USE BEGDFN=""
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42 | ; USE RESET^C0CRIMA TO RESET TO TOP OF PATIENT LIST
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43 | ; APARMS ARE PARAMETERS TO BE USED IN THE EXTRACTION
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44 | ; SEE C0CPARMS FOR SUPPORTED PARAMTERS
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45 | ;
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46 | N RIMARY,RIMTMP,RIMI,RIMDFN,RATTR
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47 | N CCRGLO
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48 | S C0CCHK=0 ; CHECKSUM FLAG
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49 | D ASETUP ; SET UP VARIABLES AND GLOBALS
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50 | D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE
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51 | I '$D(@RIMBASE@("RESUME")) S @RIMBASE@("RESUME")=$O(^DPT(0)) ; FIRST TIME
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52 | S RESUME=@RIMBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN
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53 | S RIMDFN=BEGDFN ; BEGIN WITH THE BEGDFN PATIENT
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54 | I RIMDFN="" S RIMDFN=RESUME
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55 | I +RIMDFN=0 D Q ; AT THE END OF THE PATIENTS
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56 | . W "END OF PATIENT LIST, CALL RESET^C0CRIMA",!
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57 | I '$D(APARMS) S APARMS="" ; DEFAULT NO OVERRIDE PARMS
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58 | F RIMI=1:1:DFNCNT D Q:+RIMDFN=0 ; FOR DFNCNT NUMBER OF PATIENTS OR END
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59 | . K @RIMBASE@("VARS",RIMDFN) ; CLEAR OUT OLD VARS
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60 | . D CCRRPC^C0CCCR(.CCRGLO,RIMDFN,APARMS,"CCR") ;PROCESS THE CCR
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61 | . W RIMDFN,!
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62 | . ;
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63 | . ; COPY ALL THE VARIABLES TO THE RIM MAP AREA INDEXED BY PATIENT
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64 | . ;
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65 | . I $D(^TMP("C0CCCR",$J,"PROBVALS",1)) D ; PROBLEM VARS EXISTS
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66 | . . M @RIMBASE@("VARS",RIMDFN,"PROBLEMS")=^TMP("C0CCCR",$J,"PROBVALS")
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67 | . . S @RIMBASE@("VARS",RIMDFN,"PROBLEMS",0)=$O(^TMP("C0CCCR",$J,"PROBVALS",""),-1)
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68 | . I $D(^TMP("C0CCCR",$J,"VITALS",1)) D ; VITALS VARS EXISTS
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69 | . . M @RIMBASE@("VARS",RIMDFN,"VITALS")=^TMP("C0CCCR",$J,"VITALS")
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70 | . I $D(^TMP("C0CCCR",$J,"MEDMAP",1)) D ; MEDS VARS EXISTS
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71 | . . M @RIMBASE@("VARS",RIMDFN,"MEDS")=^TMP("C0CCCR",$J,"MEDMAP")
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72 | . I $D(^TMP("C0CCCR",$J,"ALERTS",1,"ALERTOBJECTID")) D ; ALERTS EXIST
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73 | . . W "FOUND ALERT VARS",!
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74 | . . M @RIMBASE@("VARS",RIMDFN,"ALERTS")=^TMP("C0CCCR",$J,"ALERTS")
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75 | . I $D(^TMP("C0CCCR",$J,"RESULTS",0)) D ; RESULTS EXIST
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76 | . . W "FOUND RESULTS VARS",!
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77 | . . M @RIMBASE@("VARS",RIMDFN,"RESULTS")=^TMP("C0CCCR",$J,"RESULTS")
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78 | . S C0CCHK=0
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79 | . I $$CHKSUM(RIMDFN) D ; CHECKSUM HAS CHANGED
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80 | . . W "CHECKSUM IS NEW OR HAS CHANGED",!
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81 | . . ;ZWR ^TMP("C0CRIM","CHKSUM",RIMDFN,*)
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82 | . . S C0CCHK=1
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83 | . K ^TMP("C0CCCR",$J) ; KILL WORK AREA FOR CCR BUILDING
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84 | . ;
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85 | . ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP
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86 | . ;
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87 | . S RATTR=$$SETATTR(RIMDFN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS
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88 | . S @RIMBASE@("ATTR",RIMDFN)=RATTR ; SAVE THE ATRIBUTES FOR THIS PAT
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89 | . ;
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90 | . ; INCREMENT THE COUNT OF PATIENTS WITH THESE ATTRIBUTES IN ATTRTBL
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91 | . ;
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92 | . ; I '$D(@RIMBASE@("ATTRTBL",RATTR)) D ; IF FIRST PAT WITH THESE ATTRS
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93 | . ; . S @RIMBASE@("ATTRTBL",RATTR)=0 ; DEFAULT VALUE TO BE INCREMENTED
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94 | . ; S @RIMBASE@("ATTRTBL",RATTR)=@RIMBASE@("ATTRTBL",RATTR)+1 ; INCREMENT
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95 | . ;
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96 | . N CATNAME,CATTBL
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97 | . ; S CATBASE=$NA(@RIMBASE@("ANALYSIS"))
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98 | . S CATNAME=""
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99 | . D CPUSH(.CATNAME,RIMBASE,"RIMTBL",RIMDFN,RATTR) ; ADD TO CATEGORY
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100 | . W "CATEGORY NAME: ",CATNAME,!
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101 | . ;
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102 | . F S RIMDFN=$O(^DPT(RIMDFN)) Q:'$$PTST^C0CSYS(RIMDFN) ; NEXT PATIENT
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103 | . ; PTST TESTS TO SEE IF PATIENT WAS MERGED
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104 | . ; IF CCRTEST=0, PTST WILL CHECK TO SEE IF THIS IS A TEST PATIENT
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105 | . ; AND WE SKIP IT
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106 | . S @RIMBASE@("RESUME")=RIMDFN ; WHERE WE ARE LEAVING OFF THIS RUN
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107 | ; D PARY^C0CXPATH(@RIMBASE@("ATTRTBL"))
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108 | Q
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109 | ;
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110 | SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS
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111 | N SBASE,SATTR
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112 | S SBASE=$NA(@RIMBASE@("VARS",SDFN))
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113 | D APOST("SATTR","RIMTBL","HEADER")
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114 | I $D(@SBASE@("PROBLEMS",1)) D ;
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115 | . D APOST("SATTR","RIMTBL","PROBLEMS")
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116 | . ; W "POSTING PROBLEMS",!
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117 | I $D(@SBASE@("VITALS",1)) D APOST("SATTR","RIMTBL","VITALS")
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118 | I $D(@SBASE@("IMMUNE",1)) D ;IMMUNIZATIONS PRESENT
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119 | . D APOST("SATTR","RIMTBL","IMMUNE")
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120 | . N ZR,ZI
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121 | . D GETPA(.ZR,SDFN,"IMMUNE","IMMUNEPRODUCTCODE")
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122 | . I ZR(0)>0 D APOST("SATTR","RIMTBL","IMMUNECODE") ;IMMUNIZATION CODES
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123 | I $D(@SBASE@("MEDS",1)) D ; IF THE PATIENT HAS MEDS VARIABLES
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124 | . D APOST("SATTR","RIMTBL","MEDS")
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125 | . N ZR,ZI
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126 | . D GETPA(.ZR,SDFN,"MEDS","MEDPRODUCTNAMECODEVALUE") ;CHECK FOR MED CODES
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127 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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128 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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129 | . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","RIMTBL","MEDSCODE") ;CODES
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130 | . ; D PATD^C0CRIMA(2,"MEDS","MEDPRODUCTNAMECODEVALUE") CHECK FOR MED CODES
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131 | I $D(@SBASE@("ALERTS",1)) D ; IF THE PATIENT HAS ALERTS
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132 | . D APOST("SATTR","RIMTBL","ALERTS")
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133 | . N ZR,ZI
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134 | . D GETPA(.ZR,SDFN,"ALERTS","ALERTAGENTPRODUCTCODEVALUE") ;REACTANT CODES
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135 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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136 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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137 | . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","RIMTBL","ALERTSCODE") ;CODES
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138 | I $D(@SBASE@("RESULTS",1)) D ; IF THE PATIENT HAS LABS VARIABLES
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139 | . D APOST("SATTR","RIMTBL","RESULTS")
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140 | . N ZR,ZI
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141 | . S ZR(0)=0 ; INITIALIZE TO NONE
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142 | . D RPCGV(.ZR,SDFN,"RESULTS") ;CHECK FOR LABS CODES
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143 | . ; D PARY^C0CXPATH("ZR") ;
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144 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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145 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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146 | . . . I $P(ZR(ZI),"^",2)="RESULTTESTCODINGSYSTEM" D ; LOINC CODE CHECK
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147 | . . . . I $P(ZR(ZI),"^",3)="LOINC" D APOST("SATTR","RIMTBL","RESULTSLN") ;
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148 | ; D APOST("SATTR","RIMTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED
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149 | I $D(@SBASE@("PROCEDURES",1)) D ;
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150 | . D APOST("SATTR","RIMTBL","PROCEDURES")
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151 | W "ATTRIBUTES: ",SATTR,!
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152 | Q SATTR
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153 | ;
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154 | RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL RIM TMP VALUES
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155 | K ^TMP("C0CRIM","RESUME")
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156 | K ^TMP("C0CRIM")
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157 | Q
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158 | ;
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159 | CLIST ; LIST THE CATEGORIES
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160 | ;
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161 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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162 | N CLBASE,CLNUM,ZI,CLIDX
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163 | S CLBASE=$NA(@RIMBASE@("RIMTBL","CATS"))
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164 | S CLNUM=@CLBASE@(0)
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165 | F ZI=1:1:CLNUM D ; LOOP THROUGH THE CATEGORIES
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166 | . S CLIDX=@CLBASE@(ZI)
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167 | . W "(",$P(@CLBASE@(CLIDX),"^",1)
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168 | . W ":",$P(@CLBASE@(CLIDX),"^",2),") "
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169 | . W CLIDX,!
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170 | ; D PARY^C0CXPATH(CLBASE)
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171 | Q
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172 | ;
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173 | CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES
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174 | ; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT
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175 | ; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE
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176 | ; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME
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177 | ; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES,
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178 | ; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X"
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179 | ; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES
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180 | ; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY
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181 | ; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING
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182 | ; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY
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183 | ; NUMBER IE CTBL_X(CDFN)=""
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184 | ;
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185 | ; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST
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186 | S CCTBL=$NA(@CBASE@(CTBL,"CATS"))
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187 | W "CBASE: ",CCTBL,!
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188 | ;
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189 | I '$D(@CCTBL@(CATTR)) D ; FIRST PATIENT IN THIS CATEGORY
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190 | . D PUSH^C0CXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY
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191 | . S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY
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192 | . S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT
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193 | . S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY
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194 | . ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME
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195 | . ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0
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196 | ;
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197 | S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY
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198 | S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT
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199 | S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK
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200 | ;
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201 | S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED
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202 | ;
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203 | S CPATLIST=$NA(@CBASE@(CTBL,"PATS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT
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204 | W "PATS BASE: ",CPATLIST,!
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205 | S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST
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206 | ;
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207 | Q
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208 | ;
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209 | CHKSUM(CKDFN) ; DOES A CHECKSUM AND STORES IT IN MUMPS GLOBALS
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210 | ;
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211 | S C0CCKB=$NA(^TMP("C0CRIM","CHKSUM")) ;CHECKSUM BASE
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212 | S C0CGLB=$NA(^TMP("C0CRIM","VARS")) ;CCR VARIABLE BASE
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213 | S C0CI=""
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214 | F S C0CI=$O(@C0CGLB@(CKDFN,C0CI)) Q:C0CI="" D ;FOR EACH DOMAIN
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215 | . ;W "DFN:",CKDFN," DOMAIN:",C0CI,!
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216 | . S C0CJ=$NA(@C0CGLB@(CKDFN,C0CI))
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217 | . I C0CI="HEADER" D ; HAVE TO TAKE OUT THE "DATE GENERATED"
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218 | . . S C0CDT=@C0CGLB@(CKDFN,C0CI,1,"DATETIME")
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219 | . . K @C0CGLB@(CKDFN,C0CI,1,"DATETIME")
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220 | . S C0CCK(C0CI)=$$CHKSUM^XUSESIG1(C0CJ)
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221 | . I C0CI="HEADER" D ; PUT IT BACK
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222 | . . S @C0CGLB@(CKDFN,C0CI,1,"DATETIME")=C0CDT
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223 | S C0CK="C0CCK" ;
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224 | S C0CALL=$$CHKSUM^XUSESIG1(C0CK) ;CHECKSUM OF ALL DOMAIN CHECKSUMS
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225 | S CHKR=0 ; RESULT DEFAULT
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226 | I $D(^TMP("C0CRIM","CHKSUM",CKDFN,"ALL")) D ; OLD CHECKSUM EXISTS
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227 | . I @C0CCKB@(CKDFN,"ALL")'=C0CALL S CHKR=1
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228 | E S CHKR=1 ;CHECKSUM IS NEW
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229 | S @C0CCKB@(CKDFN,"ALL")=C0CALL
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230 | M @C0CCKB@(CKDFN,"DOMAIN")=C0CCK
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231 | ;ZWR ^TMP("C0CRIM","CHKSUM",CKDFN,*)
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232 | Q CHKR
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233 | ;
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234 | CCOUNT ; RECOUNT THE CATEGORIES.. USE IN CASE OF RESTART OF ANALYZE
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235 | ;
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236 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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237 | N ZI,ZJ,ZCNT,ZIDX,ZCAT,ZATR,ZTOT
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238 | S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
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239 | S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
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240 | S ZTOT=0 ; INITIALIZE OVERALL TOTAL
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241 | F ZI=1:1:@ZCBASE@(0) D ; FOR ALL CATS
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242 | . S ZCNT=0
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243 | . S ZATR=@ZCBASE@(ZI) ; THE ATTRIBUTE OF THE CATEGORY
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244 | . S ZCAT=$P(@ZCBASE@(ZATR),"^",1) ; USE IT TO LOOK UP THE CATEGORY NAME
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245 | . ; S ZIDX=$O(@ZPBASE@(ZCAT,"")) ; FIRST PATIENT IN LIST
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246 | . ; F ZJ=0:0 D Q:$O(@ZPBASE@(ZCAT,ZIDX))="" ; ALL PATIENTS IN THE LISTS
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247 | . ; . S ZCNT=ZCNT+1 ; INCREMENT THE COUNT
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248 | . ; . W ZCAT," DFN:",ZIDX," COUNT:",ZCNT,!
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249 | . ; . S ZIDX=$O(@ZPBASE@(ZCAT,ZIDX))
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250 | . S ZCNT=$$CNTLST($NA(@ZPBASE@(ZCAT)))
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251 | . S $P(@ZCBASE@(ZATR),"^",2)=ZCNT ; UPDATE THE COUNT IN THE CAT RECORD
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252 | . S ZTOT=ZTOT+ZCNT
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253 | W "TOTAL: ",ZTOT,!
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254 | Q
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255 | ;
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256 | CNTLST(INLST) ; RETURNS THE NUMBER OF ELEMENTS IN THE LIST
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257 | ; INLST IS PASSED BY NAME
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258 | N ZI,ZDX,ZCOUNT
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259 | W INLST,!
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260 | S ZCOUNT=0
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261 | S ZDX=""
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262 | F ZI=$O(@INLST@(ZDX)):0 D Q:$O(@INLST@(ZDX))="" ; LOOP UNTIL THE END
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263 | . S ZCOUNT=ZCOUNT+1
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264 | . S ZDX=$O(@INLST@(ZDX))
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265 | . W "ZDX:",ZDX," ZCNT:",ZCOUNT,!
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266 | Q ZCOUNT
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267 | ;
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268 | XCPAT(CPATCAT,CPATPARM) ; EXPORT TO FILE ALL PATIENTS IN CATEGORY CPATCAT
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269 | ;
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270 | I '$D(CPATPARM) S CPATPARM=""
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271 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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272 | N ZI,ZJ,ZC,ZPATBASE
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273 | S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
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274 | S ZI=""
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275 | F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
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276 | . S ZI=$O(@ZPATBASE@(ZI))
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277 | . D XPAT^C0CCCR(ZI,CPATPARM) ; EXPORT THE PATIENT TO A FILE
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278 | Q
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279 | ;
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280 | CPAT(CPATCAT) ; SHOW PATIENT DFNS FOR A CATEGORY CPATCAT
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281 | ;
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282 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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283 | N ZI,ZJ,ZC,ZPATBASE
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284 | S ZC=0 ; COUNT FOR SPACING THE PRINTOUT
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285 | S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
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286 | S ZI=""
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287 | F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
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288 | . S ZI=$O(@ZPATBASE@(ZI))
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289 | . S ZC=ZC+1 ; INCREMENT OUTPUT PER LINE COUNT
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290 | . W ZI," "
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291 | . I ZC=10 D ; NEW LINE
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292 | . . S ZC=0
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293 | . . W !
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294 | Q
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295 | ;
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296 | PATC(DFN) ; DISPLAY THE CATEGORY FOR THIS PATIENT
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297 | ;
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298 | N ATTR S ATTR=""
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299 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
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300 | . D ANALYZE(DFN,1) ; EXTRACT THE RIM VARIABLE FOR THIS PATIENT
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301 | S ATTR=^TMP("C0CRIM","ATTR",DFN)
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302 | I ATTR="" W "THIS PATIENT NOT ANALYZED.",! Q ;NO ATTRIBUTES FOUND
|
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303 | I $D(^TMP("C0CRIM","RIMTBL","CATS",ATTR)) D ; FOUND A CAT
|
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304 | . N CAT
|
---|
305 | . S CAT=$P(^TMP("C0CRIM","RIMTBL","CATS",ATTR),U,1) ; LOOK UP THE CAT
|
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306 | . W CAT,": ",ATTR,!
|
---|
307 | Q
|
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308 | ;
|
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309 | APUSH(AMAP,AVAL) ; ADD AVAL TO ATTRIBUTE MAP AMAP (AMAP PASSED BY NAME)
|
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310 | ; AMAP IS FORMED FOR ARRAY ACCESS: AMAP(0) IS THE COUNT
|
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311 | ; AND AMAP(N)=AVAL IS THE NTH AVAL
|
---|
312 | ; ALSO HASH ACCESS AMAP(AVAL)=N WHERE N IS THE ASSIGNED ORDER OF THE
|
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313 | ; MAP VALUE. INSTANCES OF THE MAP WILL USE $P(X,U,N)=AVAL TO PLACE
|
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314 | ; THE ATTRIBUTE IN ITS RIGHT PLACE. THE ATTRIBUTE VALUE IS STORED
|
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315 | ; SO THAT DIFFERENT MAPS CAN BE AUTOMATICALLY CROSSWALKED
|
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316 | ;
|
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317 | I '$D(@AMAP) D ; IF THE MAP DOES NOT EXIST
|
---|
318 | . S @AMAP@(0)=0 ; HAS ZERO ELEMENTS
|
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319 | S @AMAP@(0)=@AMAP@(0)+1 ;INCREMENT ELEMENT COUNT
|
---|
320 | S @AMAP@(@AMAP@(0))=AVAL ; ADD THE VALUE TO THE ARRAY
|
---|
321 | S @AMAP@(AVAL)=@AMAP@(0) ; ADD THE VALUE TO THE HASH WITH ARRAY REF
|
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322 | Q
|
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323 | ;
|
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324 | ASETUP ; SET UP GLOBALS AND VARS RIMBASE AND RIMTBL
|
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325 | I '$D(RIMBASE) S RIMBASE=$NA(^TMP("C0CRIM"))
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326 | I '$D(@RIMBASE) S @RIMBASE=""
|
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327 | I '$D(RIMTBL) S RIMTBL=$NA(^TMP("C0CRIM","RIMTBL","TABLE")) ; ATTR TABLE
|
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328 | S ^TMP("C0CRIM","TABLES","RIMTBL")=RIMTBL ; TABLE OF TABLES
|
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329 | Q
|
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330 | ;
|
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331 | AINIT ; INITIALIZE ATTRIBUTE TABLE
|
---|
332 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
|
---|
333 | K @RIMTBL
|
---|
334 | D APUSH(RIMTBL,"EXTRACTED")
|
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335 | D APUSH(RIMTBL,"NOTEXTRACTED")
|
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336 | D APUSH(RIMTBL,"HEADER")
|
---|
337 | D APUSH(RIMTBL,"NOPCP")
|
---|
338 | D APUSH(RIMTBL,"PCP")
|
---|
339 | D APUSH(RIMTBL,"PROBLEMS")
|
---|
340 | D APUSH(RIMTBL,"PROBCODE")
|
---|
341 | D APUSH(RIMTBL,"PROBNOCODE")
|
---|
342 | D APUSH(RIMTBL,"PROBDATE")
|
---|
343 | D APUSH(RIMTBL,"PROBNODATE")
|
---|
344 | D APUSH(RIMTBL,"VITALS")
|
---|
345 | D APUSH(RIMTBL,"VITALSCODE")
|
---|
346 | D APUSH(RIMTBL,"VITALSNOCODE")
|
---|
347 | D APUSH(RIMTBL,"VITALSDATE")
|
---|
348 | D APUSH(RIMTBL,"VITALSNODATE")
|
---|
349 | D APUSH(RIMTBL,"IMMUNE")
|
---|
350 | D APUSH(RIMTBL,"IMMUNECODE")
|
---|
351 | D APUSH(RIMTBL,"MEDS")
|
---|
352 | D APUSH(RIMTBL,"MEDSCODE")
|
---|
353 | D APUSH(RIMTBL,"MEDSNOCODE")
|
---|
354 | D APUSH(RIMTBL,"MEDSDATE")
|
---|
355 | D APUSH(RIMTBL,"MEDSNODATE")
|
---|
356 | D APUSH(RIMTBL,"ALERTS")
|
---|
357 | D APUSH(RIMTBL,"ALERTSCODE")
|
---|
358 | D APUSH(RIMTBL,"RESULTS")
|
---|
359 | D APUSH(RIMTBL,"RESULTSLN")
|
---|
360 | D APUSH(RIMTBL,"PROCEDURES")
|
---|
361 | D APUSH(RIMTBL,"ENCOUNTERS")
|
---|
362 | D APUSH(RIMTBL,"NOTES")
|
---|
363 | Q
|
---|
364 | ;
|
---|
365 | APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL
|
---|
366 | ; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING
|
---|
367 | ; PTBL IS THE NAME OF A TABLE IN @RIMBASE@("TABLES") - "RIMTBL"=ALL VALUES
|
---|
368 | ; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL))
|
---|
369 | I '$D(RIMBASE) D ASETUP ; FOR COMMANDLINE PROCESSING
|
---|
370 | N USETBL
|
---|
371 | I '$D(@RIMBASE@("TABLES",PTBL)) D Q ; NO TABLE
|
---|
372 | . W "ERROR NO SUCH TABLE",!
|
---|
373 | S USETBL=@RIMBASE@("TABLES",PTBL)
|
---|
374 | S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL
|
---|
375 | Q
|
---|
376 | GETPA(RTN,DFN,ISEC,IVAR) ; RETURNS ARRAY OF RIM VARIABLES FOR PATIENT DFN
|
---|
377 | ; EXAMPLE: D GETPA(.RT,2,"MEDS","MEDSSTATUSTEXT")
|
---|
378 | ; RETURNS AN ARRAY RT OF VALUES OF MEDSTATUSTEXT FOR PATIENT 2 IN P2
|
---|
379 | ; IN SECTION "MEDS"
|
---|
380 | ; P1 IS THE IEN OF THE MED WITH THE VALUE IE 2^PENDING WOULD BE STATUS
|
---|
381 | ; PENDING FOR MED 2 FOR PATIENT 2
|
---|
382 | ; RT(0) IS THE COUNT OF HOW MANY IN THE ARRAY. NULL VALUES ARE
|
---|
383 | ; RETURNED. RTN IS PASSED BY REFERENCE
|
---|
384 | ;
|
---|
385 | S RTN(0)=0 ; SET NULL DEFAULT RETURN VALUE
|
---|
386 | I '$D(RIMBASE) D AINIT ; INITIALIZE GLOBAL NAMES AND TABLES
|
---|
387 | S ZVBASE=$NA(@RIMBASE@("VARS")) ; BASE OF VARIABLES
|
---|
388 | I '$D(@ZVBASE@(DFN,ISEC,0)) D Q ; NO VARIABLES IN SECTION
|
---|
389 | . W "NO VARIABLES IN THIS SECTION FOR PATIENT ",DFN,!
|
---|
390 | N ZZI,ZZS
|
---|
391 | S ZZS=$NA(@ZVBASE@(DFN,ISEC)) ; SECTION VARIABLE ARRAY FOR THIS PATIENT
|
---|
392 | ; ZWR @ZZS@(1)
|
---|
393 | S RTN(0)=@ZZS@(0)
|
---|
394 | F ZZI=1:1:RTN(0) D ; FOR ALL PARTS OF THIS SECTION ( IE FOR ALL MEDS)
|
---|
395 | . S $P(RTN(ZZI),"^",1)=ZZI ; INDEX FOR VARIABLE
|
---|
396 | . S $P(RTN(ZZI),"^",2)=@ZZS@(ZZI,IVAR) ; THE VALUE OF THE VARIABLE
|
---|
397 | Q
|
---|
398 | ;
|
---|
399 | PATD(DFN,ISEC,IVAR) ; DISPLAY FOR PATIENT DFN THE VARIABLE IVAR
|
---|
400 | ;
|
---|
401 | N ZR
|
---|
402 | D GETPA(.ZR,DFN,ISEC,IVAR)
|
---|
403 | I $D(ZR(0)) D PARY^C0CXPATH("ZR")
|
---|
404 | E W "NOTHING RETURNED",!
|
---|
405 | Q
|
---|
406 | ;
|
---|
407 | CAGET(RTN,IATTR) ;
|
---|
408 | ; GETPA LOOKS AT RIMTBL TO FIND PATIENTS WITH ATTRIBUTE IATTR
|
---|
409 | ; IT DOES NOT SEARCH ALL PATIENTS, ONLY THE ONES WITH THE ATTRIBUTE
|
---|
410 | ; IT RETURNS AN ARRAY OF THE VALUES OF VARIABLE IVAR IN SECTION ISEC
|
---|
411 | Q
|
---|
412 | ;
|
---|
413 | PCLST(LSTRTN,IATTR) ; RETURNS ARRAY OF PATIENTS WITH ATTRIBUTE IATTR
|
---|
414 | ;
|
---|
415 | I '$D(RIMBASE) D AINIT ; INITIALIZE GLOBAL NAMES AND TABLES
|
---|
416 | N ZLST
|
---|
417 | S @LSTRTN@(0)=0 ; DEFAULT RETURN NONE
|
---|
418 | S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
|
---|
419 | S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
|
---|
420 | N ZNC ; ZNC IS NUMBER OF CATEGORIES
|
---|
421 | S ZNC=@ZCBASE@(0)
|
---|
422 | I ZNC=0 Q ; NO CATEGORIES TO SEARCH
|
---|
423 | N ZAP ; ZAP IS THE PIECE INDEX OF THE ATTRIBUTE IN THE RIM ATTR TABLE
|
---|
424 | S ZAP=@RIMBASE@("RIMTBL","TABLE",IATTR)
|
---|
425 | N ZI,ZCATTBL,ZATBL,ZCNT,ZPAT
|
---|
426 | F ZI=1:1:ZNC D ; FOR ALL CATEGORIES
|
---|
427 | . S ZATBL=@ZCBASE@(ZI) ; PULL OUT ATTR TBL FOR CAT
|
---|
428 | . I $P(ZATBL,"^",ZAP)'="" D ; CAT HAS ATTR
|
---|
429 | . . S ZCATTBL=$P(@ZCBASE@(ZATBL),"^",1) ; NAME OF TBL
|
---|
430 | . . M @LSTRTN=@ZPBASE@(ZCATTBL) ; MERGE PATS FROM CAT
|
---|
431 | S ZCNT=0 ; INITIALIZE COUNT OF PATIENTS
|
---|
432 | S ZPAT=0 ; START AT FIRST PATIENT IN LIST
|
---|
433 | F S ZPAT=$O(@LSTRTN@(ZPAT)) Q:ZPAT="" D ;
|
---|
434 | . S ZCNT=ZCNT+1
|
---|
435 | S @LSTRTN@(0)=ZCNT ; COUNT OF PATIENTS IN ARRAY
|
---|
436 | Q
|
---|
437 | ;
|
---|
438 | DCPAT(CATTR) ; DISPLAY LIST OF PATIENTS WITH ATTRIBUTE CATTR
|
---|
439 | ;
|
---|
440 | ;N ZR
|
---|
441 | D PCLST("ZR",CATTR)
|
---|
442 | I ZR(0)=0 D Q ;
|
---|
443 | . W "NO PATIENTS RETURNED",!
|
---|
444 | E D ;
|
---|
445 | . N ZI S ZI=0
|
---|
446 | . F S ZI=$O(ZR(ZI)) Q:ZI="" D ;
|
---|
447 | . . W !,ZI
|
---|
448 | . ;D PARY^C0CXPATH("ZR") ; PRINT ARRAY
|
---|
449 | . W !,"COUNT=",ZR(0)
|
---|
450 | Q
|
---|
451 | ;
|
---|
452 | RPCGV(RTN,DFN,WHICH) ; RPC GET VARS
|
---|
453 | ; RETURNS IN RTN (PASSED BY REFERENCE) THE VARS AND VALUES
|
---|
454 | ; FOUND AT INARY RTN(X)="VAR^VALUE" RTN(0) IS THE COUNT
|
---|
455 | ; DFN IS THE PATIENT NUMBER.
|
---|
456 | ; WHICH IS "ALL","MEDS","VITALS","PROBLEMS","ALERTS","RESULTS","IMMUNE"
|
---|
457 | ; OR OTHER SECTIONS AS THEY ARE ADDED
|
---|
458 | ; THIS IS MEANT TO BE AVAILABLE AS AN RPC
|
---|
459 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
|
---|
460 | S ZVBASE=$NA(@RIMBASE@("VARS")) ; BASE OF VARIABLES
|
---|
461 | S RTN(0)=0 ; DEFAULT NOTHING IS RETURNED
|
---|
462 | N ZZGI
|
---|
463 | I WHICH="ALL" D ; VARIABLES FROM ALL SECTIONS
|
---|
464 | . F ZZGI="HEADER","PROBLEMS","VITALS","MEDS","ALERTS","RESULTS","IMMUNE","PROCEDURES" D ;
|
---|
465 | . . D ZGVWRK(ZZGI) ; DO EACH SECTION
|
---|
466 | . . I $G(DEBUG)'="" W "DID ",ZZGI,!
|
---|
467 | E D ZGVWRK(WHICH) ; ONLY ONE SECTION ASKED FOR
|
---|
468 | Q
|
---|
469 | ;
|
---|
470 | ZGVWRK(ZWHICH) ; DO ONE SECTION FOR RPCGV
|
---|
471 | ;
|
---|
472 | N ZZGN ; NAME FOR SECTION VARIABLES
|
---|
473 | S ZZGN=$NA(@ZVBASE@(DFN,ZWHICH)) ; BASE OF VARS FOR SECTION
|
---|
474 | ;I '$D(@ZZGN@(0)) Q ; NO VARS FOR THIS SECTION
|
---|
475 | I $O(@ZZGN@(""),-1)="" D ;
|
---|
476 | E D ; VARS EXIST
|
---|
477 | . N ZGVI,ZGVN
|
---|
478 | . S ZGVN=$O(@ZZGN@(""),-1) ;COUNT OF VARS
|
---|
479 | . F ZGVI=1:1:ZGVN D ; FOR EACH MULTIPLE IN SECTION
|
---|
480 | . . K ZZGA N ZZGA ; TEMP ARRAY FOR SECTION VARS
|
---|
481 | . . K ZZGN2 N ZZGN2 ; NAME FOR MULTIPLE
|
---|
482 | . . S ZZGN2=$NA(@ZZGN@(ZGVI))
|
---|
483 | . . I $G(DEBUG)'="" W ZZGN2,!,$O(@ZZGN2@("")),!
|
---|
484 | . . D H2ARY^C0CXPATH("ZZGA",ZZGN2,ZGVI) ; CONVERT HASH TO ARRAY
|
---|
485 | . . ; D PARY^C0CXPATH("ZZGA")
|
---|
486 | . . D PUSHA^C0CXPATH("RTN","ZZGA") ; PUSH ARRAY INTO RETURN
|
---|
487 | Q
|
---|
488 | ;
|
---|
489 | DPATV(DFN,IWHICH) ; DISPLAY VARS FOR PATIENT DFN THAT ARE MAINTAINED IN C0CRIM
|
---|
490 | ; ALONG WITH SAMPLE VALUES.
|
---|
491 | ; IWHICH IS "ALL","MEDS","VITALS","PROBLEMS","ALERTS","RESULTS","HEADER"
|
---|
492 | N GTMP
|
---|
493 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
|
---|
494 | . D ANALYZE(DFN,1) ; REFRESH THE RIM VARIABLES
|
---|
495 | I '$D(IWHICH) S IWHICH="ALL"
|
---|
496 | D RPCGV(.GTMP,DFN,IWHICH)
|
---|
497 | D PARY^C0CXPATH("GTMP")
|
---|
498 | Q
|
---|
499 | ;
|
---|
500 | RIM2RNF(R2RTN,DFN,RWHICH) ; CONVERTS RIM VARIABLES TO RNF2 FORMAT
|
---|
501 | ; RETURN IN R2RTN, WHICH IS PASSED BY NAME
|
---|
502 | ; RWHICH IS RIM SECTION TO RETURN, DEFAULTS TO "ALL"
|
---|
503 | ;
|
---|
504 | I '$D(RWHICH) S RWHICH="ALL"
|
---|
505 | ;N R2TMP
|
---|
506 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
|
---|
507 | . D ANALYZE(DFN,1) ; REFRESH THE RIM VARIABLES
|
---|
508 | D RPCGV(.R2TMP,DFN,RWHICH) ; RETRIEVE ALL THE VARIABLES I AN ARRAY
|
---|
509 | N R2I,R2J,R2X,R2X1,R2X2,R2Y,R2Z
|
---|
510 | F R2I=1:1:R2TMP(0) D ; FOR EVERY LINE OF THE ARRAY
|
---|
511 | . S R2X=$P(R2TMP(R2I),"^",1) ; OCCURANCE
|
---|
512 | . S R2Y=$P(R2TMP(R2I),"^",2) ; VARIABLE NAME
|
---|
513 | . I $L(R2Y)<4 Q ; SKIP SHORT VARIABLES (THEY ARE FOR DEBUGGING)
|
---|
514 | . S R2Z=$P(R2TMP(R2I),"^",3) ; VALUE
|
---|
515 | . I R2X[";" D ; THERES MULTIPLES
|
---|
516 | . . S R2X1=$P(R2X,";",1) ; FIRST INDEX
|
---|
517 | . . S R2X2=$P(R2X,";",2) ; SECOND INDEX
|
---|
518 | . . S R2J=R2Y_"["_R2X2_"]" ; BUILD THE VARIABLE NAME
|
---|
519 | . . S @R2RTN@("F",R2J,1)="" ; PUT VARIABLE NAME IN FIELD MAP
|
---|
520 | . . S @R2RTN@("V",R2X1,R2J,1)=R2Z ; PUT THE VALUE IN THE ARRAY
|
---|
521 | . E D ; NO SUB-MULTIPLES
|
---|
522 | . . S @R2RTN@("F",R2Y,1)="" ; PUT VARIABLE NAME IN FIELD MAP
|
---|
523 | . . S @R2RTN@("V",R2X,R2Y,1)=R2Z ; PUT THE VALUE IN THE ARRAY
|
---|
524 | Q
|
---|
525 | ;
|
---|
526 | RIM2CSV(DFN) ; WRITE THE RIM VARIABLES FOR A PATIENT TO A CSV FILE
|
---|
527 | ;
|
---|
528 | N R2CTMP,R2CARY
|
---|
529 | D RIM2RNF("R2CTMP",DFN) ; CONVERT VARIABLES TO RNF FORMAT
|
---|
530 | D RNF2CSV^C0CRNF("R2CARY","R2CTMP","NV") ; CONVERT RNF TO CSV FORMAT
|
---|
531 | D FILEOUT^C0CRNF("R2CARY","VARS-"_DFN_".csv")
|
---|
532 | Q
|
---|
533 | ;
|
---|