[507] | 1 | /*
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| 2 | * To change this template, choose Tools | Templates
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| 3 | * and open the template in the editor.
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| 4 | */
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| 5 |
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| 6 | package gov.hhs.fha.nhinc.adaptermpimanager.HL7Parsers;
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| 7 |
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| 8 | import gov.hhs.fha.nhinc.adaptermpimanager.*;
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| 9 | import gov.hhs.fha.nhinc.mpilib.*;
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| 10 | import java.util.List;
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| 11 | import java.io.Serializable;
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| 12 | import java.util.Iterator;
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| 13 | import javax.xml.bind.JAXBElement;
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| 14 | import org.apache.commons.logging.Log;
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| 15 | import org.apache.commons.logging.LogFactory;
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| 16 | import org.hl7.v3.*;
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| 17 |
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| 18 | /**
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| 19 | *
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| 20 | * @author rayj
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| 21 | */
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| 22 | public class HL7Parser201301 {
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| 23 |
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| 24 | private static Log log = LogFactory.getLog(HL7Parser201301.class);
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| 25 |
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| 26 | public static void PrintMessageIdFromMessage(org.hl7.v3.PRPAIN201301UV message) {
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| 27 | if (!(message == null)) {
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| 28 | HL7Parser.PrintId(message.getId(), "message");
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| 29 | }
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| 30 | }
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| 31 |
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| 32 | public static String ExtractGender(PRPAMT201301UVPerson person) {
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| 33 | String genderCode = null;
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| 34 | CE administrativeGenderCode = person.getAdministrativeGenderCode();
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| 35 | if (administrativeGenderCode == null) {
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| 36 | log.info("message does not contain a gender code");
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| 37 | } else {
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| 38 | log.info("person.getAdministrativeGenderCode().getCode()=" + person.getAdministrativeGenderCode().getCode());
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| 39 | log.info("person.getAdministrativeGenderCode().getDisplayName()=" + person.getAdministrativeGenderCode().getDisplayName());
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| 40 | genderCode = person.getAdministrativeGenderCode().getCode();
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| 41 | }
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| 42 | return genderCode;
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| 43 | }
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| 44 |
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| 45 | public static String ExtractBirthdate(PRPAMT201301UVPerson person) {
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| 46 | String birthDate = null;
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| 47 | if (person.getBirthTime() == null) {
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| 48 | log.info("message does not contain a birthtime");
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| 49 | } else {
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| 50 | birthDate = person.getBirthTime().getValue();
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| 51 | if (birthDate == null) {
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| 52 | log.info("message does not contain a birthtime");
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| 53 | } else {
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| 54 | log.info("person.getBirthTime().getValue()=" + person.getBirthTime().getValue());
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| 55 | }
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| 56 | }
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| 57 | return birthDate;
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| 58 | }
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| 59 |
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| 60 | public static PersonName ExtractPersonName(PRPAMT201301UVPerson person) {
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| 61 | //temp logic to prove i can get to name - long term would want to store discrete name parts
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| 62 | //also assume one name, not multiple names
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| 63 | PersonName personname = new PersonName();
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| 64 |
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| 65 | log.info("patientPerson.getName().size() " + person.getName().size());
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| 66 | if (person.getName() != null &&
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| 67 | person.getName().size() > 0 &&
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| 68 | person.getName().get(0) != null &&
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| 69 | person.getName().get(0).getContent() != null) {
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| 70 |
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| 71 | List<Serializable> choice = person.getName().get(0).getContent();
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| 72 | log.info("choice.size()=" + choice.size());
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| 73 |
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| 74 | Iterator<Serializable> iterSerialObjects = choice.iterator();
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| 75 |
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| 76 | String nameString = "";
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| 77 | EnExplicitFamily lastname = new EnExplicitFamily();
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| 78 | EnExplicitGiven firstname = new EnExplicitGiven();
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| 79 |
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| 80 | while (iterSerialObjects.hasNext()) {
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| 81 | log.info("in iterSerialObjects.hasNext() loop");
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| 82 |
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| 83 | Serializable contentItem = iterSerialObjects.next();
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| 84 |
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| 85 | if (contentItem instanceof String) {
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| 86 | log.info("contentItem is string");
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| 87 | String strValue = (String) contentItem;
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| 88 |
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| 89 | if (nameString != null) {
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| 90 | nameString += strValue;
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| 91 | } else {
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| 92 | nameString = strValue;
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| 93 | }
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| 94 | log.info("nameString=" + nameString);
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| 95 | } else if (contentItem instanceof JAXBElement) {
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| 96 | log.info("contentItem is JAXBElement");
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| 97 |
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| 98 | JAXBElement oJAXBElement = (JAXBElement) contentItem;
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| 99 |
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| 100 | if (oJAXBElement.getValue() instanceof EnExplicitFamily) {
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| 101 | lastname = (EnExplicitFamily) oJAXBElement.getValue();
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| 102 | log.info("found lastname element; content=" + lastname.getContent());
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| 103 | } else if (oJAXBElement.getValue() instanceof EnExplicitGiven) {
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| 104 | firstname = (EnExplicitGiven) oJAXBElement.getValue();
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| 105 | log.info("found firstname element; content=" + firstname.getContent());
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| 106 | } else {
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| 107 | log.info("other name part=" + (ENXPExplicit) oJAXBElement.getValue());
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| 108 | }
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| 109 | } else {
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| 110 | log.info("contentItem is other");
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| 111 | }
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| 112 | }
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| 113 |
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| 114 | // If text string in patient name, then set in name
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| 115 | // else set in element.
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| 116 | boolean namefound = false;
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| 117 | if (lastname.getContent() != null) {
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| 118 | personname.setLastName(lastname.getContent());
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| 119 | log.info("FamilyName : " + personname.getLastName());
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| 120 | namefound = true;
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| 121 | }
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| 122 |
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| 123 | if (firstname.getContent() != null) {
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| 124 | personname.setFirstName(firstname.getContent());
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| 125 | log.info("GivenName : " + personname.getFirstName());
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| 126 | namefound = true;
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| 127 | }
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| 128 |
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| 129 | if (!namefound && !nameString.trim().contentEquals("")) {
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| 130 | log.info("setting name by nameString " + nameString);
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| 131 | personname.setLastName(nameString);
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| 132 | } else {
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| 133 | }
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| 134 | }
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| 135 | log.info("returning personname");
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| 136 | return personname;
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| 137 | }
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| 138 |
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| 139 | public static Identifiers ExtractPersonIdentifiers(PRPAMT201301UVPatient patient) {
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| 140 | Identifiers ids = new Identifiers();
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| 141 | for (II patientid : patient.getId()) {
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| 142 | Identifier id = new Identifier();
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| 143 | id.setId(patientid.getExtension());
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| 144 | id.setOrganizationId(patientid.getRoot());
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| 145 | log.info("Created id from patient identifier [organization=" + id.getOrganizationId() + "][id=" + id.getId() + "]");
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| 146 | ids.add(id);
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| 147 | }
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| 148 |
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| 149 | PRPAMT201301UVPerson person = ExtractHL7PatientPersonFromHL7Patient(patient);
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| 150 | for (II personid : person.getId()) {
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| 151 | Identifier id = new Identifier();
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| 152 | id.setId(personid.getExtension());
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| 153 | id.setOrganizationId(personid.getRoot());
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| 154 | log.info("Created id from person identifier [organization=" + id.getOrganizationId() + "][id=" + id.getId() + "]");
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| 155 | ids.add(id);
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| 156 | }
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| 157 |
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| 158 | List<PRPAMT201301UVOtherIDs> OtherIds = person.getAsOtherIDs();
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| 159 | for (PRPAMT201301UVOtherIDs otherPersonIds : OtherIds) {
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| 160 | for (II otherPersonId : otherPersonIds.getId()) {
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| 161 | Identifier id = new Identifier();
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| 162 | id.setId(otherPersonId.getExtension());
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| 163 | id.setOrganizationId(otherPersonId.getRoot());
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| 164 | log.info("Created id from person other identifier [organization=" + id.getOrganizationId() + "][id=" + id.getId() + "]");
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| 165 | ids.add(id);
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| 166 | }
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| 167 | }
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| 168 |
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| 169 | return ids;
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| 170 | }
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| 171 |
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| 172 | public static PRPAMT201301UVPerson ExtractHL7PatientPersonFromHL7Patient(PRPAMT201301UVPatient patient) {
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| 173 | JAXBElement<PRPAMT201301UVPerson> patientPersonElement = patient.getPatientPerson();
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| 174 | PRPAMT201301UVPerson patientPerson = patientPerson = patientPersonElement.getValue();
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| 175 | return patientPerson;
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| 176 | }
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| 177 |
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| 178 | public static PRPAMT201301UVPerson ExtractHL7PatientPersonFrom201301Message(org.hl7.v3.PRPAIN201301UV message) {
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| 179 | //assume one subject for now
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| 180 | PRPAMT201301UVPatient patient = ExtractHL7PatientFromMessage(message);
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| 181 | PRPAMT201301UVPerson patientPerson = ExtractHL7PatientPersonFromHL7Patient(patient);
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| 182 | return patientPerson;
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| 183 | }
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| 184 |
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| 185 | public static PRPAMT201301UVPatient ExtractHL7PatientFromMessage(org.hl7.v3.PRPAIN201301UV message) {
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| 186 | //assume one subject for now
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| 187 | PRPAMT201301UVPatient patient = null;
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| 188 | log.info("in ExtractPatient");
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| 189 |
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| 190 | if (message == null) {
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| 191 | log.info("message is null - no patient");
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| 192 | return null;
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| 193 | }
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| 194 | PRPAIN201301UVMFMIMT700701UV01ControlActProcess controlActProcess = message.getControlActProcess();
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| 195 | if (controlActProcess == null) {
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| 196 | log.info("controlActProcess is null - no patient");
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| 197 | return null;
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| 198 | }
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| 199 | HL7Parser.PrintId(controlActProcess.getId(), "controlActProcess");
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| 200 |
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| 201 | List<PRPAIN201301UVMFMIMT700701UV01Subject1> subjects = controlActProcess.getSubject();
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| 202 | if ((subjects == null) || (subjects.size() == 0)) {
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| 203 | log.info("subjects is blank/null - no patient");
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| 204 | return null;
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| 205 | }
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| 206 |
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| 207 | //for now, assume we only need one subject, this will need to be modified later
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| 208 | PRPAIN201301UVMFMIMT700701UV01Subject1 subject = subjects.get(0);
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| 209 | HL7Parser.PrintId(subject.getTypeId(), "subject");
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| 210 |
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| 211 | PRPAIN201301UVMFMIMT700701UV01RegistrationEvent registrationevent = subject.getRegistrationEvent();
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| 212 | if (registrationevent == null) {
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| 213 | log.info("registrationevent is null - no patient");
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| 214 | return null;
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| 215 | }
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| 216 | HL7Parser.PrintId(registrationevent.getTypeId(), "registrationevent");
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| 217 |
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| 218 | PRPAIN201301UVMFMIMT700701UV01Subject2 subject1 = registrationevent.getSubject1();
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| 219 | if (subject1 == null) {
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| 220 | log.info("subject1 is null - no patient");
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| 221 | return null;
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| 222 | }
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| 223 | HL7Parser.PrintId(subject1.getTypeId(), "subject1");
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| 224 |
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| 225 | patient = subject1.getPatient();
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| 226 | if (patient == null) {
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| 227 | log.info("patient is null - no patient");
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| 228 | return null;
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| 229 | }
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| 230 | HL7Parser.PrintId(patient.getId(), "patient");
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| 231 |
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| 232 | log.info("done with ExtractPatient");
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| 233 | return patient;
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| 234 | }
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| 235 |
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| 236 | public static Patient ExtractMpiPatientFromMessage(org.hl7.v3.PRPAIN201301UV message) {
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| 237 | PRPAMT201301UVPatient hl7patient = ExtractHL7PatientFromMessage(message);
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| 238 | Patient mpipatient = ExtractMpiPatientFromHL7Patient(hl7patient);
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| 239 | return mpipatient;
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| 240 | }
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| 241 |
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| 242 | public static Patient ExtractMpiPatientFromHL7Patient(PRPAMT201301UVPatient patient) {
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| 243 | PRPAMT201301UVPerson patientPerson = ExtractHL7PatientPersonFromHL7Patient(patient);
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| 244 | Patient mpiPatient = new Patient();
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| 245 | mpiPatient.setName(ExtractPersonName(patientPerson));
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| 246 | mpiPatient.setGender(ExtractGender(patientPerson));
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| 247 | String birthdateString = ExtractBirthdate(patientPerson);
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| 248 | mpiPatient.setDateOfBirth(birthdateString);
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| 249 |
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| 250 | Identifiers ids = ExtractPersonIdentifiers(patient);
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| 251 | mpiPatient.setIdentifiers(ids);
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| 252 | return mpiPatient;
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| 253 | }
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| 254 |
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| 255 | public static org.hl7.v3.PRPAIN201301UV BuildMessagePRPAIN201301UV(Patient mpiPatient) {
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| 256 | ObjectFactory factory = new ObjectFactory();
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| 257 | org.hl7.v3.PRPAIN201301UV resultMessage = new org.hl7.v3.PRPAIN201301UV();
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| 258 |
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| 259 | PRPAIN201301UVMFMIMT700701UV01Subject1 subject = new PRPAIN201301UVMFMIMT700701UV01Subject1();
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| 260 | PRPAIN201301UVMFMIMT700701UV01RegistrationEvent registrationevent = new PRPAIN201301UVMFMIMT700701UV01RegistrationEvent();
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| 261 | subject.setRegistrationEvent(registrationevent);
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| 262 |
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| 263 | PRPAIN201301UVMFMIMT700701UV01Subject2 subjectA = new PRPAIN201301UVMFMIMT700701UV01Subject2();
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| 264 | registrationevent.setSubject1(subjectA);
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| 265 |
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| 266 | PRPAMT201301UVPatient patient = new PRPAMT201301UVPatient();
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| 267 | subjectA.setPatient(patient);
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| 268 | PRPAMT201301UVPerson patientPerson = new PRPAMT201301UVPerson();
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| 269 | javax.xml.namespace.QName xmlqname = new javax.xml.namespace.QName("urn:hl7-org:v3", "patientPerson");
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| 270 | JAXBElement<PRPAMT201301UVPerson> patientPersonElement = new JAXBElement<PRPAMT201301UVPerson>(xmlqname, PRPAMT201301UVPerson.class, patientPerson);
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| 271 | patient.setPatientPerson(patientPersonElement);
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| 272 | patientPersonElement.setValue(patientPerson);
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| 273 | PRPAIN201301UVMFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201301UVMFMIMT700701UV01ControlActProcess();
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| 274 | resultMessage.setControlActProcess(controlActProcess);
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| 275 | List<PRPAIN201301UVMFMIMT700701UV01Subject1> subjects = resultMessage.getControlActProcess().getSubject();
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| 276 | subjects.add(subject);
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| 277 | if (!(mpiPatient.getDateOfBirth() == null)) {
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| 278 | TSExplicit birthtime = new TSExplicit();
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| 279 | birthtime.setValue(mpiPatient.getDateOfBirth().toString());
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| 280 | patientPerson.setBirthTime(birthtime);
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| 281 | }
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| 282 |
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| 283 | CE administrativeGenderCode = new CE();
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| 284 | administrativeGenderCode.setCode(mpiPatient.getGender());
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| 285 | patientPerson.setAdministrativeGenderCode(administrativeGenderCode);
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| 286 |
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| 287 | //
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| 288 | // Name.
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| 289 | //
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| 290 | PNExplicit name = (PNExplicit) (factory.createPNExplicit());
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| 291 | List namelist = name.getContent();
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| 292 |
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| 293 | if (mpiPatient.getName() != null && mpiPatient.getName().getLastName().length() > 0) {
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| 294 | log.info("familyName >" + mpiPatient.getName().getLastName() + "<");
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| 295 | EnExplicitFamily familyName = new EnExplicitFamily();
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| 296 | familyName.setContent(mpiPatient.getName().getLastName());
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| 297 | familyName.setPartType("FAM");
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| 298 | namelist.add(factory.createPNExplicitFamily(familyName));
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| 299 | }
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| 300 |
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| 301 | if (mpiPatient.getName() != null && mpiPatient.getName().getFirstName().length() > 0) {
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| 302 | log.info("givenName >" + mpiPatient.getName().getFirstName() + "<");
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| 303 | EnExplicitGiven givenName = new EnExplicitGiven();
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| 304 | givenName.setContent(mpiPatient.getName().getFirstName());
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| 305 | givenName.setPartType("GIV");
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| 306 | namelist.add(factory.createPNExplicitGiven(givenName));
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| 307 | }
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| 308 |
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| 309 | namelist.add(" ");
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| 310 | patientPerson.getName().add(name);
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| 311 |
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| 312 |
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| 313 |
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| 314 | for (Identifier resultPatientId : mpiPatient.getIdentifiers()) {
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| 315 | II id = new II();
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| 316 | id.setRoot(resultPatientId.getOrganizationId());
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| 317 | id.setExtension(resultPatientId.getId());
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| 318 | patient.getId().add(id);
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| 319 | }
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| 320 |
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| 321 | Identifier resultPatientId = mpiPatient.getIdentifiers().get(0);
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| 322 | II id = new II();
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| 323 | id.setRoot(resultPatientId.getOrganizationId());
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| 324 | MCCIMT000100UV01Device device = new MCCIMT000100UV01Device();
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| 325 | MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
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| 326 | device.getId().add(id);
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| 327 | sender.setDevice(device);
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| 328 | resultMessage.setSender(sender);
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| 329 |
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| 330 | return resultMessage;
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| 331 | }
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| 332 | }
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