[507] | 1 | /*
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| 2 | * To change this template, choose Tools | Templates
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| 3 | * and open the template in the editor.
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| 4 | */
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| 5 | package gov.hhs.fha.nhinc.transform.subdisc;
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| 6 |
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| 7 | import java.util.List;
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| 8 | import java.io.Serializable;
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| 9 | import java.util.Iterator;
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| 10 | import javax.xml.bind.JAXBElement;
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| 11 | import org.apache.commons.logging.Log;
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| 12 | import org.apache.commons.logging.LogFactory;
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| 13 | import org.hl7.v3.*;
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| 14 | import gov.hhs.fha.nhinc.common.nhinccommon.PersonNameType;
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| 15 | import gov.hhs.fha.nhinc.common.nhinccommon.CeType;
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| 16 |
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| 17 | /**
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| 18 | *
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| 19 | * @author MFLYNN02
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| 20 | */
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| 21 | public class HL7Extractors {
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| 22 |
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| 23 | private static Log log = LogFactory.getLog(HL7Extractors.class);
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| 24 |
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| 25 | public static PRPAIN201301UVMFMIMT700701UV01Subject1 ExtractSubjectFromMessage(org.hl7.v3.PRPAIN201301UV message) {
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| 26 | //assume one subject for now
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| 27 |
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| 28 | if (message == null) {
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| 29 | log.info("message is null - no patient");
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| 30 | return null;
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| 31 | }
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| 32 | PRPAIN201301UVMFMIMT700701UV01ControlActProcess controlActProcess = message.getControlActProcess();
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| 33 | if (controlActProcess == null) {
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| 34 | log.info("controlActProcess is null - no patient");
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| 35 | return null;
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| 36 | }
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| 37 | //HL7Parser.PrintId(controlActProcess.getId(), "controlActProcess");
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| 38 |
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| 39 | List<PRPAIN201301UVMFMIMT700701UV01Subject1> subjects = controlActProcess.getSubject();
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| 40 | if ((subjects == null) || (subjects.size() == 0)) {
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| 41 | log.info("subjects is blank/null - no patient");
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| 42 | return null;
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| 43 | }
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| 44 |
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| 45 | //for now, assume we only need one subject, this will need to be modified later
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| 46 | PRPAIN201301UVMFMIMT700701UV01Subject1 subject = subjects.get(0);
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| 47 | //HL7Parser.PrintId(subject.getTypeId(), "subject");
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| 48 |
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| 49 | return subject;
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| 50 | }
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| 51 |
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| 52 | public static PRPAIN201302UVMFMIMT700701UV01Subject1 ExtractSubjectFromMessage(org.hl7.v3.PRPAIN201302UV message) {
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| 53 | //assume one subject for now
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| 54 |
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| 55 | if (message == null) {
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| 56 | log.info("message is null - no patient");
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| 57 | return null;
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| 58 | }
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| 59 | PRPAIN201302UVMFMIMT700701UV01ControlActProcess controlActProcess = message.getControlActProcess();
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| 60 | if (controlActProcess == null) {
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| 61 | log.info("controlActProcess is null - no patient");
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| 62 | return null;
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| 63 | }
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| 64 | //HL7Parser.PrintId(controlActProcess.getId(), "controlActProcess");
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| 65 |
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| 66 | List<PRPAIN201302UVMFMIMT700701UV01Subject1> subjects = controlActProcess.getSubject();
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| 67 | if ((subjects == null) || (subjects.size() == 0)) {
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| 68 | log.info("subjects is blank/null - no patient");
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| 69 | return null;
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| 70 | }
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| 71 |
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| 72 | //for now, assume we only need one subject, this will need to be modified later
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| 73 | PRPAIN201302UVMFMIMT700701UV01Subject1 subject = subjects.get(0);
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| 74 | //HL7Parser.PrintId(subject.getTypeId(), "subject");
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| 75 |
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| 76 | return subject;
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| 77 | }
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| 78 |
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| 79 | public static PRPAIN201303UVMFMIMT700701UV01Subject1 ExtractSubjectFromMessage(org.hl7.v3.PRPAIN201303UV message) {
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| 80 | //assume one subject for now
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| 81 |
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| 82 | if (message == null) {
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| 83 | log.info("message is null - no patient");
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| 84 | return null;
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| 85 | }
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| 86 | PRPAIN201303UVMFMIMT700701UV01ControlActProcess controlActProcess = message.getControlActProcess();
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| 87 | if (controlActProcess == null) {
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| 88 | log.info("controlActProcess is null - no patient");
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| 89 | return null;
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| 90 | }
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| 91 | //HL7Parser.PrintId(controlActProcess.getId(), "controlActProcess");
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| 92 |
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| 93 | List<PRPAIN201303UVMFMIMT700701UV01Subject1> subjects = controlActProcess.getSubject();
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| 94 | if ((subjects == null) || (subjects.size() == 0)) {
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| 95 | log.info("subjects is blank/null - no patient");
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| 96 | return null;
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| 97 | }
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| 98 |
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| 99 | //for now, assume we only need one subject, this will need to be modified later
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| 100 | PRPAIN201303UVMFMIMT700701UV01Subject1 subject = subjects.get(0);
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| 101 | //HL7Parser.PrintId(subject.getTypeId(), "subject");
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| 102 |
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| 103 | return subject;
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| 104 | }
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| 105 |
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| 106 | public static PRPAIN201310UVMFMIMT700711UV01Subject1 ExtractSubjectFromMessage(org.hl7.v3.PRPAIN201310UV message) {
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| 107 | //assume one subject for now
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| 108 |
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| 109 | if (message == null) {
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| 110 | log.info("message is null - no patient");
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| 111 | return null;
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| 112 | }
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| 113 |
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| 114 | PRPAIN201310UVMFMIMT700711UV01ControlActProcess controlActProcess = message.getControlActProcess();
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| 115 | if (controlActProcess == null) {
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| 116 | log.info("controlActProcess is null - no patient");
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| 117 | return null;
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| 118 | }
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| 119 | //HL7Parser.PrintId(controlActProcess.getId(), "controlActProcess");
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| 120 |
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| 121 | List<PRPAIN201310UVMFMIMT700711UV01Subject1> subjects = controlActProcess.getSubject();
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| 122 | if ((subjects == null) || (subjects.size() == 0)) {
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| 123 | log.info("subjects is blank/null - no patient");
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| 124 | return null;
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| 125 | }
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| 126 |
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| 127 | //for now, assume we only need one subject, this will need to be modified later
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| 128 | PRPAIN201310UVMFMIMT700711UV01Subject1 subject = subjects.get(0);
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| 129 | //HL7Parser.PrintId(subject.getTypeId(), "subject");
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| 130 |
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| 131 | return subject;
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| 132 | }
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| 133 |
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| 134 | public static PRPAMT201301UVPatient ExtractHL7PatientFromMessage(org.hl7.v3.PRPAIN201301UV message) {
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| 135 | PRPAMT201301UVPatient patient = null;
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| 136 | log.info("in ExtractPatient");
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| 137 |
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| 138 | PRPAIN201301UVMFMIMT700701UV01Subject1 subject = ExtractSubjectFromMessage(message);
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| 139 | if (subject == null) {
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| 140 | return null;
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| 141 | }
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| 142 | PRPAIN201301UVMFMIMT700701UV01RegistrationEvent registrationevent = subject.getRegistrationEvent();
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| 143 | if (registrationevent == null) {
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| 144 | log.info("registrationevent is null - no patient");
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| 145 | return null;
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| 146 | }
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| 147 | //HL7Parser.PrintId(registrationevent.getTypeId(), "registrationevent");
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| 148 |
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| 149 | PRPAIN201301UVMFMIMT700701UV01Subject2 subject1 = registrationevent.getSubject1();
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| 150 | if (subject1 == null) {
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| 151 | log.info("subject1 is null - no patient");
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| 152 | return null;
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| 153 | }
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| 154 | //HL7Parser.PrintId(subject1.getTypeId(), "subject1");
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| 155 |
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| 156 | patient = subject1.getPatient();
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| 157 | if (patient == null) {
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| 158 | log.info("patient is null - no patient");
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| 159 | return null;
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| 160 | }
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| 161 | //HL7Parser.PrintId(patient.getId(), "patient");
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| 162 |
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| 163 | log.info("done with ExtractPatient");
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| 164 | return patient;
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| 165 | }
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| 166 |
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| 167 | public static PRPAMT201302UVPatient ExtractHL7PatientFromMessage(org.hl7.v3.PRPAIN201302UV message) {
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| 168 | PRPAMT201302UVPatient patient = null;
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| 169 | log.info("in ExtractPatient");
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| 170 |
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| 171 | PRPAIN201302UVMFMIMT700701UV01Subject1 subject = ExtractSubjectFromMessage(message);
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| 172 | if (subject == null) {
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| 173 | return null;
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| 174 | }
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| 175 | PRPAIN201302UVMFMIMT700701UV01RegistrationEvent registrationevent = subject.getRegistrationEvent();
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| 176 | if (registrationevent == null) {
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| 177 | log.info("registrationevent is null - no patient");
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| 178 | return null;
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| 179 | }
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| 180 | //HL7Parser.PrintId(registrationevent.getTypeId(), "registrationevent");
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| 181 |
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| 182 | PRPAIN201302UVMFMIMT700701UV01Subject2 subject1 = registrationevent.getSubject1();
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| 183 | if (subject1 == null) {
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| 184 | log.info("subject1 is null - no patient");
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| 185 | return null;
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| 186 | }
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| 187 | //HL7Parser.PrintId(subject1.getTypeId(), "subject1");
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| 188 |
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| 189 | patient = subject1.getPatient();
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| 190 | if (patient == null) {
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| 191 | log.info("patient is null - no patient");
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| 192 | return null;
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| 193 | }
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| 194 | //HL7Parser.PrintId(patient.getId(), "patient");
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| 195 |
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| 196 | log.info("done with ExtractPatient");
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| 197 | return patient;
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| 198 | }
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| 199 |
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| 200 | public static PRPAMT201305UVPatient ExtractHL7PatientFromMessage(org.hl7.v3.PRPAIN201303UV message) {
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| 201 | PRPAMT201305UVPatient patient = null;
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| 202 | log.info("in ExtractPatient");
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| 203 |
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| 204 | PRPAIN201303UVMFMIMT700701UV01Subject1 subject = ExtractSubjectFromMessage(message);
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| 205 | if (subject == null) {
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| 206 | return null;
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| 207 | }
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| 208 | PRPAIN201303UVMFMIMT700701UV01RegistrationEvent registrationevent = subject.getRegistrationEvent();
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| 209 | if (registrationevent == null) {
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| 210 | log.info("registrationevent is null - no patient");
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| 211 | return null;
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| 212 | }
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| 213 | //HL7Parser.PrintId(registrationevent.getTypeId(), "registrationevent");
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| 214 |
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| 215 | PRPAIN201303UVMFMIMT700701UV01Subject2 subject1 = registrationevent.getSubject1();
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| 216 | if (subject1 == null) {
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| 217 | log.info("subject1 is null - no patient");
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| 218 | return null;
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| 219 | }
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| 220 | //HL7Parser.PrintId(subject1.getTypeId(), "subject1");
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| 221 |
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| 222 | patient = subject1.getPatient();
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| 223 | if (patient == null) {
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| 224 | log.info("patient is null - no patient");
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| 225 | return null;
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| 226 | }
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| 227 | //HL7Parser.PrintId(patient.getId(), "patient");
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| 228 |
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| 229 | log.info("done with ExtractPatient");
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| 230 | return patient;
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| 231 | }
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| 232 |
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| 233 | public static PRPAMT201304UVPatient ExtractHL7PatientFromMessage(org.hl7.v3.PRPAIN201310UV message) {
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| 234 | PRPAMT201304UVPatient patient = null;
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| 235 | log.info("in ExtractPatient");
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| 236 |
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| 237 | PRPAIN201310UVMFMIMT700711UV01Subject1 subject = ExtractSubjectFromMessage(message);
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| 238 | if (subject == null) {
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| 239 | return null;
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| 240 | }
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| 241 |
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| 242 | PRPAIN201310UVMFMIMT700711UV01RegistrationEvent registrationevent = subject.getRegistrationEvent();
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| 243 | if (registrationevent == null) {
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| 244 | log.info("registrationevent is null - no patient");
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| 245 | return null;
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| 246 | }
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| 247 | //HL7Parser.PrintId(registrationevent.getTypeId(), "registrationevent");
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| 248 |
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| 249 | PRPAIN201310UVMFMIMT700711UV01Subject2 subject1 = registrationevent.getSubject1();
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| 250 | if (subject1 == null) {
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| 251 | log.info("subject1 is null - no patient");
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| 252 | return null;
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| 253 | }
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| 254 | //HL7Parser.PrintId(subject1.getTypeId(), "subject1");
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| 255 |
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| 256 |
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| 257 | patient = subject1.getPatient();
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| 258 | if (patient == null) {
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| 259 | log.info("patient is null - no patient");
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| 260 | return null;
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| 261 | }
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| 262 | //HL7Parser.PrintId(patient.getId(), "patient");
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| 263 |
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| 264 | log.info("done with ExtractPatient");
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| 265 | return patient;
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| 266 | }
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| 267 |
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| 268 | /**
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| 269 | * This method translates a List<PN> into an PersonName object.
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| 270 | *
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| 271 | * @param The List of PN objects to be translated
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| 272 | * @param The Person object
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| 273 | */
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| 274 | public static PersonNameType translatePNListtoPersonNameType(List<PNExplicit> names) {
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| 275 | log.debug("HL7Extractor.translatePNListtoPersonNameType() -- Begin");
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| 276 | PersonNameType personName = new PersonNameType();
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| 277 | // NameType
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| 278 | if (names.get(0).getUse().size() > 0) {
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| 279 | CeType nameType = new CeType();
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| 280 | nameType.setCode(names.get(0).getUse().get(0));
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| 281 | personName.setNameType(nameType);
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| 282 | }
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| 283 | // Name parts
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| 284 | if (names.size() > 0 &&
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| 285 | names.get(0).getContent() != null) {
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| 286 | List<Serializable> choice = names.get(0).getContent();
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| 287 | Iterator<Serializable> iterSerialObjects = choice.iterator();
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| 288 |
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| 289 | String nameString = "";
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| 290 | EnExplicitFamily familyName = new EnExplicitFamily();
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| 291 | EnExplicitGiven givenName = new EnExplicitGiven();
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| 292 | Boolean hasName = false;
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| 293 |
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| 294 | while (iterSerialObjects.hasNext()) {
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| 295 | Serializable contentItem = iterSerialObjects.next();
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| 296 |
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| 297 | if (contentItem instanceof String) {
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| 298 | String strValue = (String) contentItem;
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| 299 | if (nameString != null) {
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| 300 | nameString += strValue;
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| 301 | } else {
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| 302 | nameString = strValue;
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| 303 | }
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| 304 | System.out.println("Here is the contents of the string: " + strValue);
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| 305 | } else if (contentItem instanceof JAXBElement) {
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| 306 | JAXBElement oJAXBElement = (JAXBElement) contentItem;
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| 307 | log.debug("Found JAXBElement");
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| 308 | if (oJAXBElement.getValue() instanceof EnExplicitFamily) {
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| 309 | familyName = (EnExplicitFamily) oJAXBElement.getValue();
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| 310 | log.debug("Found FamilyName " + familyName.getContent());
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| 311 | hasName = true;
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| 312 | } else if (oJAXBElement.getValue() instanceof EnExplicitGiven) {
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| 313 | givenName = (EnExplicitGiven) oJAXBElement.getValue();
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| 314 | log.debug("Found GivenName " + givenName.getContent());
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| 315 | hasName = true;
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| 316 | }
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| 317 | }
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| 318 | }
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| 319 | // If text string, then set in familyName
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| 320 | // else set in element.
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| 321 | if (nameString != null && hasName == false) {
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| 322 | log.debug("set org name text ");
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| 323 | personName.setFamilyName(nameString);
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| 324 | } else {
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| 325 | if (givenName.getContent() != null &&
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| 326 | givenName.getContent().length() > 0) {
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| 327 | log.debug("set org name given ");
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| 328 | personName.setGivenName(givenName.getContent());
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| 329 |
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| 330 | }
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| 331 | if (familyName.getContent() != null &&
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| 332 | familyName.getContent().length() > 0) {
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| 333 | log.debug("set org name family ");
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| 334 | personName.setFamilyName(familyName.getContent());
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| 335 | }
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| 336 |
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| 337 | }
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| 338 | }
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| 339 | log.debug("HL7Extractor.translatePNListtoPersonNameType() -- End");
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| 340 | return personName;
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| 341 |
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| 342 | }
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| 343 |
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| 344 | /**
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| 345 | * This method translates a List of EN objects to a PersonName object.
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| 346 | *
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| 347 | * @param The List<EN> objects to be translated
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| 348 | * @param The PersonName object
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| 349 | */
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| 350 | public static PersonNameType translateENListtoPersonNameType(List<ENExplicit> names) {
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| 351 | log.debug("HL7Extractor.translateENListtoPersonNameType() -- Begin");
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| 352 | PersonNameType personName = new PersonNameType();
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| 353 | // NameType
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| 354 | if (names.size() > 0 && names.get(0).getUse().size() > 0) {
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| 355 | CeType nameType = new CeType();
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| 356 | nameType.setCode(names.get(0).getUse().get(0));
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| 357 | personName.setNameType(nameType);
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| 358 | }
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| 359 | if (names.size() > 0 &&
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| 360 | names.get(0).getContent() != null) {
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| 361 | List<Serializable> choice = names.get(0).getContent();
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| 362 | Iterator<Serializable> iterSerialObjects = choice.iterator();
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| 363 |
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| 364 | String nameString = "";
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| 365 | EnExplicitFamily familyName = new EnExplicitFamily();
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| 366 | EnExplicitGiven givenName = new EnExplicitGiven();
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| 367 |
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| 368 | while (iterSerialObjects.hasNext()) {
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| 369 | Serializable contentItem = iterSerialObjects.next();
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| 370 |
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| 371 | if (contentItem instanceof String) {
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| 372 | String strValue = (String) contentItem;
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| 373 | if (nameString != null) {
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| 374 | nameString += strValue;
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| 375 | } else {
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| 376 | nameString = strValue;
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| 377 | }
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| 378 | System.out.println("Here is the contents of the string: " + strValue);
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| 379 | } else if (contentItem instanceof JAXBElement) {
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| 380 | JAXBElement oJAXBElement = (JAXBElement) contentItem;
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| 381 |
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| 382 | if (oJAXBElement.getValue() instanceof EnExplicitFamily) {
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| 383 | familyName = (EnExplicitFamily) oJAXBElement.getValue();
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| 384 |
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| 385 | } else if (oJAXBElement.getValue() instanceof EnExplicitGiven) {
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| 386 | givenName = (EnExplicitGiven) oJAXBElement.getValue();
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| 387 | }
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| 388 | }
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| 389 |
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| 390 | }
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| 391 | // If text string in HomeCommunity.representativeOrg, then set in familyName
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| 392 | // else set in element.
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| 393 | if (nameString != null) {
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| 394 | log.debug("set org name text ");
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| 395 | personName.setFamilyName(nameString);
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| 396 | } else {
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| 397 | if (givenName.getContent() != null &&
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| 398 | givenName.getContent().length() > 0) {
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| 399 | log.debug("set org name given ");
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| 400 | personName.setGivenName(givenName.getContent());
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| 401 |
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| 402 | }
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| 403 | if (familyName.getContent() != null &&
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| 404 | familyName.getContent().length() > 0) {
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| 405 | log.debug("set org name family ");
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| 406 | personName.setFamilyName(familyName.getContent());
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| 407 | }
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| 408 |
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| 409 | }
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| 410 |
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| 411 | }
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| 412 | log.debug("HL7Extractor.translateENListtoPersonNameType() -- End");
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| 413 | return personName;
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| 414 | }
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| 415 |
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| 416 | public static PRPAMT201301UVPerson ExtractHL7PatientPersonFromHL7Patient(PRPAMT201301UVPatient patient) {
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| 417 | JAXBElement<PRPAMT201301UVPerson> patientPersonElement = patient.getPatientPerson();
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| 418 | PRPAMT201301UVPerson patientPerson = patientPerson = patientPersonElement.getValue();
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| 419 | return patientPerson;
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| 420 | }
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| 421 |
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| 422 | public static PRPAMT201302UVPerson ExtractHL7PatientPersonFromHL7Patient(PRPAMT201302UVPatient patient) {
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| 423 | JAXBElement<PRPAMT201302UVPerson> patientPersonElement = patient.getPatientPerson();
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| 424 | PRPAMT201302UVPerson patientPerson = patientPerson = patientPersonElement.getValue();
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| 425 | return patientPerson;
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| 426 | }
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| 427 |
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| 428 | public static PRPAMT201301UVPerson ExtractHL7PatientPersonFrom201301Message(org.hl7.v3.PRPAIN201301UV message) {
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| 429 | //assume one subject for now
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| 430 | PRPAMT201301UVPatient patient = ExtractHL7PatientFromMessage(message);
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| 431 | PRPAMT201301UVPerson patientPerson = ExtractHL7PatientPersonFromHL7Patient(patient);
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| 432 | return patientPerson;
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| 433 | }
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| 434 |
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| 435 | public static PRPAMT201302UVPerson ExtractHL7PatientPersonFrom201302Message(org.hl7.v3.PRPAIN201302UV message) {
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| 436 | //assume one subject for now
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| 437 | PRPAMT201302UVPatient patient = ExtractHL7PatientFromMessage(message);
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| 438 | PRPAMT201302UVPerson patientPerson = ExtractHL7PatientPersonFromHL7Patient(patient);
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| 439 | return patientPerson;
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| 440 | }
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| 441 | }
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