source: ccr/trunk/p/C0CCCR.m@ 488

Last change on this file since 488 was 441, checked in by George Lilly, 16 years ago

batch processing and options

File size: 9.5 KB
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1C0CCCR ; CCDCCR/GPL - CCR MAIN PROCESSING; 6/6/08
2 ;;0.1;CCDCCR;nopatch;noreleasedate
3 ;Copyright 2008,2009 George Lilly, University of Minnesota.
4 ;Licensed under the terms of the GNU General Public License.
5 ;See attached copy of the License.
6 ;
7 ;This program is free software; you can redistribute it and/or modify
8 ;it under the terms of the GNU General Public License as published by
9 ;the Free Software Foundation; either version 2 of the License, or
10 ;(at your option) any later version.
11 ;
12 ;This program is distributed in the hope that it will be useful,
13 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
14 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 ;GNU General Public License for more details.
16 ;
17 ;You should have received a copy of the GNU General Public License along
18 ;with this program; if not, write to the Free Software Foundation, Inc.,
19 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
20 ;
21 ; EXPORT A CCR
22 ;
23EXPORT ; EXPORT ENTRY POINT FOR CCR
24 ; Select a patient.
25 S DIC=2,DIC(0)="AEMQ" D ^DIC
26 I Y<1 Q ; EXIT
27 S DFN=$P(Y,U,1) ; SET THE PATIENT
28 D XPAT(DFN) ; EXPORT TO A FILE
29 Q
30 ;
31XPAT(DFN,XPARMS,DIR,FN) ; EXPORT ONE PATIENT TO A FILE
32 ; DIR IS THE DIRECTORY, DEFAULTS IF NULL TO ^TMP("C0CCCR","ODIR")
33 ; FN IS FILE NAME, DEFAULTS IF NULL
34 N CCRGLO,UDIR,UFN
35 I '$D(DIR) S UDIR=""
36 E S UDIR=DIR
37 I '$D(FN) S UFN="" ; IF FILENAME IS NOT PASSED
38 E S UFN=FN
39 I '$D(XPARMS) S XPARMS=""
40 D CCRRPC(.CCRGLO,DFN,XPARMS,"CCR")
41 S OARY=$NA(^TMP("C0CCCR",$J,DFN,"CCR",1))
42 S ONAM=UFN
43 I UFN="" S ONAM="PAT_"_DFN_"_CCR_V1_0_22.xml"
44 S ODIRGLB=$NA(^TMP("C0CCCR","ODIR"))
45 S ^TMP("C0CCCR","FNAME",DFN)=ONAM ; FILE NAME FOR BATCH USE
46 I $D(^TMP("GPLCCR","ODIR")) S @ODIRGLB=^TMP("GPLCCR","ODIR")
47 I '$D(@ODIRGLB) D ; IF NOT ODIR HAS BEEN SET
48 . W "Warning.. please set ^TMP(""C0CCCR"",""ODIR"")=""output path""",! Q
49 . ;S @ODIRGLB="/home/glilly/CCROUT"
50 . ;S @ODIRGLB="/home/cedwards/"
51 . S @ODIRGLB="/opt/wv/p/"
52 S ODIR=UDIR
53 I UDIR="" S ODIR=@ODIRGLB
54 N ZY
55 S ZY=$$OUTPUT^C0CXPATH(OARY,ONAM,ODIR)
56 W !,$P(ZY,U,2),!
57 Q
58 ;
59DCCR(DFN) ; DISPLAY A CCR THAT HAS JUST BEEN EXTRACTED
60 ;
61 N G1
62 S G1=$NA(^TMP("C0CCCR",$J,DFN,"CCR"))
63 I $D(@G1@(0)) D ; CCR EXISTS
64 . D PARY^C0CXPATH(G1)
65 E W "CCR NOT CREATED, RUN D XPAT^C0CCCR(DFN,"""","""") FIRST",!
66 Q
67 ;
68CCRRPC(CCRGRTN,DFN,CCRPARMS,CCRPART) ;RPC ENTRY POINT FOR CCR OUTPUT
69 ; CCRGRTN IS RETURN ARRAY PASSED BY NAME
70 ; DFN IS PATIENT IEN
71 ; CCRPART IS "CCR" FOR ENTIRE CCR, OR SECTION NAME FOR A PART
72 ; OF THE CCR BODY.. PARTS INCLUDE "PROBLEMS" "VITALS" ETC
73 ; CCRPARMS ARE PARAMETERS THAT AFFECT THE EXTRACTION
74 ; IN THE FORM "PARM1:VALUE1^PARM2:VALUE2"
75 ; EXAMPLE: "LABLIMIT:T-60" TO LIMIT LAB EXTRACTION TO THE LAST 60 DAYS
76 ; SEE C0CPARMS FOR A COMPLETE LIST OF SUPPORTED PARAMETERS
77 I '$D(DEBUG) S DEBUG=0
78 S CCD=0 ; NEED THIS FLAG TO DISTINGUISH FROM CCD
79 D SET^C0CPARMS(CCRPARMS) ;SET PARAMETERS WITH CCRPARMS AS OVERRIDES
80 I '$D(TESTLAB) S TESTLAB=0 ; FLAG FOR TESTING RESULTS SECTION
81 I '$D(TESTALERT) S TESTALERT=1 ; FLAG FOR TESTING ALERTS SECTION
82 I '$D(TESTMEDS) S TESTMEDS=0 ; FLAG FOR TESTING C0CMED SECTION
83 S TGLOBAL=$NA(^TMP("C0CCCR",$J,"TEMPLATE")) ; GLOBAL FOR STORING TEMPLATE
84 S CCRGLO=$NA(^TMP("C0CCCR",$J,DFN,"CCR")) ; GLOBAL FOR BUILDING THE CCR
85 S ACTGLO=$NA(^TMP("C0CCCR",$J,DFN,"ACTORS")) ; GLOBAL FOR ALL ACTORS
86 ; TO GET PART OF THE CCR RETURNED, PASS CCRPART="PROBLEMS" ETC
87 S CCRGRTN=$NA(^TMP("C0CCCR",$J,DFN,CCRPART)) ; RTN GLO NM OF PART OR ALL
88 D LOAD^C0CCCR0(TGLOBAL) ; LOAD THE CCR TEMPLATE
89 D CP^C0CXPATH(TGLOBAL,CCRGLO) ; COPY THE TEMPLATE TO CCR GLOBAL
90 ;
91 ; DELETE THE BODY, ACTORS AND SIGNATURES SECTIONS FROM GLOBAL
92 ; THESE WILL BE POPULATED AFTER CALLS TO THE XPATH ROUTINES
93 D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Body")
94 D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Actors")
95 D REPLACE^C0CXPATH(CCRGLO,"","//ContinuityOfCareRecord/Signatures")
96 I DEBUG F I=1:1:@CCRGLO@(0) W @CCRGLO@(I),!
97 ;
98 D HDRMAP(CCRGLO,DFN) ; MAP HEADER VARIABLES
99 ;
100 K ^TMP("C0CCCR",$J,"CCRSTEP") ; KILL GLOBAL PRIOR TO ADDING TO IT
101 S CCRXTAB=$NA(^TMP("C0CCCR",$J,"CCRSTEP")) ; GLOBAL TO STORE CCR STEPS
102 D INITSTPS(CCRXTAB) ; INITIALIZED CCR PROCESSING STEPS
103 N PROCI,XI,TAG,RTN,CALL,XPATH,IXML,OXML,INXML,CCRBLD
104 F PROCI=1:1:@CCRXTAB@(0) D ; PROCESS THE CCR BODY SECTIONS
105 . S XI=@CCRXTAB@(PROCI) ; CALL COPONENTS TO PARSE
106 . S RTN=$P(XI,";",2) ; NAME OF ROUTINE TO CALL
107 . S TAG=$P(XI,";",1) ; LABEL INSIDE ROUTINE TO CALL
108 . S XPATH=$P(XI,";",3) ; XPATH TO XML TO PASS TO ROUTINE
109 . D QUERY^C0CXPATH(TGLOBAL,XPATH,"INXML") ; EXTRACT XML TO PASS
110 . S IXML="INXML"
111 . S OXML=$P(XI,";",4) ; ARRAY FOR SECTION VALUES
112 . ; K @OXML ; KILL EXPECTED OUTPUT ARRAY
113 . ; W OXML,!
114 . S CALL="D "_TAG_"^"_RTN_"(IXML,DFN,OXML)" ; SETUP THE CALL
115 . W "RUNNING ",CALL,!
116 . X CALL
117 . ; NOW INSERT THE RESULTS IN THE CCR BUFFER
118 . I @OXML@(0)'=0 D ; THERE IS A RESULT
119 . . D INSERT^C0CXPATH(CCRGLO,OXML,"//ContinuityOfCareRecord/Body")
120 . . I DEBUG F C0CI=1:1:@OXML@(0) W @OXML@(C0CI),!
121 N ACTT,ATMP,ACTT2,ATMP2 ; TEMPORARY ARRAY SYMBOLS FOR ACTOR PROCESSING
122 D ACTLST^C0CCCR(CCRGLO,ACTGLO) ; GEN THE ACTOR LIST
123 D QUERY^C0CXPATH(TGLOBAL,"//ContinuityOfCareRecord/Actors","ACTT")
124 D EXTRACT^C0CACTOR("ACTT",ACTGLO,"ACTT2")
125 D INSINNER^C0CXPATH(CCRGLO,"ACTT2","//ContinuityOfCareRecord/Actors")
126 N TRIMI,J,DONE S DONE=0
127 F TRIMI=0:0 D Q:DONE ; DELETE UNTIL ALL EMPTY ELEMENTS ARE GONE
128 . S J=$$TRIM^C0CXPATH(CCRGLO) ; DELETE EMPTY ELEMENTS
129 . I DEBUG W "TRIMMED",J,!
130 . I J=0 S DONE=1 ; DONE WHEN TRIM RETURNS FALSE
131 Q
132 ;
133INITSTPS(TAB) ; INITIALIZE CCR PROCESSING STEPS
134 ; TAB IS PASSED BY NAME
135 I DEBUG W "TAB= ",TAB,!
136 ; ORDER FOR CCR IS PROBLEMS,FAMILYHISTORY,SOCIALHISTORY,MEDICATIONS,VITALSIGNS,RESULTS,HEALTHCAREPROVIDERS
137 D PUSH^C0CXPATH(TAB,"EXTRACT;C0CPROBS;//ContinuityOfCareRecord/Body/Problems;^TMP(""C0CCCR"",$J,DFN,""PROBLEMS"")")
138 D PUSH^C0CXPATH(TAB,"EXTRACT;C0CMED;//ContinuityOfCareRecord/Body/Medications;^TMP(""C0CCCR"",$J,DFN,""MEDICATIONS"")")
139 D PUSH^C0CXPATH(TAB,"EXTRACT;C0CVITAL;//ContinuityOfCareRecord/Body/VitalSigns;^TMP(""C0CCCR"",$J,DFN,""VITALS"")")
140 D PUSH^C0CXPATH(TAB,"MAP;C0CLABS;//ContinuityOfCareRecord/Body/Results;^TMP(""C0CCCR"",$J,DFN,""RESULTS"")")
141 D PUSH^C0CXPATH(TAB,"MAP;C0CIMMU;//ContinuityOfCareRecord/Body/Immunizations;^TMP(""C0CCCR"",$J,DFN,""IMMUNE"")")
142 I TESTALERT D PUSH^C0CXPATH(TAB,"EXTRACT;C0CALERT;//ContinuityOfCareRecord/Body/Alerts;^TMP(""C0CCCR"",$J,DFN,""ALERTS"")")
143 Q
144 ;
145HDRMAP(CXML,DFN) ; MAP HEADER VARIABLES: FROM, TO ECT
146 N VMAP S VMAP=$NA(^TMP("C0CCCR",$J,DFN,"HEADER"))
147 ; K @VMAP
148 S @VMAP@("DATETIME")=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
149 ; I IHDR="" D ; HEADER ARRAY IS NOT PROVIDED, USE DEFAULTS
150 D ; ALWAYS MAP THESE VARIABLES
151 . S @VMAP@("ACTORPATIENT")="ACTORPATIENT_"_DFN
152 . S @VMAP@("ACTORFROM")="ACTORORGANIZATION_"_DUZ ; FROM DUZ - ???
153 . S @VMAP@("ACTORFROM2")="ACTORSYSTEM_1" ; SECOND FROM IS THE SYSTEM
154 . S @VMAP@("ACTORTO")="ACTORPATIENT_"_DFN ; FOR TEST PURPOSES
155 . S @VMAP@("PURPOSEDESCRIPTION")="CEND PHR" ; FOR TEST PURPOSES
156 . S @VMAP@("ACTORTOTEXT")="Patient" ; FOR TEST PURPOSES
157 . ; THIS IS THE USE CASE FOR THE PHR WHERE "TO" IS THE PATIENT
158 ;I IHDR'="" D ; HEADER VALUES ARE PROVIDED
159 ;. D CP^C0CXPATH(IHDR,VMAP) ; COPY HEADER VARIABLES TO MAP ARRAY
160 N CTMP
161 D MAP^C0CXPATH(CXML,VMAP,"CTMP")
162 D CP^C0CXPATH("CTMP",CXML)
163 N HRIMVARS ;
164 S HRIMVARS=$NA(^TMP("C0CRIM","VARS",DFN,"HEADER")) ; TO PERSIST VARS
165 M @HRIMVARS@(1)=@VMAP ; PERSIST THE HEADER VARIABLES IN RIM TABLE
166 S @HRIMVARS@(0)=1 ; ONLY ONE SET OF HEADERS PER PATIENT
167 Q
168 ;
169ACTLST(AXML,ACTRTN) ; RETURN THE ACTOR LIST FOR THE XML IN AXML
170 ; AXML AND ACTRTN ARE PASSED BY NAME
171 ; EACH ACTOR RECORD HAS 3 PARTS - IE IF OBJECTID=ACTORPATIENT_2
172 ; P1= OBJECTID - ACTORPATIENT_2
173 ; P2= OBJECT TYPE - PATIENT OR PROVIDER OR SOFTWARE
174 ;OR INSTITUTION
175 ; OR PERSON(IN PATIENT FILE IE NOK)
176 ; P3= IEN RECORD NUMBER FOR ACTOR - 2
177 N I,J,K,L
178 K @ACTRTN ; CLEAR RETURN ARRAY
179 F I=1:1:@AXML@(0) D ; SCAN ALL LINES
180 . I @AXML@(I)?.E1"<ActorID>".E D ; THERE IS AN ACTOR THIS LINE
181 . . S J=$P($P(@AXML@(I),"<ActorID>",2),"</ActorID>",1)
182 . . I DEBUG W "<ActorID>=>",J,!
183 . . I J'="" S K(J)="" ; HASHING ACTOR
184 . . ; TO GET RID OF DUPLICATES
185 S I="" ; GOING TO $O THROUGH THE HASH
186 F J=0:0 D Q:$O(K(I))=""
187 . S I=$O(K(I)) ; WALK THROUGH THE HASH OF ACTORS
188 . S $P(L,U,1)=I ; FIRST PIECE IS THE OBJECT ID
189 . S $P(L,U,2)=$P($P(I,"ACTOR",2),"_",1) ; ACTOR TYPE
190 . S $P(L,U,3)=$P(I,"_",2) ; IEN RECORD NUMBER FOR ACTOR
191 . D PUSH^C0CXPATH(ACTRTN,L) ; ADD THE ACTOR TO THE RETURN ARRAY
192 Q
193 ;
194TEST ; RUN ALL THE TEST CASES
195 D TESTALL^C0CUNIT("C0CCCR")
196 Q
197 ;
198ZTEST(WHICH) ; RUN ONE SET OF TESTS
199 N ZTMP
200 D ZLOAD^C0CUNIT("ZTMP","C0CCCR")
201 D ZTEST^C0CUNIT(.ZTMP,WHICH)
202 Q
203 ;
204TLIST ; LIST THE TESTS
205 N ZTMP
206 D ZLOAD^C0CUNIT("ZTMP","C0CCCR")
207 D TLIST^C0CUNIT(.ZTMP)
208 Q
209 ;
210 ;;><TEST>
211 ;;><PROBLEMS>
212 ;;>>>K C0C S C0C=""
213 ;;>>>D CCRRPC^C0CCCR(.C0C,"2","PROBLEMS","")
214 ;;>>?@C0C@(@C0C@(0))["</Problems>"
215 ;;><VITALS>
216 ;;>>>K C0C S C0C=""
217 ;;>>>D CCRRPC^C0CCCR(.C0C,"2","VITALS","")
218 ;;>>?@C0C@(@C0C@(0))["</VitalSigns>"
219 ;;><CCR>
220 ;;>>>K C0C S C0C=""
221 ;;>>>D CCRRPC^C0CCCR(.C0C,"2","CCR","")
222 ;;>>?@C0C@(@C0C@(0))["</ContinuityOfCareRecord>"
223 ;;><ACTLST>
224 ;;>>>K C0C S C0C=""
225 ;;>>>D CCRRPC^C0CCCR(.C0C,"2","CCR","")
226 ;;>>>D ACTLST^C0CCCR(C0C,"ACTTEST")
227 ;;><ACTORS>
228 ;;>>>D ZTEST^C0CCCR("ACTLST")
229 ;;>>>D QUERY^C0CXPATH(TGLOBAL,"//ContinuityOfCareRecord/Actors","G2")
230 ;;>>>D EXTRACT^C0CACTOR("G2","ACTTEST","G3")
231 ;;>>?G3(G3(0))["</Actors>"
232 ;;><TRIM>
233 ;;>>>D ZTEST^C0CCCR("CCR")
234 ;;>>>W $$TRIM^C0CXPATH(CCRGLO)
235 ;;><ALERTS>
236 ;;>>>S TESTALERT=1
237 ;;>>>K C0C S C0C=""
238 ;;>>>D CCRRPC^C0CCCR(.C0C,"2","ALERTS","")
239 ;;>>?@C0C@(@C0C@(0))["</Alerts>"
240
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