source: ccr/trunk/p/C0CDIC.m@ 1006

Last change on this file since 1006 was 662, checked in by George Lilly, 15 years ago

some new RNF processing tools

File size: 8.2 KB
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1C0CDIC ; CCDCCR/GPL - CCR Dictionary utilities; 6/1/08
2 ;;0.1;CCDCCR;nopatch;noreleasedate
3 ;Copyright 2008 WorldVistA. Licensed under the terms of the GNU
4 ;General Public License See attached copy of the License.
5 ;
6 ;This program is free software; you can redistribute it and/or modify
7 ;it under the terms of the GNU General Public License as published by
8 ;the Free Software Foundation; either version 2 of the License, or
9 ;(at your option) any later version.
10 ;
11 ;This program is distributed in the hope that it will be useful,
12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 ;GNU General Public License for more details.
15 ;
16 ;You should have received a copy of the GNU General Public License along
17 ;with this program; if not, write to the Free Software Foundation, Inc.,
18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
19 ;
20 W "This is the CCR Dictionary Utility Library ",!
21 W !
22 Q
23 ;
24DIC2CSV ;OUTPUT THE CCR DICTIONARY TO A CSV FILE
25 ;
26 N ZI
27 S ZI=""
28 S G1=$NA(^TMP($J,"C0CCSV",1))
29 S G1A=$NA(@G1@("V"))
30 S G2=$NA(^TMP($J,"C0CCSV",2))
31 D GETN2^C0CRNF(G1,170) ; GET THE MATRIX
32 F S ZI=$O(@G1A@(ZI)) Q:ZI="" D ;FOR EACH ROW IN THE MATRIX
33 . I $G(@G1A@(ZI,"MAPPING METHOD",1))'="" D ;
34 . . W @G1A@(ZI,"MAPPING METHOD",1),!
35 . . ;K @G1A@(ZI,"MAPPING METHOD")
36 . ;W !,ZI,$G(@G1A@(ZI,"MAPPING METHOD",1))
37 D RNF2CSV^C0CRNF(G2,G1,"VN") ; PREPARE THE CVS FILE
38 K @G1
39 D FILEOUT^C0CRNF(G2,"FILE_"_170_".csv")
40 K @G2
41 Q
42 ;
43GVARS(C0CVARS,C0CT) ; Get the CCR variables from the CCR template
44 ; and return them in C0CVARS, which is passed by name
45 ; FIRST PIECE OF C0CVARS(x) IS THE VARIABLE NAME, SECOND PIECE
46 ; IS THE LINE NUMBER OF THE VARIABLE IN THE TEMPLATE
47 ; C0CT IS RETURNED AS THE CCR TEMPLATE
48 N C0CTVARS ; ARRAY FOR THE TEMPLATE AND ARRAY FOR THE VARS
49 D LOAD^GPLCCR0(C0CT) ; LOAD THE CCR TEMPLATE
50 D XVARS^GPLXPATH("C0CTVARS",C0CT) ; PULL OUT THE VARS
51 N C0CI,C0CX
52 S @C0CVARS@(0)=C0CTVARS(0) ; SAME COUNT
53 F C0CI=1:1:C0CTVARS(0) D ; FOR EVERY LINE IN THE ARRAY
54 . S C0CX=C0CTVARS(C0CI) ; THE VARIABLE - 3 PIECES, FIRST ONE NULL
55 . S @C0CVARS@(C0CI)=$P(C0CX,"^",2)_"^"_$P(C0CX,"^",3) ; VAR NAME^LINE NUMBER
56 ;D PARY^GPLXPATH("C0CVARS")
57 Q
58 ;
59GXPATH(C0CPVARS,C0CPT) ; LOAD THE CCR TEMPLATE INTO C0CPT, PULL OUT VARIABLES
60 ; AND THE XPATH TO THE VARIABLES INTO C0CPVARS
61 ; BY INDEXING THE TEMPLATE C0CT AND MATCHING THE XPATH TO THE VARIABLE
62 ; BOTH ARE PASSED BY NAME
63 ; C0CPVARS(x) IS VAR^LINENUM^XPATH SORTED BY LINENUM
64 ; C0CPVARS(0) IS NUMBER OF VARIABLES
65 ; C0CPT(0) IS NUMBER OF LINES IN THE TEMPLATE
66 D GVARS(C0CPVARS,C0CPT) ; GET THE VARIABLES AND LINE NUMBERS
67 ;N C0CTVARS ; HASH TABLE FOR VARIABLE BY LINE NUMBER
68 D HASHV ; PUT THE VARIABLES IN A LINE NUMBER HASH FOR MATCHING TO XPATHS
69 ; NOW GO GET THE XPATH INDEXES
70 D INDEX^GPLXPATH(C0CPT) ; ADD THE XPATH INDEXES TO THE TEMPLATE ARRAY
71 S C0CI="" ; GOING TO LOOP THROUGH THE WHOLE ARRAY LOOKING AT XPATHS
72 F S C0CI=$O(@C0CPT@(C0CI)) Q:C0CI="" D ; VISIT EVERY LINE
73 . I +C0CI'=0 Q ; SKIP EVERYTHING BUT THE XPATH INDEX
74 . I C0CI=0 Q ; SKIP THE ZERO NODE
75 . S C0CX=@C0CPT@(C0CI) ; PULL OUT THE LINE NUMBERS X^Y
76 . S C0CY=$P(C0CX,"^",1) ; STARTING LINE NUMBER
77 . S C0CZ=$P(C0CX,"^",2) ; ENDING LINE NUMBER
78 . I C0CY=C0CZ D ; THIS IS AN XPATH END NODE, HAS A VARIABLE (WE HOPE)
79 . . ; W "FOUND ",C0CI,!
80 . . I $D(C0CTVARS(C0CY)) D ; IF THERE IS A VARIABLE THERE
81 . . . S $P(C0CTVARS(C0CY),"^",3)=C0CI ; INSERT THE XPATH FOR THE VAR
82 D SORTV ; SORT THE ARRAY BY LINE NUMBER
83 Q
84 ;
85HASHV ; INTERNAL ROUTINE TO PUT VARIABLE NAMES IN A LINE NUMBER HASH
86 ;N C0CI,C0CTVARS,C0CX,C0CY
87 F C0CI=1:1:@C0CPVARS@(0) D ; FOR THE ENTIRE ARRAY
88 . S C0CX=$P(@C0CPVARS@(C0CI),"^",2) ; LINE NUMBER
89 . S C0CY=$P(@C0CPVARS@(C0CI),"^",1) ; VARIABLE NAME
90 . S C0CTVARS(C0CX)=C0CY ; BUILD HASH OF VARIABLES BY LINE NUMBER
91 Q
92 ;
93SORTV ; INTERNAL ROUTINE TO OUTPUT VARIABLES (AND XPATHS) IN LINE NUMBER ORDER
94 ;N C0CV2 ; SCRACTH SPACE FOR BUILDING SORTED ARRAY
95 S C0CI="" ;
96 F S C0CI=$O(C0CTVARS(C0CI)) Q:C0CI="" D ; BY LINE NUMBER
97 . S C0CX=C0CTVARS(C0CI) ;VARIABLE NAME
98 . S $P(C0CX,"^",2)=C0CI ; LINE NUMBER IS SECOND PIECE
99 . D PUSH^GPLXPATH("C0C2",C0CX) ; PUT ONTO ARRAY
100 K @C0CPVARS
101 M @C0CPVARS=C0C2
102 Q
103 ;
104LOAD ; LOAD VARIABLE NAMES AND XPATH IN ^C0CDIC(170
105 ; INITIAL LOAD OF THE CCR DICTIONARY
106 ;
107 N C0CDIC,C0CARY,C0CXML,C0CFDA,C0CI
108 S C0CDIC="^C0CDIC(170," ; ROOT OF THE CCR DICTIONARY
109 D GXPATH("C0CARY","C0CXML") ; FETCH THE VARIABLES AND XPATH INTO C0CARY
110 ; C0CXML WILL CONTAIN THE TEMPLATE - NOT NEEDED FOR LOAD
111 D PARY^GPLXPATH("C0CARY") ;TEST
112 F C0CI=1:1:C0CARY(0) D ; LOAD EACH VARIABLE
113 . S C0CFDA(170,"+"_C0CI_",",.01)=$P(C0CARY(C0CI),"^",1) ; VAR NAME
114 . S C0CFDA(170,"+"_C0CI_",",2)=$P(C0CARY(C0CI),"^",3) ; XPATH
115 . D UPDATE^DIE("","C0CFDA")
116 . I $D(^TMP("DIERR",$J)) U $P BREAK
117 . W "LOADING:",C0CI," ",C0CARY(C0CI),!
118 Q
119 ;
120INIT ; INITIALIZE CCR DICTIONARY BASED ON VARIABLE NAMES
121 ;
122 ; CHEAT SHEET FOR VARIABLE NAMES IN ^C0CDIC(170.xx,
123 ; THIS IS WHAT WILL BE IN C0CA FOR EACH DICTIONARY ENTRY
124 ;G1("CODING")="170^8"
125 ;G1("DATA ELEMENT")="170^7"
126 ;G1("DESCRIPTION")="170^3"
127 ;G1("ID")="170^1"
128 ;G1("M","170^8","CODING")="170.08^.01"
129 ;G1("MAPPING METHOD")="170.08^1"
130 ;G1("SECTION")="170^10"
131 ;G1("SOURCE")="170^4"
132 ;G1("STATUS")="170^9"
133 ;G1("TYPE")="170^6"
134 ;G1("VARIABLE")="170^.01"
135 ;G1("XPATH")="170^2"
136 ;
137 N C0CZA,C0CZX,C0CN,C0CSTAT
138 S C0CZX=0
139 S C0CSTAT=0 ; INIT STATUS SET FLAG
140 F S C0CZX=$O(^C0CDIC(170,C0CZX)) Q:+C0CZX=0 D ; FOR EACH DICT ENTRY
141 . ;W C0CZX,!
142 . K C0CA,C0CN ; CLEAR OUT THE LAST ONE
143 . D GETN1^C0CRNF("C0CA",170,C0CZX,"","ALL") ; GET VARIABLE HASH
144 . ;ZWR C0CA B ;
145 . S C0CN=$$ZVALUE("VARIABLE") ;NAME OF THE VARIABLE
146 . W "VARIABLE: ",C0CN,!
147 . I $E(C0CN,1,5)="ACTOR" D SETFDA("SECTION","ACTORS") ;
148 . I $E(C0CN,1,6)="SOCIAL" D ;
149 . . D SETFDA("SECTION","SOC") ;
150 . . D SETFDA("STATUS","X") ;SOCIAL HISTORY NOT IMPLEMENTED
151 . . S C0CSTAT=1
152 . I $E(C0CN,1,6)="FAMILY" D ;
153 . . D SETFDA("SECTION","FAM") ;
154 . . D SETFDA("STATUS","X") ;FAMILY HISTORY NOT IMPLEMENTED
155 . . S C0CSTAT=1
156 . ;D SETFDA("TYPE","") ;CORRECT FOR TYPE ERRORS
157 . I $E(C0CN,1,5)="ALERT" D SETFDA("SECTION","ALERTS")
158 . I $E(C0CN,1,5)="VITAL" D SETFDA("SECTION","VITALS")
159 . I $E(C0CN,1,7)="PROBLEM" D SETFDA("SECTION","PROBLEMS")
160 . I $E(C0CN,1,10)="RESULTTEST" D SETFDA("SECTION","TEST")
161 . E I $E(C0CN,1,6)="RESULT" D SETFDA("SECTION","LABS")
162 . I C0CN["CODEVALUE" D SETFDA("TYPE","CD") ;CODES
163 . I C0CN["CODEVERSION" D SETFDA("TYPE","CV") ; CODE VERSION
164 . I C0CN["CODINGSYSTEM" D SETFDA("TYPE","CS") ;CODING SYSTEM
165 . I $$ZVALUE("STATUS")=""!'C0CSTAT D SETFDA("STATUS","N") ;BLANK STATUS TO N
166 . I $$ZVALUE("XPATH")["/Medication/Directions/" D ; MEDS DIRECTIONS VAR
167 . . D SETFDA("SECTION","DIR") ; SPECIAL SECTION FOR DIRECTIONS
168 . E I $$ZVALUE("XPATH")["/Medications/Medication/" D ; ALL OTHER MEDS
169 . . D SETFDA("SECTION","MEDS") ; A MEDS VAR
170 . I $E(C0CN,($L(C0CN)-1),$L(C0CN))="ID" D SETFDA("TYPE","ID") ;CATCH THE IDS
171 . I C0CN["DATETIME" D SETFDA("TYPE","DT") ; DATE/TIME VARIABLE
172 . W "VARIABLE: ",C0CZX," ",C0CA("VARIABLE"),!
173 . ;ZWR C0CFDA
174 . I $D(C0CFDA) D ; WE HAVE CHANGES ON THIS VARIABLE
175 . . ;ZWR C0CFDA
176 . . D UPDATE^DIE("","C0CFDA(C0CZX)")
177 . . I $D(^TMP("DIERR",$J)) U $P BREAK
178 . . D CLEAN^DILF ; CLEAN UP
179 . ;ZWR C0CFDA
180 Q
181 ;
182SETFDA(C0CSN,C0CSV) ; INTERNAL ROUTINE TO MAKE AN FDA ENTRY FOR FIELD C0CSN
183 ; TO SET TO VALUE C0CSV.
184 ; C0CFDA,C0CA,C0CZX ARE ASSUMED FROM THE CALLING ROUTINE
185 ; C0CSN,C0CSV ARE PASSED BY VALUE
186 ;
187 N C0CSI,C0CSJ
188 S C0CSI=$$ZFILE(C0CSN,"C0CA") ; FILE NUMBER
189 S C0CSJ=$$ZFIELD(C0CSN,"C0CA") ; FIELD NUMBER
190 S C0CFDA(C0CZX,C0CSI,C0CZX_",",C0CSJ)=C0CSV
191 Q
192ZFILE(ZFN,ZTAB) ; EXTRINSIC TO RETURN FILE NUMBER FOR FIELD NAME PASSED
193 ; BY VALUE IN ZFN. FILE NUMBER IS PIECE 1 OF C0CA(ZFN)
194 ; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
195 I '$D(ZTAB) S ZTAB="C0CA"
196 Q $P(@ZTAB@(ZFN),"^",1)
197ZFIELD(ZFN,ZTAB) ;EXTRINSIC TO RETURN FIELD NUMBER FOR FIELD NAME PASSED
198 ; BY VALUE IN ZFN. FILE NUMBER IS PIECE 2 OF C0CA(ZFN)
199 ; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
200 I '$D(ZTAB) S ZTAB="C0CA"
201 Q $P(@ZTAB@(ZFN),"^",2)
202ZVALUE(ZFN,ZTAB) ;EXTRINSIC TO RETURN VALUE FOR FIELD NAME PASSED
203 ; BY VALUE IN ZFN. FILE NUMBER IS PIECE 3 OF C0CA(ZFN)
204 ; IF ZTAB IS NULL, IT DEFAULTS TO C0CA
205 I '$D(ZTAB) S ZTAB="C0CA"
206 Q $P(@ZTAB@(ZFN),"^",3)
207 ;
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