source: ccr/trunk/p/C0CIN.m@ 727

Last change on this file since 727 was 646, checked in by George Lilly, 15 years ago

improved xpath handling

File size: 6.3 KB
Line 
1C0CIN ; CCDCCR/GPL - CCR IMPORT utilities; 9/20/08
2 ;;1.0;C0C;;Sep 20, 2009;
3 ;Copyright 2009 George Lilly. Licensed under the terms of the GNU
4 ;General Public License See attached copy of the License.
5 ;
6 ;This program is free software; you can redistribute it and/or modify
7 ;it under the terms of the GNU General Public License as published by
8 ;the Free Software Foundation; either version 2 of the License, or
9 ;(at your option) any later version.
10 ;
11 ;This program is distributed in the hope that it will be useful,
12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 ;GNU General Public License for more details.
15 ;
16 ;You should have received a copy of the GNU General Public License along
17 ;with this program; if not, write to the Free Software Foundation, Inc.,
18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
19 ;
20 W "This is the CCR Import Utility Library ",!
21 Q
22 ;
23TEST ; TESTS BOTH ROUTINES AT ONCE
24 N ZI,ZJ
25 S ZI="/home/vademo2/CCR" ;directory purposely leaving off the trailing /
26 S ZJ="PAT_358_CCR_V1_0_21.xml" ; random test patient
27 D RPCFIN(.GPL,358,"GPLTEST","CCR",ZJ,ZI)
28 Q
29 ;
30RPCAIN(RTN,DFN,SOURCE,TYPE,ARY) ; ARRAY IN RPC - ACCEPT AN XML DOCUMENT
31 ; AND STORE IT IN THE INCOMING XML FILE
32 ; RETURNS THE IEN OF THE RECORD OR TEXT IF THERE IS AN ERROR
33 I $G(DFN)="" S RTN="DFN NOT DEFINED" Q ;
34 N C0CXF S C0CXF=175 ; FILE NUMBER FOR INCOMING XML FILE
35 N C0CFDA,ZX
36 S C0CFDA(C0CXF,"+1,",.01)=DFN ; PATIENT
37 S C0CFDA(C0CXF,"+1,",1)=$$NOW^XLFDT ;DATE
38 S C0CFDA(C0CXF,"+1,",2)=TYPE ;TYPE
39 S C0CFDA(C0CXF,"+1,",3)=$$ADDSRC(SOURCE) ;SOURCE
40 S C0CFDA(C0CXF,"+1,",7)="NEW" ; STATUS OF NEW FOR NOT PROCESSED
41 D UPDIE ; CREATE THE RECORD
42 S ZX=C0CIEN(1) ; CAPTURE THE RECORD NUMBER
43 D WP^DIE(C0CXF,ZX_",",4,,ARY,"ZERR")
44 ;W "RECORD:",ZX,!
45 S RTN=ZX ; RETURN IEN OF THE XML FILE
46 Q
47 ;
48ADDSRC(ZSRC) ;EXTRISIC TO ADD A SOURCE TO THE CCR SOURCE FILE
49 ; RETURNS RECORD NUMBER. IF SOURCE EXISTS, JUST RETURNS IT'S RECORD NUMBER
50 ;
51 N ZX,ZF,C0CFDA
52 S ZF=171.401 ; FILE NUMBER FOR CCR SOURCE FILE
53 S C0CFDA(ZF,"?+1,",.01)=ZSRC
54 D UPDIE
55 Q $O(^C0C(171.401,"B",ZSRC,""))
56 ;
57RPCFIN(RTN,DFN,SOURCE,TYPE,FN,FP) ; FILE IN RPC - READ AN XML DOCUMENT
58 ; FROM A HOST FILE AND STORE IT IN THE INCOMING XML FILE
59 N ZX,ZTMP
60 I $E($RE(FP))'="/" S ZX=FP_"/"
61 E S ZX=FP
62 S ZX=ZX_FN
63 D LOAD("ZTMP",ZX)
64 I '$D(ZTMP) D Q ; NO LUCK
65 . W "FILE NOT LOADED",!
66 D RPCAIN(.RTN,DFN,SOURCE,TYPE,"ZTMP")
67 N C0CFDA
68 S C0CFDA(175,RTN_",",5)=FN ; FILE NAME
69 S C0CFDA(175,RTN_",",6)=FP ; FILE PATH
70 D UPDIE ; UPDATE WITH FILE NAME AND PATH
71 Q
72 ;
73RPCLIST(RTN,DFN) ; CCR LIST - LIST XML DOCUMENTS FOR PATIENT DFN
74 ; THAT ARE STORED IN THE INCOMING XML FILE
75 ; RETURNS AN ARRAY OF THE FORM
76 ; RTN(x)="IEN^DATE^TYPE^SOURCE^STATUS" WHERE
77 ; IEN IS THE RECORD NUMBER OF THE XML DOCUMENT
78 ; DATE IS THE DATE THE DOCUMENT WAS STORED IN THE FILE
79 ; TYPE IS "CCD" OR "CCR" OR "OTHER"
80 ; SOURCE IS THE NAME OF THE DOCUMENT SOURCE FROM THE CCR SOURCE FILE
81 ; STATUS IS THE STATUS OF THE DOCUMENT (VALUES TO BE DEFINED)
82 N ZF S ZF=175 ; FILE NUMBER OF INCOMING XML FILE
83 N ZI S ZI=""
84 N ZN S ZN=0
85 F S ZI=$O(^C0CIN("B",DFN,ZI),-1) Q:ZI="" D ; FOR EACH RECORD FOR THIS PATIENT
86 . S ZN=ZN+1 ;INCREMENT COUNT OF RETURN ARRAY
87 . S $P(RTN(ZN),"^",1)=ZI ; IEN OF RECORD
88 . S $P(RTN(ZN),"^",2)=$$GET1^DIQ(ZF,ZI_",",1,"E") ;DATE
89 . S $P(RTN(ZN),"^",3)=$$GET1^DIQ(ZF,ZI_",",2,"E") ;TYPE
90 . S $P(RTN(ZN),"^",4)=$$GET1^DIQ(ZF,ZI_",",3,"E") ;SOURCE
91 . S $P(RTN(ZN),"^",5)=$$GET1^DIQ(ZF,ZI_",",7,"I") ; STATUS
92 Q
93 ;
94RPCDOC(RTN,IEN) ; RETRIEVE DOCUMENT NUMBER IEN FROM THE INCOMING XML FILE
95 ; RETURNED IN ARRAY RTN
96 N ZI
97 S ZI=$$GET1^DIQ(175,IEN_",",4,,"RTN")
98 Q
99 ;
100EN(INXML,SOURCE,C0CDFN) ; IMPORT A CCR, PASSED BY NAME INXML
101 ; FILE UNDER SOURCE, WHICH IS A POINTER TO THE CCR SOURCE FILE
102 ; FOR PATIENT C0CDFN
103 ;N C0CXP
104 S C0CINB=$NA(^TMP("C0CIN",$J,"VARS",C0CDFN))
105 S C0CDOCID=$$PARSE^C0CMXML(INXML) ;W !,"DocID: ",C0CDOCID
106 ;S REDUX="//ContinuityOfCareRecord/Body"
107 S REDUX=""
108 D XPATH^C0CMXML(1,"/","C0CIDX","C0CXP",,REDUX)
109 ;D INDEX^C0CXPATH(INXML,"C0CXP",-1) ; GENERATE XPATHS FROM THE CCR
110 ;N ZI,ZJ,ZK
111 S ZI=""
112 F S ZI=$O(C0CXP(ZI)) Q:ZI="" D ; FOR EACH XPATH
113 . D DEMUX^C0CMXP("ZJ",ZI) ;
114 . W ZJ,!
115 . S ZK=$P(ZJ,"^",3) ; PULL OUT THE XPATH
116 . S ZM=$P(ZJ,"^",1) ; PULL OUT THE MULTIPLE
117 . S ZS=$P(ZJ,"^",2) ; PULL OUT THE SUBMULTIPLE
118 . S C0CDICN=$O(^C0CDIC(170,"XPATH",ZK,""))
119 . I C0CDICN="" D Q ;
120 . . W "MISSING XPATH:",!,ZK,! ; OOPS, XPATH NOT IN C0CDIC
121 . . S MISSING(ZK)=""
122 . ;D GETS^DIQ(170,C0CDICN_",","*",,"C0CFDA")
123 . S C0CVAR=$$GET1^DIQ(170,C0CDICN_",",.01) ; VARIABLE NAME
124 . S C0CSEC=$$GET1^DIQ(170,C0CDICN_",",12) ;ELEMENT TYPE
125 . W C0CSEC,":",C0CVAR,!
126 Q
127 ;
128GETACCR(AOUT,C0CDFN) ; EXTRACT A CCR FOR PATIENT ADFN AND PUT IT IN ARRAY AOUT
129 ;PASSED BY NAME
130 N ZT
131 D CCRRPC^C0CCCR(.ZT,C0CDFN,"LABLIMIT:T-1000")
132 M @AOUT=ZT
133 Q
134 ;
135TEST64 ;TEST BASE64 DECODING FOR IMPORTING CCR FROM THE NHIN
136 W $$FTG^%ZISH("/tmp/","base64_encoded_ccr.txt","G64(1)",1)
137 S G=G64(1)
138 S ZI=""
139 F S ZI=$O(G64(1,"OVF",ZI)) Q:ZI="" D ; FOR EVERY OVERFLOW RECORD
140 . S G=G_G64(1,"OVF",ZI) ;HOPE IT'S NOT TOO BIG
141 S G2=$$DECODE^RGUTUU(G)
142 Q
143 ;
144NORMAL(OUTXML,INXML) ;NORMALIZES AN XML STRING PASSED BY NAME IN INXML
145 ; INTO AN XML ARRAY RETURNED IN OUTXML, ALSO PASSED BY NAME
146 ;
147 N ZI,ZN,ZTMP
148 S ZN=1
149 S @OUTXML@(ZN)=$P(@INXML,"><",ZN)_">"
150 S ZN=ZN+1
151 F S @OUTXML@(ZN)="<"_$P(@INXML,"><",ZN) Q:$P(@INXML,"><",ZN+1)="" D ;
152 . S @OUTXML@(ZN)=@OUTXML@(ZN)_">"
153 . S ZN=ZN+1
154 Q
155 ;
156CLEANCR(OUTXML,INXML) ; USE $C(10) TO SEPARATE THE STRING INXML INTO
157 ;AN ARRAY OUTXML(n) OUTXML AND INXML PASSED BY NAME
158 N ZX,ZY,ZN
159 S ZX=1,ZN=1
160 F S ZY=$F(@INXML,$C(10),ZX) Q:ZY=0 D ;
161 . S @OUTXML@(ZN)=$E(G2,ZX,ZY-2)
162 . I @OUTXML@(ZN)'="" S ZN=ZN+1
163 . S ZX=ZY
164 Q
165 ;
166LOAD(ZRTN,filepath) ; load an xml file into the ZRTN array, passed by name
167 n i
168 D ;
169 . n zfile,zpath,ztmp,zok s (zfile,zpath,ztmp)=""
170 . s ztmp=$na(^TMP("C0CLOAD",$J))
171 . k @ztmp
172 . s zfile=$re($p($re(filepath),"/",1)) ;file name
173 . s zpath=$p(filepath,zfile,1) ; file path
174 . s zok=$$FTG^%ZISH(zpath,zfile,$NA(@ztmp@(1)),3) ; import the file incr sub 3
175 . m @ZRTN=@ztmp
176 . k @ztmp
177 . s i=$o(@ZRTN@(""),-1) ; highest line number
178 q
179 ;
180UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
181 K ZERR,C0CIEN
182 D CLEAN^DILF
183 D UPDATE^DIE("","C0CFDA","C0CIEN","ZERR")
184 I $D(ZERR) D ;
185 . W "ERROR",!
186 . ZWR ZERR
187 . B
188 K C0CFDA
189 Q
190 ;
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