source: ccr/trunk/p/C0CMCCD.m@ 1448

C0CMCCD   ; GPL - MXML based CCD utilities;12/04/09  17:05
 ;;0.1;C0C;nopatch;noreleasedate
 ;Copyright 2009 George Lilly.  Licensed under the terms of the GNU
 ;General Public License See attached copy of the License.
 ;
 ;This program is free software; you can redistribute it and/or modify
 ;it under the terms of the GNU General Public License as published by
 ;the Free Software Foundation; either version 2 of the License, or
 ;(at your option) any later version.
 ;
 ;This program is distributed in the hope that it will be useful,
 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 ;GNU General Public License for more details.
 ;
 ;You should have received a copy of the GNU General Public License along
 ;with this program; if not, write to the Free Software Foundation, Inc.,
 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
 ;
 Q
 ;
PARSCCD(DOC,OPTION) ; THIS WAS COPIED FROM EN^MXMLDOM TO CUSTIMIZE FOR 
 ; PROCESSING CCDS 
 N CBK,SUCCESS,LEVEL,NODE,HANDLE
 K ^TMP("MXMLERR",$J)
 L +^TMP("MXMLDOM",$J):5
 E  Q 0
 S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
 L -^TMP("MXMLDOM",$J)
 S CBK("STARTELEMENT")="STARTELE^C0CMCCD" ; ONLY THIS ONE IS CHANGED ;GPL
 S CBK("ENDELEMENT")="ENDELE^MXMLDOM"
 S CBK("COMMENT")="COMMENT^MXMLDOM"
 S CBK("CHARACTERS")="CHAR^MXMLDOM"
 S CBK("ENDDOCUMENT")="ENDDOC^MXMLDOM"
 S CBK("ERROR")="ERROR^MXMLDOM"
 S (SUCCESS,LEVEL,LEVEL(0),NODE)=0,OPTION=$G(OPTION,"V1")
 D EN^MXMLPRSE(DOC,.CBK,OPTION)
 D:'SUCCESS DELETE^MXMLDOM(HANDLE)
 Q $S(SUCCESS:HANDLE,1:0)
 ; Start element
 ; Create new child node and push info on stack
STARTELE(ELE,ATTR) ; COPIED FROM STARTELE^MXMLDOM AND MODIFIED TO TREAT
 ; ATTRIBUTES AS SUBELEMENTS TO MAKE CCD XPATH PROCESSING EASIER
 N PARENT
 S PARENT=LEVEL(LEVEL),NODE=NODE+1
 S:PARENT ^TMP("MXMLDOM",$J,HANDLE,PARENT,"C",NODE)=ELE
 S LEVEL=LEVEL+1,LEVEL(LEVEL)=NODE,LEVEL(LEVEL,0)=ELE
 S ^TMP("MXMLDOM",$J,HANDLE,NODE)=ELE,^(NODE,"P")=PARENT
 ;M ^("A")=ATTR
 N ZI S ZI="" ; INDEX FOR ATTR
 F  S ZI=$O(ATTR(ZI)) Q:ZI=""  D  ; FOR EACH ATTRIBUTE
 . N ELE,TXT ; ABOUT TO RECURSE
 . S ELE=ZI ; TAG
 . S TXT=ATTR(ZI) ; DATA
 . D STARTELE(ELE,"") ; CREATE A NEW SUBNODE
 . D TXT^MXMLDOM("T") ; INSERT DATA TO TAG
 . D ENDELE^MXMLDOM(ELE) ; POP BACK UP A LEVEL
 Q
 ;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
 N ZN
 ;I $$TAG(ZOID)["entry" B
 S ZN=$$NXTSIB(ZOID)
 I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
 Q 0
 ;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
 Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
 ;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
 Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
 ;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
 S HANDLE=C0CDOCID
 K @RTN
 D GETTXT^MXMLDOM("A")
 Q
 ;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
 ;I ZOID=149 B ;GPLTEST
 N X,Y
 S Y=""
 S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
 I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
 I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
 Q Y
 ;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
 Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
 ;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
 ;N ZT,ZN S ZT=""
 ;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
 ;Q $G(@C0CDOM@(ZOID,"T",1))
 S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
 Q
 ;
CLEANARY(OUTARY,INARY) ; GOES THROUGH AN ARRAY AND CALLS CLEAN ON EACH NODE
 ; INARY AND OUTARY PASSED BY NAME
 N ZI S ZI=""
 F  S ZI=$O(@INARY@(ZI)) Q:ZI=""  D  ; FOR EACH NODE
 . S @OUTARY@(ZI)=$$CLEAN(@INARY@(ZI)) ; CLEAN THE NODE
 Q
 ;
CLEAN(STR) ; extrinsic function; returns string
 ;; Removes all non printable characters from a string.
 ;; STR by Value
 N TR,I
 F I=0:1:31 S TR=$G(TR)_$C(I)
 S TR=TR_$C(127)
 QUIT $TR(STR,TR)
 ;
STRIPTXT(OUTARY,ZARY) ; STRIPS THE "TEXT" PORTION OUT OF AN XML FILE
 ; THIS IS USED TO DELETE THE NARATIVE HTML OUT OF THE CCD XML FILES BECAUSE
 ; THEY DO NOT WORK RIGHT WITH THE PARSER
 ;N ZWRK,ZBLD,ZI ; WORK ARRAY,BUILD ARRAY, AND COUNTER
 S ZI=$O(@ZARY@("")) ; GET FIRST LINE NUMBER
 D C0CBEGIN("ZWRK",ZI) ; INSERT FIRST LINE IN WORK ARRAY
 F  S ZI=$O(@ZARY@(ZI)) Q:ZI=""  D  ; FOR EACH LINE OF THE ARRAY
 . I $O(@ZARY@(ZI))="" D  Q  ; AT THE END 
 . . D C0CEND("ZWRK",ZI) ; INCLUDE LAST LINE IN WORK ARRAY
 . I ZI=1 D C0CBEGIN("ZWRK",ZI) ; START WITH FIRST LINE
 . I @ZARY@(ZI)["<text" D C0CEND("ZWRK",ZI-1) ;PREV LINE IS AN END
 . I @ZARY@(ZI)["</text>" D C0CBEGIN("ZWRK",ZI+1) ;NEXT LINE IS A BEGIN
 S ZI=""
 F  S ZI=$O(ZWRK(ZI)) Q:ZI=""  D  ; MAKE A BUILD LIST FROM THE WORK ARRAY
 . D QUEUE^C0CXPATH("ZBLD",ZARY,$P(ZWRK(ZI),"^",1),$P(ZWRK(ZI),"^",2))
 D BUILD^C0CXPATH("ZBLD",OUTARY) ; BUILD NEW ARRAY WITHOUT TEXT SECTIONS
 K @OUTARY@(0) ; GET RID OF THE LINE COUNT
 Q
 ;
C0CBEGIN(ZA,LN) ; INSERTS A BEGIN LINE LN INTO ARRAY ZWRK, PASSED BY NAME
 N ZI
 S ZI=$O(@ZA@(""),-1)
 I ZI="" S ZI=1
 E  S ZI=ZI+1 ; INCREMENT COUNT IN WORK ARRAY
 S $P(@ZA@(ZI),"^",1)=LN
 Q
 ;
C0CEND(ZB,LN) ; INSERTS AN END LINE LN INTO ARRAY ZWRK, PASSED BY NAME
 N ZI
 S ZI=$O(@ZB@(""),-1)
 I ZI="" S ZI=1
 S $P(@ZB@(ZI),"^",2)=LN
 Q
 ;
SEPARATE(OUTARY,INARY) ; SEPARATES XPATH VARIABLES ACCORDING TO THEIR
 ; ROOT ; /Problems/etc/etc goes to @OUTARY@("Problems","/Problems/etc/etc")
 S ZI=""
 F  S ZI=$O(@INARY@(ZI)) Q:ZI=""  D  ; FOR EACH ELEMENT OF THE ARRAY
 . I $P(ZI,"//",2)'="" D  ; FOR NON-BODY ENTRIES
 . . S ZJ=$P(ZI,"/",4) ; things like From Patient Actor
 . E  D  ; FOR BODY PARTS
 . . S ZJ=$P(ZI,"/",2) ;
 . . I ZJ="" S ZJ=$P(ZI,"/",3) ;
 . S @OUTARY@(ZJ,ZI)=$G(@INARY@(ZI)) ;FIX THIS FOR MULTILINE COMMENTS
 Q
 ;
FINDTID ; FIND TEMPLATE IDS IN DOM 1
 S C0CDOCID=1
 S ZD=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
 S ZN=""
 S CURSEC=""
 S TID=""
 F  S ZN=$O(@ZD@(ZN)) Q:ZN=""  D  ;
 . I $$TAG(ZN)="root" D  ;
 . . I $$TAG($$PARENT(ZN))="templateId" D  ; ONLY LOOKING FOR TEMPLATES
 . . . S ZG=$$PARENT($$PARENT(ZN))
 . . . S ZG2=$$PARENT(ZG) ;COMPONENT THAT HOLDS THIS SECTION
 . . . S CMT=$G(@ZD@(ZG,"X",1))
 . . . I CMT="" S CMT="?"
 . . . I $$TAG(ZG)="section" D  ;START OF A SECTION
 . . . . S CURSEC=$$PARENT(ZG)
 . . . . S SECCMT=$G(@ZD@(CURSEC,"X",1))
 . . . . I SECCMT="" S SECCMT="?"
 . . . . S SECTID=$G(@ZD@(ZN,"T",1)) ;SECTION TEMPLATE ID
 . . . S TID=$G(@ZD@(ZN,"T",1)) ;TEMPLATE ID
 . . . I CURSEC'="" D  ; IF WE ARE IN A SECTION
 . . . . S CCDDIR(ZG2,CURSEC,$$TAG(ZG2),CMT,SECCMT)=TID
 . . . . S DOMMAP(ZG2)=CURSEC_U_$$TAG(ZG2)_U_TID_U_SECTID
 . . . W !,$$TAG(ZG2)," ",$G(@ZD@(ZG,"X",1))
 . . . W " root ",ZN," ",@ZD@(ZN,"T",1)
 Q
 ;
FINDALT ; PROCESS THE DOMMAP AND FIND THE ALT TAGS FOR COMPONENTS
 ;
 S ZI=""
 F  S ZI=$O(DOMMAP(ZI)) Q:ZI=""  D  ; FOR EACH NODE IN THE MAP
 . S ZJ=DOMMAP(ZI) ;
 . S PARNODE=$P(ZJ,U,1) ;PARENT NODE
 . S TAG=$P(ZJ,U,2) ;THIS TAG
 . S TID=$P(ZJ,U,3) ;THIS TEMPLATE ID
 . S PARTID=$P(ZJ,U,4) ;PARENT TEMPLATE ID
 . S ZIEN=$O(^C0CXDS(178.101,"TID",TID,"")) ;THIS NODE IEN
 . S PARIEN=$O(^C0CXDS(178.101,"TID",PARTID,"")) ;PARENT NODE IEN
 . I ZI=PARNODE D  ; IF THIS IS A SECTION NODE
 . . S ALTTAG=$$GET1^DIQ(178.101,PARIEN_",",.03) ;ALT TAG FIELD FOR PARENT
 . . S NAME=$$GET1^DIQ(178.101,ZIEN_",",.01) ;NAME OF THIS NODE'S TEMPLATE
 . . W ZI," ",TAG," ",ALTTAG," ",NAME,!
 . . S C0CTAGS(ZI)=ALTTAG
 . E  D  ; NOT A SECTION NODE
 . . N ZJ S ZJ=""
 . . S ZJ=$O(^C0CXDS(178.101,"D",PARIEN,ZIEN,"")) ;A WHEREUSED POINTER?
 . . I ZJ'="" D  ; THERE IS A NEW LABEL FOR THIS NODE
 . . . N ZK
 . . . S ZK=$$GET1^DIQ(178.111,ZJ_","_ZIEN_",",2)
 . . . I ZK'="" D  ;
 . . . . W "FOUND ",ZK,!
 . . . . S C0CTAGS(ZI)=ZK ; NEW TAG FOR INTERSECTION
 Q
 ;
ALTTAG(NODE) ; SET Y EQUAL TO THE ALT TAG FOUND IN C0CTAGS IF NODE IF FOUND
 ;
 S Y=$G(C0CTAGS(NODE))
 Q
 ;
SETCBK ; SET THE TAG CALLBACK FOR XPATH PROCESSSING OF THE CCD
 S C0CCBK("TAG")="D ALTTAG^C0CMCCD(ZOID)"
 Q
 ;
OUTCCD(GARYIN) ; OUTPUT THE PARSED CCD TO A TEXT FILE
 ;D TEST3^C0CMXML
 N ZT S ZT=$NA(^TMP("CCDOUT",$J))
 N ZI,ZJ
 S ZI=1 S ZJ=""
 K @ZT
 F  S ZJ=$O(GARYIN(ZJ)) Q:ZJ=""  D  ;
 . S @ZT@(ZI)=ZJ_"^"_GARYIN(ZJ)
 . S ZI=ZI+1
 S ONAME=$NA(@ZT@(1))
 W $$OUTPUT^C0CXPATH(ONAME,"CCDOUT.txt","/home/vademo2/CCR")
 K @ZT
 Q
 ;
GENXDS(ZD) ; GENERATE THE XDS PROTOTYPE RECORDS FROM A CCDDIR ARRAY
 ; ARRAY ELEMENTS LOOK LIKE:
 ; CCDDIR(1659,1634,"observation"," Result observaion template "," Vital signs section template ")="2.16.840.1.113883.10.20.1.31"
 ;or CCDDIR(cur node,section node,cur tag,cur name,sec name)=templateId
 S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
 S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
 S DONE=0
 F  Q:DONE  D  ;
 . W @ZI,!
 . S ZJ=$QS(ZI,5)
 . S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
 . S C0CFDA(ZF,"?+1,",.01)=ZJ
 . S C0CFDA(ZF,"?+1,",.02)=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
 . S C0CFDA(ZF,"?+1,",1)=@ZI
 . D UPDIE
 . S ZI=$Q(@ZI)
 . I ZI="" S DONE=1
 Q
 ;
WHRUSD(ZD) ; UPDATE THE C0C XDS FILE WITH WHERE USED DATA FROM
 ; CCDDIR PASS BY NAME
 ; ARRAY ELEMENTS LOOK LIKE:
 ; CCDDIR(1634," Vital signs section template ",1659,"observation"," Result observaion template ")="2.16.840.1.113883.10.20.1.31"
 ;or CCDDIR(section node,sec name, cur node,cur tag,cur name)=templateId
 S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
 S ZSF=178.111 ; WHERE USED SUBFILE OF C0C XDS PROTOTYPE FILE
 S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
 S DONE=0
 F  Q:DONE  D  ;
 . W @ZI
 . S ZIEN=$O(^C0CXDS(178.101,"TID",@ZI,"")) ; IEN FOR THIS NODE'S TEMPLATE
 . W " IEN:",ZIEN
 . S ZJ=$QS(ZI,2)
 . S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
 . S ZPIEN=$O(^C0CXDS(178.101,"B",ZJ,"")) ; PARENT IEN
 . W " PARENT IEN:",ZPIEN
 . S ZTAG=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
 . W " TAG:",ZTAG,!
 . I ZIEN'=ZPIEN D  ; ONLY FOR CHILD TEMPLATES
 . . S C0CFDA(ZSF,"?+1,"_ZIEN_",",.01)=ZPIEN ; NEW SUBFILE ENTRY WITH PAR PTR
 . . S C0CFDA(ZSF,"?+1,"_ZIEN_",",1)=ZTAG ; TAG FOR NEW ENTRY
 . . D UPDIE
 . ;S C0CFDA(ZF,"?+1,",1)=@ZI
 . ;D UPDIE
 . S ZI=$Q(@ZI)
 . I ZI="" S DONE=1
 Q
 ; 
UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
 K ZERR
 D CLEAN^DILF
 D UPDATE^DIE("","C0CFDA","","ZERR")
 I $D(ZERR) D  ;
 . W "ERROR",!
 . ZWR ZERR
 . B
 K C0CFDA
 Q
 ;