C0CMCCD ; GPL - MXML based CCD utilities;12/04/09 17:05
;;1.2;CCD/CCR GENERATION UTILITIES;;Oct 30, 2012;Build 50
;Copyright 2009 George Lilly.
;
; This program is free software: you can redistribute it and/or modify
; it under the terms of the GNU Affero General Public License as
; published by the Free Software Foundation, either version 3 of the
; License, or (at your option) any later version.
;
; This program is distributed in the hope that it will be useful,
; but WITHOUT ANY WARRANTY; without even the implied warranty of
; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
; GNU Affero General Public License for more details.
;
; You should have received a copy of the GNU Affero General Public License
; along with this program. If not, see .
;
Q
;
PARSCCD(DOC,OPTION) ; THIS WAS COPIED FROM EN^MXMLDOM TO CUSTIMIZE FOR
; PROCESSING CCDS
N CBK,SUCCESS,LEVEL,NODE,HANDLE
K ^TMP("MXMLERR",$J)
L +^TMP("MXMLDOM",$J):5
E Q 0
S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
L -^TMP("MXMLDOM",$J)
S CBK("STARTELEMENT")="STARTELE^C0CMCCD" ; ONLY THIS ONE IS CHANGED ;GPL
S CBK("ENDELEMENT")="ENDELE^MXMLDOM"
S CBK("COMMENT")="COMMENT^MXMLDOM"
S CBK("CHARACTERS")="CHAR^MXMLDOM"
S CBK("ENDDOCUMENT")="ENDDOC^MXMLDOM"
S CBK("ERROR")="ERROR^MXMLDOM"
S (SUCCESS,LEVEL,LEVEL(0),NODE)=0,OPTION=$G(OPTION,"V1")
D EN^MXMLPRSE(DOC,.CBK,OPTION)
D:'SUCCESS DELETE^MXMLDOM(HANDLE)
Q $S(SUCCESS:HANDLE,1:0)
; Start element
; Create new child node and push info on stack
STARTELE(ELE,ATTR) ; COPIED FROM STARTELE^MXMLDOM AND MODIFIED TO TREAT
; ATTRIBUTES AS SUBELEMENTS TO MAKE CCD XPATH PROCESSING EASIER
N PARENT
S PARENT=LEVEL(LEVEL),NODE=NODE+1
S:PARENT ^TMP("MXMLDOM",$J,HANDLE,PARENT,"C",NODE)=ELE
S LEVEL=LEVEL+1,LEVEL(LEVEL)=NODE,LEVEL(LEVEL,0)=ELE
S ^TMP("MXMLDOM",$J,HANDLE,NODE)=ELE,^(NODE,"P")=PARENT
;M ^("A")=ATTR
N ZI S ZI="" ; INDEX FOR ATTR
F S ZI=$O(ATTR(ZI)) Q:ZI="" D ; FOR EACH ATTRIBUTE
. N ELE,TXT ; ABOUT TO RECURSE
. S ELE=ZI ; TAG
. S TXT=ATTR(ZI) ; DATA
. D STARTELE(ELE,"") ; CREATE A NEW SUBNODE
. D TXT^MXMLDOM("T") ; INSERT DATA TO TAG
. D ENDELE^MXMLDOM(ELE) ; POP BACK UP A LEVEL
Q
;
ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
N ZN
;I $$TAG(ZOID)["entry" B
S ZN=$$NXTSIB(ZOID)
I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
Q 0
;
FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
Q $$CHILD^MXMLDOM(C0CDOCID,ZOID)
;
PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
Q $$PARENT^MXMLDOM(C0CDOCID,ZOID)
;
ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
S HANDLE=C0CDOCID
K @RTN
D GETTXT^MXMLDOM("A")
Q
;
TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
;I ZOID=149 B ;GPLTEST
N X,Y
S Y=""
S X=$G(C0CCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
I Y="" S Y=$$NAME^MXMLDOM(C0CDOCID,ZOID)
Q Y
;
NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
Q $$SIBLING^MXMLDOM(C0CDOCID,ZOID)
;
DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
;N ZT,ZN S ZT=""
;S C0CDOM=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
;Q $G(@C0CDOM@(ZOID,"T",1))
S ZN=$$TEXT^MXMLDOM(C0CDOCID,ZOID,ZT)
Q
;
CLEANARY(OUTARY,INARY) ; GOES THROUGH AN ARRAY AND CALLS CLEAN ON EACH NODE
; INARY AND OUTARY PASSED BY NAME
N ZI S ZI=""
F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH NODE
. S @OUTARY@(ZI)=$$CLEAN(@INARY@(ZI)) ; CLEAN THE NODE
Q
;
CLEAN(STR) ; extrinsic function; returns string
;; Removes all non printable characters from a string.
;; STR by Value
N TR,I
F I=0:1:31 S TR=$G(TR)_$C(I)
S TR=TR_$C(127)
QUIT $TR(STR,TR)
;
STRIPTXT(OUTARY,ZARY) ; STRIPS THE "TEXT" PORTION OUT OF AN XML FILE
; THIS IS USED TO DELETE THE NARATIVE HTML OUT OF THE CCD XML FILES BECAUSE
; THEY DO NOT WORK RIGHT WITH THE PARSER
;N ZWRK,ZBLD,ZI ; WORK ARRAY,BUILD ARRAY, AND COUNTER
S ZI=$O(@ZARY@("")) ; GET FIRST LINE NUMBER
D C0CBEGIN("ZWRK",ZI) ; INSERT FIRST LINE IN WORK ARRAY
F S ZI=$O(@ZARY@(ZI)) Q:ZI="" D ; FOR EACH LINE OF THE ARRAY
. I $O(@ZARY@(ZI))="" D Q ; AT THE END
. . D C0CEND("ZWRK",ZI) ; INCLUDE LAST LINE IN WORK ARRAY
. I ZI=1 D C0CBEGIN("ZWRK",ZI) ; START WITH FIRST LINE
. I @ZARY@(ZI)["" D C0CBEGIN("ZWRK",ZI+1) ;NEXT LINE IS A BEGIN
S ZI=""
F S ZI=$O(ZWRK(ZI)) Q:ZI="" D ; MAKE A BUILD LIST FROM THE WORK ARRAY
. D QUEUE^C0CXPATH("ZBLD",ZARY,$P(ZWRK(ZI),"^",1),$P(ZWRK(ZI),"^",2))
D BUILD^C0CXPATH("ZBLD",OUTARY) ; BUILD NEW ARRAY WITHOUT TEXT SECTIONS
K @OUTARY@(0) ; GET RID OF THE LINE COUNT
Q
;
C0CBEGIN(ZA,LN) ; INSERTS A BEGIN LINE LN INTO ARRAY ZWRK, PASSED BY NAME
N ZI
S ZI=$O(@ZA@(""),-1)
I ZI="" S ZI=1
E S ZI=ZI+1 ; INCREMENT COUNT IN WORK ARRAY
S $P(@ZA@(ZI),"^",1)=LN
Q
;
C0CEND(ZB,LN) ; INSERTS AN END LINE LN INTO ARRAY ZWRK, PASSED BY NAME
N ZI
S ZI=$O(@ZB@(""),-1)
I ZI="" S ZI=1
S $P(@ZB@(ZI),"^",2)=LN
Q
;
SEPARATE(OUTARY,INARY) ; SEPARATES XPATH VARIABLES ACCORDING TO THEIR
; ROOT ; /Problems/etc/etc goes to @OUTARY@("Problems","/Problems/etc/etc")
S ZI=""
F S ZI=$O(@INARY@(ZI)) Q:ZI="" D ; FOR EACH ELEMENT OF THE ARRAY
. I $P(ZI,"//",2)'="" D ; FOR NON-BODY ENTRIES
. . S ZJ=$P(ZI,"/",4) ; things like From Patient Actor
. E D ; FOR BODY PARTS
. . S ZJ=$P(ZI,"/",2) ;
. . I ZJ="" S ZJ=$P(ZI,"/",3) ;
. S @OUTARY@(ZJ,ZI)=$G(@INARY@(ZI)) ;FIX THIS FOR MULTILINE COMMENTS
Q
;
FINDTID ; FIND TEMPLATE IDS IN DOM 1
S C0CDOCID=1
S ZD=$NA(^TMP("MXMLDOM",$J,C0CDOCID))
S ZN=""
S CURSEC=""
S TID=""
F S ZN=$O(@ZD@(ZN)) Q:ZN="" D ;
. I $$TAG(ZN)="root" D ;
. . I $$TAG($$PARENT(ZN))="templateId" D ; ONLY LOOKING FOR TEMPLATES
. . . S ZG=$$PARENT($$PARENT(ZN))
. . . S ZG2=$$PARENT(ZG) ;COMPONENT THAT HOLDS THIS SECTION
. . . S CMT=$G(@ZD@(ZG,"X",1))
. . . I CMT="" S CMT="?"
. . . I $$TAG(ZG)="section" D ;START OF A SECTION
. . . . S CURSEC=$$PARENT(ZG)
. . . . S SECCMT=$G(@ZD@(CURSEC,"X",1))
. . . . I SECCMT="" S SECCMT="?"
. . . . S SECTID=$G(@ZD@(ZN,"T",1)) ;SECTION TEMPLATE ID
. . . S TID=$G(@ZD@(ZN,"T",1)) ;TEMPLATE ID
. . . I CURSEC'="" D ; IF WE ARE IN A SECTION
. . . . S CCDDIR(ZG2,CURSEC,$$TAG(ZG2),CMT,SECCMT)=TID
. . . . S DOMMAP(ZG2)=CURSEC_U_$$TAG(ZG2)_U_TID_U_SECTID
. . . W !,$$TAG(ZG2)," ",$G(@ZD@(ZG,"X",1))
. . . W " root ",ZN," ",@ZD@(ZN,"T",1)
Q
;
FINDALT ; PROCESS THE DOMMAP AND FIND THE ALT TAGS FOR COMPONENTS
;
S ZI=""
F S ZI=$O(DOMMAP(ZI)) Q:ZI="" D ; FOR EACH NODE IN THE MAP
. S ZJ=DOMMAP(ZI) ;
. S PARNODE=$P(ZJ,U,1) ;PARENT NODE
. S TAG=$P(ZJ,U,2) ;THIS TAG
. S TID=$P(ZJ,U,3) ;THIS TEMPLATE ID
. S PARTID=$P(ZJ,U,4) ;PARENT TEMPLATE ID
. S ZIEN=$O(^C0CXDS(178.101,"TID",TID,"")) ;THIS NODE IEN
. S PARIEN=$O(^C0CXDS(178.101,"TID",PARTID,"")) ;PARENT NODE IEN
. I ZI=PARNODE D ; IF THIS IS A SECTION NODE
. . S ALTTAG=$$GET1^DIQ(178.101,PARIEN_",",.03) ;ALT TAG FIELD FOR PARENT
. . S NAME=$$GET1^DIQ(178.101,ZIEN_",",.01) ;NAME OF THIS NODE'S TEMPLATE
. . W ZI," ",TAG," ",ALTTAG," ",NAME,!
. . S C0CTAGS(ZI)=ALTTAG
. E D ; NOT A SECTION NODE
. . N ZJ S ZJ=""
. . S ZJ=$O(^C0CXDS(178.101,"D",PARIEN,ZIEN,"")) ;A WHEREUSED POINTER?
. . I ZJ'="" D ; THERE IS A NEW LABEL FOR THIS NODE
. . . N ZK
. . . S ZK=$$GET1^DIQ(178.111,ZJ_","_ZIEN_",",2)
. . . I ZK'="" D ;
. . . . W "FOUND ",ZK,!
. . . . S C0CTAGS(ZI)=ZK ; NEW TAG FOR INTERSECTION
Q
;
ALTTAG(NODE) ; SET Y EQUAL TO THE ALT TAG FOUND IN C0CTAGS IF NODE IF FOUND
;
S Y=$G(C0CTAGS(NODE))
Q
;
SETCBK ; SET THE TAG CALLBACK FOR XPATH PROCESSSING OF THE CCD
S C0CCBK("TAG")="D ALTTAG^C0CMCCD(ZOID)"
Q
;
OUTCCD(GARYIN) ; OUTPUT THE PARSED CCD TO A TEXT FILE
;D TEST3^C0CMXML
N ZT S ZT=$NA(^TMP("CCDOUT",$J))
N ZI,ZJ
S ZI=1 S ZJ=""
K @ZT
F S ZJ=$O(GARYIN(ZJ)) Q:ZJ="" D ;
. S @ZT@(ZI)=ZJ_"^"_GARYIN(ZJ)
. S ZI=ZI+1
S ONAME=$NA(@ZT@(1))
W $$OUTPUT^C0CXPATH(ONAME,"CCDOUT.txt","/home/vademo2/CCR")
K @ZT
Q
;
GENXDS(ZD) ; GENERATE THE XDS PROTOTYPE RECORDS FROM A CCDDIR ARRAY
; ARRAY ELEMENTS LOOK LIKE:
; CCDDIR(1659,1634,"observation"," Result observaion template "," Vital signs section template ")="2.16.840.1.113883.10.20.1.31"
;or CCDDIR(cur node,section node,cur tag,cur name,sec name)=templateId
S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
S DONE=0
F Q:DONE D ;
. W @ZI,!
. S ZJ=$QS(ZI,5)
. S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
. S C0CFDA(ZF,"?+1,",.01)=ZJ
. S C0CFDA(ZF,"?+1,",.02)=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
. S C0CFDA(ZF,"?+1,",1)=@ZI
. D UPDIE
. S ZI=$Q(@ZI)
. I ZI="" S DONE=1
Q
;
WHRUSD(ZD) ; UPDATE THE C0C XDS FILE WITH WHERE USED DATA FROM
; CCDDIR PASS BY NAME
; ARRAY ELEMENTS LOOK LIKE:
; CCDDIR(1634," Vital signs section template ",1659,"observation"," Result observaion template ")="2.16.840.1.113883.10.20.1.31"
;or CCDDIR(section node,sec name, cur node,cur tag,cur name)=templateId
S ZF=178.101 ; FILE NUMBER FOR THE C0C XDS PROTOTYPE FILE
S ZSF=178.111 ; WHERE USED SUBFILE OF C0C XDS PROTOTYPE FILE
S ZI=$Q(@ZD@("")) ;FIRST ARRAY ELEMENT
S DONE=0
F Q:DONE D ;
. W @ZI
. S ZIEN=$O(^C0CXDS(178.101,"TID",@ZI,"")) ; IEN FOR THIS NODE'S TEMPLATE
. W " IEN:",ZIEN
. S ZJ=$QS(ZI,2)
. S ZJ=$E(ZJ,2,$L(ZJ)) ;STRIP THE LEADING SPACE
. S ZPIEN=$O(^C0CXDS(178.101,"B",ZJ,"")) ; PARENT IEN
. W " PARENT IEN:",ZPIEN
. S ZTAG=$QS(ZI,4) ; TAG FOR THIS TEMPLATE
. W " TAG:",ZTAG,!
. I ZIEN'=ZPIEN D ; ONLY FOR CHILD TEMPLATES
. . S C0CFDA(ZSF,"?+1,"_ZIEN_",",.01)=ZPIEN ; NEW SUBFILE ENTRY WITH PAR PTR
. . S C0CFDA(ZSF,"?+1,"_ZIEN_",",1)=ZTAG ; TAG FOR NEW ENTRY
. . D UPDIE
. ;S C0CFDA(ZF,"?+1,",1)=@ZI
. ;D UPDIE
. S ZI=$Q(@ZI)
. I ZI="" S DONE=1
Q
;
UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
K ZERR
D CLEAN^DILF
D UPDATE^DIE("","C0CFDA","","ZERR")
I $D(ZERR) S $EC=",U1,"
K C0CFDA
Q
;