| 1 | C0CRIMA ; CCDCCR/GPL - RIM REPORT ROUTINES; 6/6/08
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| 2 | ;;1.0;C0C;;May 19, 2009;
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| 3 | ;Copyright 2008,2009 George Lilly, University of Minnesota.
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| 4 | ;Licensed under the terms of the GNU General Public License.
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| 5 | ;See attached copy of the License.
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| 6 | ;
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| 7 | ;This program is free software; you can redistribute it and/or modify
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| 8 | ;it under the terms of the GNU General Public License as published by
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| 9 | ;the Free Software Foundation; either version 2 of the License, or
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| 10 | ;(at your option) any later version.
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| 11 | ;
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| 12 | ;This program is distributed in the hope that it will be useful,
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| 13 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 14 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 15 | ;GNU General Public License for more details.
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| 16 | ;
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| 17 | ;You should have received a copy of the GNU General Public License along
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| 18 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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| 19 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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| 20 | ;
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| 21 | ; THESE ROUTINES EXAMINE ONE OR MORE, UP TO ALL, OF THE PATIENTS ON THE
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| 22 | ; SYSTEM TO DETERMINE HOW COMPLETE THE RESULTING CCR OR CCD WOULD BE FOR
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| 23 | ; THESE PATIENTS. IT BEGINS TO MEASURE "HL7 RIM COHERENCE" WHICH IS HOW USEFUL
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| 24 | ; THE VARIABLES WILL BE TO A RIM-MODELED APPLICATION AFTER THEY ARE
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| 25 | ; CONVEYED VIA THE CCR OR CCD.
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| 26 | ; FACTORS THAT AFFECT RIM COHERENCE INCLUDE:
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| 27 | ; 1. THE PRESENSE OF CLINICAL DATA IN A SECTION
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| 28 | ; 2. ARE THE DATA ELEMENTS TIME-BOUND
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| 29 | ; 3. ARE THE DATA ELEMENTS CODED WITH SNOMED OR LOINC ETC
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| 30 | ; 4. ARE SOURCE ACTORS ASSOCIATED WITH THE DATA ELEMENTS
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| 31 | ; 5. ARE ACTORS IDENTIFIED REGARDING THEIR ROLE
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| 32 | ; .. AND OTHER FACTORS YET TO BE DETERMINED
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| 33 | ;
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| 34 | ; SINCE THESE MEASUREMENTS ARE DONE AT THE VARIABLE LEVEL, THEY
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| 35 | ; REFLECT ON RIM COHERENCE WHETHER THE CCR OR THE CCD IS USED FOR
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| 36 | ; CONVEYANCE TO THE RIM APPLICATION.
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| 37 | ;
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| 38 | ;
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| 39 | ANALYZE(BEGDFN,DFNCNT,APARMS) ; RIM COHERANCE ANALYSIS ROUTINE
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| 40 | ; BEGINS AT BEGDFN AND GOES FOR DFNCNT PATIENTS
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| 41 | ; TO RESUME AT NEXT PATIENT, USE BEGDFN=""
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| 42 | ; USE RESET^C0CRIMA TO RESET TO TOP OF PATIENT LIST
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| 43 | ; APARMS ARE PARAMETERS TO BE USED IN THE EXTRACTION
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| 44 | ; SEE C0CPARMS FOR SUPPORTED PARAMTERS
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| 45 | ;
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| 46 | N RIMARY,RIMTMP,RIMI,RIMDFN,RATTR
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| 47 | N CCRGLO
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| 48 | S C0CCHK=0 ; CHECKSUM FLAG
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| 49 | D ASETUP ; SET UP VARIABLES AND GLOBALS
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| 50 | D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE
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| 51 | I '$D(@RIMBASE@("RESUME")) S @RIMBASE@("RESUME")=$O(^DPT(0)) ; FIRST TIME
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| 52 | S RESUME=@RIMBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN
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| 53 | S RIMDFN=BEGDFN ; BEGIN WITH THE BEGDFN PATIENT
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| 54 | I RIMDFN="" S RIMDFN=RESUME
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| 55 | I +RIMDFN=0 D Q ; AT THE END OF THE PATIENTS
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| 56 | . W "END OF PATIENT LIST, CALL RESET^C0CRIMA",!
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| 57 | I '$D(APARMS) S APARMS="" ; DEFAULT NO OVERRIDE PARMS
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| 58 | F RIMI=1:1:DFNCNT D Q:+RIMDFN=0 ; FOR DFNCNT NUMBER OF PATIENTS OR END
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| 59 | . K @RIMBASE@("VARS",RIMDFN) ; CLEAR OUT OLD VARS
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| 60 | . D CCRRPC^C0CCCR(.CCRGLO,RIMDFN,APARMS,"CCR") ;PROCESS THE CCR
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| 61 | . W RIMDFN,!
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| 62 | . ;
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| 63 | . ; COPY ALL THE VARIABLES TO THE RIM MAP AREA INDEXED BY PATIENT
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| 64 | . ;
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| 65 | . I $D(^TMP("C0CCCR",$J,"PROBVALS",1)) D ; PROBLEM VARS EXISTS
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| 66 | . . M @RIMBASE@("VARS",RIMDFN,"PROBLEMS")=^TMP("C0CCCR",$J,"PROBVALS")
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| 67 | . . S @RIMBASE@("VARS",RIMDFN,"PROBLEMS",0)=^TMP("C0CCCR",$J,"PROBVALS",0)
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| 68 | . I $D(^TMP("C0CCCR",$J,"VITALS",1)) D ; VITALS VARS EXISTS
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| 69 | . . M @RIMBASE@("VARS",RIMDFN,"VITALS")=^TMP("C0CCCR",$J,"VITALS")
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| 70 | . I $D(^TMP("C0CCCR",$J,"MEDMAP",1)) D ; MEDS VARS EXISTS
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| 71 | . . M @RIMBASE@("VARS",RIMDFN,"MEDS")=^TMP("C0CCCR",$J,"MEDMAP")
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| 72 | . I $D(^TMP("C0CCCR",$J,"ALERTS",1,"ALERTOBJECTID")) D ; ALERTS EXIST
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| 73 | . . W "FOUND ALERT VARS",!
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| 74 | . . M @RIMBASE@("VARS",RIMDFN,"ALERTS")=^TMP("C0CCCR",$J,"ALERTS")
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| 75 | . I $D(^TMP("C0CCCR",$J,"RESULTS",0)) D ; RESULTS EXIST
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| 76 | . . W "FOUND RESULTS VARS",!
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| 77 | . . M @RIMBASE@("VARS",RIMDFN,"RESULTS")=^TMP("C0CCCR",$J,"RESULTS")
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| 78 | . S C0CCHK=0
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| 79 | . I $$CHKSUM(RIMDFN) D ; CHECKSUM HAS CHANGED
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| 80 | . . W "CHECKSUM IS NEW OR HAS CHANGED",!
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| 81 | . . ;ZWR ^TMP("C0CRIM","CHKSUM",RIMDFN,*)
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| 82 | . . S C0CCHK=1
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| 83 | . K ^TMP("C0CCCR",$J) ; KILL WORK AREA FOR CCR BUILDING
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| 84 | . ;
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| 85 | . ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP
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| 86 | . ;
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| 87 | . S RATTR=$$SETATTR(RIMDFN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS
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| 88 | . S @RIMBASE@("ATTR",RIMDFN)=RATTR ; SAVE THE ATRIBUTES FOR THIS PAT
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| 89 | . ;
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| 90 | . ; INCREMENT THE COUNT OF PATIENTS WITH THESE ATTRIBUTES IN ATTRTBL
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| 91 | . ;
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| 92 | . ; I '$D(@RIMBASE@("ATTRTBL",RATTR)) D ; IF FIRST PAT WITH THESE ATTRS
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| 93 | . ; . S @RIMBASE@("ATTRTBL",RATTR)=0 ; DEFAULT VALUE TO BE INCREMENTED
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| 94 | . ; S @RIMBASE@("ATTRTBL",RATTR)=@RIMBASE@("ATTRTBL",RATTR)+1 ; INCREMENT
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| 95 | . ;
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| 96 | . N CATNAME,CATTBL
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| 97 | . ; S CATBASE=$NA(@RIMBASE@("ANALYSIS"))
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| 98 | . S CATNAME=""
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| 99 | . D CPUSH(.CATNAME,RIMBASE,"RIMTBL",RIMDFN,RATTR) ; ADD TO CATEGORY
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| 100 | . W "CATEGORY NAME: ",CATNAME,!
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| 101 | . ;
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| 102 | . F S RIMDFN=$O(^DPT(RIMDFN)) Q:'$$PTST^C0CSYS(RIMDFN) ; NEXT PATIENT
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| 103 | . ; PTST TESTS TO SEE IF PATIENT WAS MERGED
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| 104 | . ; IF CCRTEST=0, PTST WILL CHECK TO SEE IF THIS IS A TEST PATIENT
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| 105 | . ; AND WE SKIP IT
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| 106 | . S @RIMBASE@("RESUME")=RIMDFN ; WHERE WE ARE LEAVING OFF THIS RUN
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| 107 | ; D PARY^C0CXPATH(@RIMBASE@("ATTRTBL"))
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| 108 | Q
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| 109 | ;
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| 110 | SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS
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| 111 | N SBASE,SATTR
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| 112 | S SBASE=$NA(@RIMBASE@("VARS",SDFN))
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| 113 | D APOST("SATTR","RIMTBL","HEADER")
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| 114 | I $D(@SBASE@("PROBLEMS",1)) D ;
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| 115 | . D APOST("SATTR","RIMTBL","PROBLEMS")
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| 116 | . ; W "POSTING PROBLEMS",!
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| 117 | I $D(@SBASE@("VITALS",1)) D APOST("SATTR","RIMTBL","VITALS")
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| 118 | I $D(@SBASE@("IMMUNE",1)) D ;IMMUNIZATIONS PRESENT
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| 119 | . D APOST("SATTR","RIMTBL","IMMUNE")
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| 120 | . N ZR,ZI
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| 121 | . D GETPA(.ZR,SDFN,"IMMUNE","IMMUNEPRODUCTCODE")
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| 122 | . I ZR(0)>0 D APOST("SATTR","RIMTBL","IMMUNECODE") ;IMMUNIZATION CODES
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| 123 | I $D(@SBASE@("MEDS",1)) D ; IF THE PATIENT HAS MEDS VARIABLES
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| 124 | . D APOST("SATTR","RIMTBL","MEDS")
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| 125 | . N ZR,ZI
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| 126 | . D GETPA(.ZR,SDFN,"MEDS","MEDPRODUCTNAMECODEVALUE") ;CHECK FOR MED CODES
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| 127 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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| 128 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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| 129 | . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","RIMTBL","MEDSCODE") ;CODES
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| 130 | . ; D PATD^C0CRIMA(2,"MEDS","MEDPRODUCTNAMECODEVALUE") CHECK FOR MED CODES
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| 131 | I $D(@SBASE@("ALERTS",1)) D ; IF THE PATIENT HAS ALERTS
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| 132 | . D APOST("SATTR","RIMTBL","ALERTS")
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| 133 | . N ZR,ZI
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| 134 | . D GETPA(.ZR,SDFN,"ALERTS","ALERTAGENTPRODUCTCODEVALUE") ;REACTANT CODES
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| 135 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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| 136 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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| 137 | . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","RIMTBL","ALERTSCODE") ;CODES
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| 138 | I $D(@SBASE@("RESULTS",1)) D ; IF THE PATIENT HAS LABS VARIABLES
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| 139 | . D APOST("SATTR","RIMTBL","RESULTS")
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| 140 | . N ZR,ZI
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| 141 | . S ZR(0)=0 ; INITIALIZE TO NONE
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| 142 | . D RPCGV(.ZR,SDFN,"RESULTS") ;CHECK FOR LABS CODES
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| 143 | . ; D PARY^C0CXPATH("ZR") ;
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| 144 | . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN
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| 145 | . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS
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| 146 | . . . I $P(ZR(ZI),"^",2)="RESULTTESTCODINGSYSTEM" D ; LOINC CODE CHECK
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| 147 | . . . . I $P(ZR(ZI),"^",3)="LOINC" D APOST("SATTR","RIMTBL","RESULTSLN") ;
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| 148 | ; D APOST("SATTR","RIMTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED
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| 149 | W "ATTRIBUTES: ",SATTR,!
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| 150 | Q SATTR
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| 151 | ;
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| 152 | RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL RIM TMP VALUES
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| 153 | K ^TMP("C0CRIM","RESUME")
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| 154 | K ^TMP("C0CRIM")
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| 155 | Q
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| 156 | ;
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| 157 | CLIST ; LIST THE CATEGORIES
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| 158 | ;
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| 159 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 160 | N CLBASE,CLNUM,ZI,CLIDX
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| 161 | S CLBASE=$NA(@RIMBASE@("RIMTBL","CATS"))
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| 162 | S CLNUM=@CLBASE@(0)
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| 163 | F ZI=1:1:CLNUM D ; LOOP THROUGH THE CATEGORIES
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| 164 | . S CLIDX=@CLBASE@(ZI)
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| 165 | . W "(",$P(@CLBASE@(CLIDX),"^",1)
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| 166 | . W ":",$P(@CLBASE@(CLIDX),"^",2),") "
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| 167 | . W CLIDX,!
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| 168 | ; D PARY^C0CXPATH(CLBASE)
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| 169 | Q
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| 170 | ;
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| 171 | CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES
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| 172 | ; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT
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| 173 | ; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE
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| 174 | ; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME
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| 175 | ; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES,
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| 176 | ; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X"
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| 177 | ; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES
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| 178 | ; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY
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| 179 | ; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING
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| 180 | ; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY
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| 181 | ; NUMBER IE CTBL_X(CDFN)=""
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| 182 | ;
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| 183 | ; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST
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| 184 | S CCTBL=$NA(@CBASE@(CTBL,"CATS"))
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| 185 | W "CBASE: ",CCTBL,!
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| 186 | ;
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| 187 | I '$D(@CCTBL@(CATTR)) D ; FIRST PATIENT IN THIS CATEGORY
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| 188 | . D PUSH^C0CXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY
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| 189 | . S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY
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| 190 | . S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT
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| 191 | . S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY
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| 192 | . ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME
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| 193 | . ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0
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| 194 | ;
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| 195 | S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY
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| 196 | S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT
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| 197 | S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK
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| 198 | ;
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| 199 | S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED
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| 200 | ;
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| 201 | S CPATLIST=$NA(@CBASE@(CTBL,"PATS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT
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| 202 | W "PATS BASE: ",CPATLIST,!
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| 203 | S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST
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| 204 | ;
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| 205 | Q
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| 206 | ;
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| 207 | CHKSUM(CKDFN) ; DOES A CHECKSUM AND STORES IT IN MUMPS GLOBALS
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| 208 | ;
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| 209 | S C0CCKB=$NA(^TMP("C0CRIM","CHKSUM")) ;CHECKSUM BASE
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| 210 | S C0CGLB=$NA(^TMP("C0CRIM","VARS")) ;CCR VARIABLE BASE
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| 211 | S C0CI=""
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| 212 | F S C0CI=$O(@C0CGLB@(CKDFN,C0CI)) Q:C0CI="" D ;FOR EACH DOMAIN
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| 213 | . ;W "DFN:",CKDFN," DOMAIN:",C0CI,!
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| 214 | . S C0CJ=$NA(@C0CGLB@(CKDFN,C0CI))
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| 215 | . I C0CI="HEADER" D ; HAVE TO TAKE OUT THE "DATE GENERATED"
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| 216 | . . S C0CDT=@C0CGLB@(CKDFN,C0CI,1,"DATETIME")
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| 217 | . . K @C0CGLB@(CKDFN,C0CI,1,"DATETIME")
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| 218 | . S C0CCK(C0CI)=$$CHKSUM^XUSESIG1(C0CJ)
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| 219 | . I C0CI="HEADER" D ; PUT IT BACK
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| 220 | . . S @C0CGLB@(CKDFN,C0CI,1,"DATETIME")=C0CDT
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| 221 | S C0CK="C0CCK" ;
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| 222 | S C0CALL=$$CHKSUM^XUSESIG1(C0CK) ;CHECKSUM OF ALL DOMAIN CHECKSUMS
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| 223 | S CHKR=0 ; RESULT DEFAULT
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| 224 | I $D(^TMP("C0CRIM","CHKSUM",CKDFN,"ALL")) D ; OLD CHECKSUM EXISTS
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| 225 | . I @C0CCKB@(CKDFN,"ALL")'=C0CALL S CHKR=1
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| 226 | E S CHKR=1 ;CHECKSUM IS NEW
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| 227 | S @C0CCKB@(CKDFN,"ALL")=C0CALL
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| 228 | M @C0CCKB@(CKDFN,"DOMAIN")=C0CCK
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| 229 | ;ZWR ^TMP("C0CRIM","CHKSUM",CKDFN,*)
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| 230 | Q CHKR
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| 231 | ;
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| 232 | CCOUNT ; RECOUNT THE CATEGORIES.. USE IN CASE OF RESTART OF ANALYZE
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| 233 | ;
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| 234 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 235 | N ZI,ZJ,ZCNT,ZIDX,ZCAT,ZATR,ZTOT
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| 236 | S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
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| 237 | S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
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| 238 | S ZTOT=0 ; INITIALIZE OVERALL TOTAL
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| 239 | F ZI=1:1:@ZCBASE@(0) D ; FOR ALL CATS
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| 240 | . S ZCNT=0
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| 241 | . S ZATR=@ZCBASE@(ZI) ; THE ATTRIBUTE OF THE CATEGORY
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| 242 | . S ZCAT=$P(@ZCBASE@(ZATR),"^",1) ; USE IT TO LOOK UP THE CATEGORY NAME
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| 243 | . ; S ZIDX=$O(@ZPBASE@(ZCAT,"")) ; FIRST PATIENT IN LIST
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| 244 | . ; F ZJ=0:0 D Q:$O(@ZPBASE@(ZCAT,ZIDX))="" ; ALL PATIENTS IN THE LISTS
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| 245 | . ; . S ZCNT=ZCNT+1 ; INCREMENT THE COUNT
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| 246 | . ; . W ZCAT," DFN:",ZIDX," COUNT:",ZCNT,!
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| 247 | . ; . S ZIDX=$O(@ZPBASE@(ZCAT,ZIDX))
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| 248 | . S ZCNT=$$CNTLST($NA(@ZPBASE@(ZCAT)))
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| 249 | . S $P(@ZCBASE@(ZATR),"^",2)=ZCNT ; UPDATE THE COUNT IN THE CAT RECORD
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| 250 | . S ZTOT=ZTOT+ZCNT
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| 251 | W "TOTAL: ",ZTOT,!
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| 252 | Q
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| 253 | ;
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| 254 | CNTLST(INLST) ; RETURNS THE NUMBER OF ELEMENTS IN THE LIST
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| 255 | ; INLST IS PASSED BY NAME
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| 256 | N ZI,ZDX,ZCOUNT
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| 257 | W INLST,!
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| 258 | S ZCOUNT=0
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| 259 | S ZDX=""
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| 260 | F ZI=$O(@INLST@(ZDX)):0 D Q:$O(@INLST@(ZDX))="" ; LOOP UNTIL THE END
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| 261 | . S ZCOUNT=ZCOUNT+1
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| 262 | . S ZDX=$O(@INLST@(ZDX))
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| 263 | . W "ZDX:",ZDX," ZCNT:",ZCOUNT,!
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| 264 | Q ZCOUNT
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| 265 | ;
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| 266 | XCPAT(CPATCAT,CPATPARM) ; EXPORT TO FILE ALL PATIENTS IN CATEGORY CPATCAT
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| 267 | ;
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| 268 | I '$D(CPATPARM) S CPATPARM=""
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| 269 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 270 | N ZI,ZJ,ZC,ZPATBASE
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| 271 | S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
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| 272 | S ZI=""
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| 273 | F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
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| 274 | . S ZI=$O(@ZPATBASE@(ZI))
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| 275 | . D XPAT^C0CCCR(ZI,CPATPARM) ; EXPORT THE PATIENT TO A FILE
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| 276 | Q
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| 277 | ;
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| 278 | CPAT(CPATCAT) ; SHOW PATIENT DFNS FOR A CATEGORY CPATCAT
|
|---|
| 279 | ;
|
|---|
| 280 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
|
|---|
| 281 | N ZI,ZJ,ZC,ZPATBASE
|
|---|
| 282 | S ZC=0 ; COUNT FOR SPACING THE PRINTOUT
|
|---|
| 283 | S ZPATBASE=$NA(@RIMBASE@("RIMTBL","PATS",CPATCAT))
|
|---|
| 284 | S ZI=""
|
|---|
| 285 | F ZJ=0:0 D Q:$O(@ZPATBASE@(ZI))="" ; TIL END
|
|---|
| 286 | . S ZI=$O(@ZPATBASE@(ZI))
|
|---|
| 287 | . S ZC=ZC+1 ; INCREMENT OUTPUT PER LINE COUNT
|
|---|
| 288 | . W ZI," "
|
|---|
| 289 | . I ZC=10 D ; NEW LINE
|
|---|
| 290 | . . S ZC=0
|
|---|
| 291 | . . W !
|
|---|
| 292 | Q
|
|---|
| 293 | ;
|
|---|
| 294 | PATC(DFN) ; DISPLAY THE CATEGORY FOR THIS PATIENT
|
|---|
| 295 | ;
|
|---|
| 296 | N ATTR S ATTR=""
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|---|
| 297 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
|
|---|
| 298 | . D ANALYZE(DFN,1) ; EXTRACT THE RIM VARIABLE FOR THIS PATIENT
|
|---|
| 299 | S ATTR=^TMP("C0CRIM","ATTR",DFN)
|
|---|
| 300 | I ATTR="" W "THIS PATIENT NOT ANALYZED.",! Q ;NO ATTRIBUTES FOUND
|
|---|
| 301 | I $D(^TMP("C0CRIM","RIMTBL","CATS",ATTR)) D ; FOUND A CAT
|
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| 302 | . N CAT
|
|---|
| 303 | . S CAT=$P(^TMP("C0CRIM","RIMTBL","CATS",ATTR),U,1) ; LOOK UP THE CAT
|
|---|
| 304 | . W CAT,": ",ATTR,!
|
|---|
| 305 | Q
|
|---|
| 306 | ;
|
|---|
| 307 | APUSH(AMAP,AVAL) ; ADD AVAL TO ATTRIBUTE MAP AMAP (AMAP PASSED BY NAME)
|
|---|
| 308 | ; AMAP IS FORMED FOR ARRAY ACCESS: AMAP(0) IS THE COUNT
|
|---|
| 309 | ; AND AMAP(N)=AVAL IS THE NTH AVAL
|
|---|
| 310 | ; ALSO HASH ACCESS AMAP(AVAL)=N WHERE N IS THE ASSIGNED ORDER OF THE
|
|---|
| 311 | ; MAP VALUE. INSTANCES OF THE MAP WILL USE $P(X,U,N)=AVAL TO PLACE
|
|---|
| 312 | ; THE ATTRIBUTE IN ITS RIGHT PLACE. THE ATTRIBUTE VALUE IS STORED
|
|---|
| 313 | ; SO THAT DIFFERENT MAPS CAN BE AUTOMATICALLY CROSSWALKED
|
|---|
| 314 | ;
|
|---|
| 315 | I '$D(@AMAP) D ; IF THE MAP DOES NOT EXIST
|
|---|
| 316 | . S @AMAP@(0)=0 ; HAS ZERO ELEMENTS
|
|---|
| 317 | S @AMAP@(0)=@AMAP@(0)+1 ;INCREMENT ELEMENT COUNT
|
|---|
| 318 | S @AMAP@(@AMAP@(0))=AVAL ; ADD THE VALUE TO THE ARRAY
|
|---|
| 319 | S @AMAP@(AVAL)=@AMAP@(0) ; ADD THE VALUE TO THE HASH WITH ARRAY REF
|
|---|
| 320 | Q
|
|---|
| 321 | ;
|
|---|
| 322 | ASETUP ; SET UP GLOBALS AND VARS RIMBASE AND RIMTBL
|
|---|
| 323 | I '$D(RIMBASE) S RIMBASE=$NA(^TMP("C0CRIM"))
|
|---|
| 324 | I '$D(@RIMBASE) S @RIMBASE=""
|
|---|
| 325 | I '$D(RIMTBL) S RIMTBL=$NA(^TMP("C0CRIM","RIMTBL","TABLE")) ; ATTR TABLE
|
|---|
| 326 | S ^TMP("C0CRIM","TABLES","RIMTBL")=RIMTBL ; TABLE OF TABLES
|
|---|
| 327 | Q
|
|---|
| 328 | ;
|
|---|
| 329 | AINIT ; INITIALIZE ATTRIBUTE TABLE
|
|---|
| 330 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
|
|---|
| 331 | K @RIMTBL
|
|---|
| 332 | D APUSH(RIMTBL,"EXTRACTED")
|
|---|
| 333 | D APUSH(RIMTBL,"NOTEXTRACTED")
|
|---|
| 334 | D APUSH(RIMTBL,"HEADER")
|
|---|
| 335 | D APUSH(RIMTBL,"NOPCP")
|
|---|
| 336 | D APUSH(RIMTBL,"PCP")
|
|---|
| 337 | D APUSH(RIMTBL,"PROBLEMS")
|
|---|
| 338 | D APUSH(RIMTBL,"PROBCODE")
|
|---|
| 339 | D APUSH(RIMTBL,"PROBNOCODE")
|
|---|
| 340 | D APUSH(RIMTBL,"PROBDATE")
|
|---|
| 341 | D APUSH(RIMTBL,"PROBNODATE")
|
|---|
| 342 | D APUSH(RIMTBL,"VITALS")
|
|---|
| 343 | D APUSH(RIMTBL,"VITALSCODE")
|
|---|
| 344 | D APUSH(RIMTBL,"VITALSNOCODE")
|
|---|
| 345 | D APUSH(RIMTBL,"VITALSDATE")
|
|---|
| 346 | D APUSH(RIMTBL,"VITALSNODATE")
|
|---|
| 347 | D APUSH(RIMTBL,"IMMUNE")
|
|---|
| 348 | D APUSH(RIMTBL,"IMMUNECODE")
|
|---|
| 349 | D APUSH(RIMTBL,"MEDS")
|
|---|
| 350 | D APUSH(RIMTBL,"MEDSCODE")
|
|---|
| 351 | D APUSH(RIMTBL,"MEDSNOCODE")
|
|---|
| 352 | D APUSH(RIMTBL,"MEDSDATE")
|
|---|
| 353 | D APUSH(RIMTBL,"MEDSNODATE")
|
|---|
| 354 | D APUSH(RIMTBL,"ALERTS")
|
|---|
| 355 | D APUSH(RIMTBL,"ALERTSCODE")
|
|---|
| 356 | D APUSH(RIMTBL,"RESULTS")
|
|---|
| 357 | D APUSH(RIMTBL,"RESULTSLN")
|
|---|
| 358 | Q
|
|---|
| 359 | ;
|
|---|
| 360 | APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL
|
|---|
| 361 | ; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING
|
|---|
| 362 | ; PTBL IS THE NAME OF A TABLE IN @RIMBASE@("TABLES") - "RIMTBL"=ALL VALUES
|
|---|
| 363 | ; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL))
|
|---|
| 364 | I '$D(RIMBASE) D ASETUP ; FOR COMMANDLINE PROCESSING
|
|---|
| 365 | N USETBL
|
|---|
| 366 | I '$D(@RIMBASE@("TABLES",PTBL)) D Q ; NO TABLE
|
|---|
| 367 | . W "ERROR NO SUCH TABLE",!
|
|---|
| 368 | S USETBL=@RIMBASE@("TABLES",PTBL)
|
|---|
| 369 | S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL
|
|---|
| 370 | Q
|
|---|
| 371 | GETPA(RTN,DFN,ISEC,IVAR) ; RETURNS ARRAY OF RIM VARIABLES FOR PATIENT DFN
|
|---|
| 372 | ; EXAMPLE: D GETPA(.RT,2,"MEDS","MEDSSTATUSTEXT")
|
|---|
| 373 | ; RETURNS AN ARRAY RT OF VALUES OF MEDSTATUSTEXT FOR PATIENT 2 IN P2
|
|---|
| 374 | ; IN SECTION "MEDS"
|
|---|
| 375 | ; P1 IS THE IEN OF THE MED WITH THE VALUE IE 2^PENDING WOULD BE STATUS
|
|---|
| 376 | ; PENDING FOR MED 2 FOR PATIENT 2
|
|---|
| 377 | ; RT(0) IS THE COUNT OF HOW MANY IN THE ARRAY. NULL VALUES ARE
|
|---|
| 378 | ; RETURNED. RTN IS PASSED BY REFERENCE
|
|---|
| 379 | ;
|
|---|
| 380 | S RTN(0)=0 ; SET NULL DEFAULT RETURN VALUE
|
|---|
| 381 | I '$D(RIMBASE) D AINIT ; INITIALIZE GLOBAL NAMES AND TABLES
|
|---|
| 382 | S ZVBASE=$NA(@RIMBASE@("VARS")) ; BASE OF VARIABLES
|
|---|
| 383 | I '$D(@ZVBASE@(DFN,ISEC,0)) D Q ; NO VARIABLES IN SECTION
|
|---|
| 384 | . W "NO VARIABLES IN THIS SECTION FOR PATIENT ",DFN,!
|
|---|
| 385 | N ZZI,ZZS
|
|---|
| 386 | S ZZS=$NA(@ZVBASE@(DFN,ISEC)) ; SECTION VARIABLE ARRAY FOR THIS PATIENT
|
|---|
| 387 | ; ZWR @ZZS@(1)
|
|---|
| 388 | S RTN(0)=@ZZS@(0)
|
|---|
| 389 | F ZZI=1:1:RTN(0) D ; FOR ALL PARTS OF THIS SECTION ( IE FOR ALL MEDS)
|
|---|
| 390 | . S $P(RTN(ZZI),"^",1)=ZZI ; INDEX FOR VARIABLE
|
|---|
| 391 | . S $P(RTN(ZZI),"^",2)=@ZZS@(ZZI,IVAR) ; THE VALUE OF THE VARIABLE
|
|---|
| 392 | Q
|
|---|
| 393 | ;
|
|---|
| 394 | PATD(DFN,ISEC,IVAR) ; DISPLAY FOR PATIENT DFN THE VARIABLE IVAR
|
|---|
| 395 | ;
|
|---|
| 396 | N ZR
|
|---|
| 397 | D GETPA(.ZR,DFN,ISEC,IVAR)
|
|---|
| 398 | I $D(ZR(0)) D PARY^C0CXPATH("ZR")
|
|---|
| 399 | E W "NOTHING RETURNED",!
|
|---|
| 400 | Q
|
|---|
| 401 | ;
|
|---|
| 402 | CAGET(RTN,IATTR) ;
|
|---|
| 403 | ; GETPA LOOKS AT RIMTBL TO FIND PATIENTS WITH ATTRIBUTE IATTR
|
|---|
| 404 | ; IT DOES NOT SEARCH ALL PATIENTS, ONLY THE ONES WITH THE ATTRIBUTE
|
|---|
| 405 | ; IT RETURNS AN ARRAY OF THE VALUES OF VARIABLE IVAR IN SECTION ISEC
|
|---|
| 406 | Q
|
|---|
| 407 | ;
|
|---|
| 408 | PCLST(LSTRTN,IATTR) ; RETURNS ARRAY OF PATIENTS WITH ATTRIBUTE IATTR
|
|---|
| 409 | ;
|
|---|
| 410 | I '$D(RIMBASE) D AINIT ; INITIALIZE GLOBAL NAMES AND TABLES
|
|---|
| 411 | N ZLST
|
|---|
| 412 | S LSTRTN(0)=0 ; DEFAULT RETURN NONE
|
|---|
| 413 | S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
|
|---|
| 414 | S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
|
|---|
| 415 | N ZNC ; ZNC IS NUMBER OF CATEGORIES
|
|---|
| 416 | S ZNC=@ZCBASE@(0)
|
|---|
| 417 | I ZNC=0 Q ; NO CATEGORIES TO SEARCH
|
|---|
| 418 | N ZAP ; ZAP IS THE PIECE INDEX OF THE ATTRIBUTE IN THE RIM ATTR TABLE
|
|---|
| 419 | S ZAP=@RIMBASE@("RIMTBL","TABLE",IATTR)
|
|---|
| 420 | N ZI,ZCATTBL,ZATBL,ZCNT,ZPAT
|
|---|
| 421 | F ZI=1:1:ZNC D ; FOR ALL CATEGORIES
|
|---|
| 422 | . S ZATBL=@ZCBASE@(ZI) ; PULL OUT ATTR TBL FOR CAT
|
|---|
| 423 | . I $P(ZATBL,"^",ZAP)'="" D ; CAT HAS ATTR
|
|---|
| 424 | . . S ZCATTBL=$P(@ZCBASE@(ZATBL),"^",1) ; NAME OF TBL
|
|---|
| 425 | . . M LSTRTN=@ZPBASE@(ZCATTBL) ; MERGE PATS FROM CAT
|
|---|
| 426 | S ZCNT=0 ; INITIALIZE COUNT OF PATIENTS
|
|---|
| 427 | S ZPAT=0 ; START AT FIRST PATIENT IN LIST
|
|---|
| 428 | F S ZPAT=$O(LSTRTN(ZPAT)) Q:ZPAT="" D ;
|
|---|
| 429 | . S ZCNT=ZCNT+1
|
|---|
| 430 | S LSTRTN(0)=ZCNT ; COUNT OF PATIENTS IN ARRAY
|
|---|
| 431 | Q
|
|---|
| 432 | ;
|
|---|
| 433 | DCPAT(CATTR) ; DISPLAY LIST OF PATIENTS WITH ATTRIBUTE CATTR
|
|---|
| 434 | ;
|
|---|
| 435 | N ZR
|
|---|
| 436 | D PCLST(.ZR,CATTR)
|
|---|
| 437 | I ZR(0)=0 D Q ;
|
|---|
| 438 | . W "NO PATIENTS RETURNED",!
|
|---|
| 439 | E D ;
|
|---|
| 440 | . D PARY^C0CXPATH("ZR") ; PRINT ARRAY
|
|---|
| 441 | . W "COUNT=",ZR(0),!
|
|---|
| 442 | Q
|
|---|
| 443 | ;
|
|---|
| 444 | RPCGV(RTN,DFN,WHICH) ; RPC GET VARS
|
|---|
| 445 | ; RETURNS IN RTN (PASSED BY REFERENCE) THE VARS AND VALUES
|
|---|
| 446 | ; FOUND AT INARY RTN(X)="VAR^VALUE" RTN(0) IS THE COUNT
|
|---|
| 447 | ; DFN IS THE PATIENT NUMBER.
|
|---|
| 448 | ; WHICH IS "ALL","MEDS","VITALS","PROBLEMS","ALERTS","RESULTS","IMMUNE"
|
|---|
| 449 | ; OR OTHER SECTIONS AS THEY ARE ADDED
|
|---|
| 450 | ; THIS IS MEANT TO BE AVAILABLE AS AN RPC
|
|---|
| 451 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
|
|---|
| 452 | S ZVBASE=$NA(@RIMBASE@("VARS")) ; BASE OF VARIABLES
|
|---|
| 453 | S RTN(0)=0 ; DEFAULT NOTHING IS RETURNED
|
|---|
| 454 | N ZZGI
|
|---|
| 455 | I WHICH="ALL" D ; VARIABLES FROM ALL SECTIONS
|
|---|
| 456 | . F ZZGI="HEADER","PROBLEMS","VITALS","MEDS","ALERTS","RESULTS","IMMUNE" D ;
|
|---|
| 457 | . . D ZGVWRK(ZZGI) ; DO EACH SECTION
|
|---|
| 458 | . . I $G(DEBUG)'="" W "DID ",ZZGI,!
|
|---|
| 459 | E D ZGVWRK(WHICH) ; ONLY ONE SECTION ASKED FOR
|
|---|
| 460 | Q
|
|---|
| 461 | ;
|
|---|
| 462 | ZGVWRK(ZWHICH) ; DO ONE SECTION FOR RPCGV
|
|---|
| 463 | ;
|
|---|
| 464 | N ZZGN ; NAME FOR SECTION VARIABLES
|
|---|
| 465 | S ZZGN=$NA(@ZVBASE@(DFN,ZWHICH)) ; BASE OF VARS FOR SECTION
|
|---|
| 466 | I '$D(@ZZGN@(0)) Q ; NO VARS FOR THIS SECTION
|
|---|
| 467 | E D ; VARS EXIST
|
|---|
| 468 | . N ZGVI
|
|---|
| 469 | . F ZGVI=1:1:@ZZGN@(0) D ; FOR EACH MULTIPLE IN SECTION
|
|---|
| 470 | . . K ZZGA N ZZGA ; TEMP ARRAY FOR SECTION VARS
|
|---|
| 471 | . . K ZZGN2 N ZZGN2 ; NAME FOR MULTIPLE
|
|---|
| 472 | . . S ZZGN2=$NA(@ZZGN@(ZGVI))
|
|---|
| 473 | . . I $G(DEBUG)'="" W ZZGN2,!,$O(@ZZGN2@("")),!
|
|---|
| 474 | . . D H2ARY^C0CXPATH("ZZGA",ZZGN2,ZGVI) ; CONVERT HASH TO ARRAY
|
|---|
| 475 | . . ; D PARY^C0CXPATH("ZZGA")
|
|---|
| 476 | . . D PUSHA^C0CXPATH("RTN","ZZGA") ; PUSH ARRAY INTO RETURN
|
|---|
| 477 | Q
|
|---|
| 478 | ;
|
|---|
| 479 | DPATV(DFN,IWHICH) ; DISPLAY VARS FOR PATIENT DFN THAT ARE MAINTAINED IN C0CRIM
|
|---|
| 480 | ; ALONG WITH SAMPLE VALUES.
|
|---|
| 481 | ; IWHICH IS "ALL","MEDS","VITALS","PROBLEMS","ALERTS","RESULTS","HEADER"
|
|---|
| 482 | N GTMP
|
|---|
| 483 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
|
|---|
| 484 | . D ANALYZE(DFN,1) ; REFRESH THE RIM VARIABLES
|
|---|
| 485 | I '$D(IWHICH) S IWHICH="ALL"
|
|---|
| 486 | D RPCGV(.GTMP,DFN,IWHICH)
|
|---|
| 487 | D PARY^C0CXPATH("GTMP")
|
|---|
| 488 | Q
|
|---|
| 489 | ;
|
|---|
| 490 | RIM2RNF(R2RTN,DFN,RWHICH) ; CONVERTS RIM VARIABLES TO RNF2 FORMAT
|
|---|
| 491 | ; RETURN IN R2RTN, WHICH IS PASSED BY NAME
|
|---|
| 492 | ; RWHICH IS RIM SECTION TO RETURN, DEFAULTS TO "ALL"
|
|---|
| 493 | ;
|
|---|
| 494 | I '$D(RWHICH) S RWHICH="ALL"
|
|---|
| 495 | ;N R2TMP
|
|---|
| 496 | I '$D(^TMP("C0CRIM","ATTR",DFN)) D ; RIM VARS NOT PRESENT
|
|---|
| 497 | . D ANALYZE(DFN,1) ; REFRESH THE RIM VARIABLES
|
|---|
| 498 | D RPCGV(.R2TMP,DFN,RWHICH) ; RETRIEVE ALL THE VARIABLES I AN ARRAY
|
|---|
| 499 | N R2I,R2J,R2X,R2X1,R2X2,R2Y,R2Z
|
|---|
| 500 | F R2I=1:1:R2TMP(0) D ; FOR EVERY LINE OF THE ARRAY
|
|---|
| 501 | . S R2X=$P(R2TMP(R2I),"^",1) ; OCCURANCE
|
|---|
| 502 | . S R2Y=$P(R2TMP(R2I),"^",2) ; VARIABLE NAME
|
|---|
| 503 | . I $L(R2Y)<4 Q ; SKIP SHORT VARIABLES (THEY ARE FOR DEBUGGING)
|
|---|
| 504 | . S R2Z=$P(R2TMP(R2I),"^",3) ; VALUE
|
|---|
| 505 | . I R2X[";" D ; THERES MULTIPLES
|
|---|
| 506 | . . S R2X1=$P(R2X,";",1) ; FIRST INDEX
|
|---|
| 507 | . . S R2X2=$P(R2X,";",2) ; SECOND INDEX
|
|---|
| 508 | . . S R2J=R2Y_"["_R2X2_"]" ; BUILD THE VARIABLE NAME
|
|---|
| 509 | . . S @R2RTN@("F",R2J,1)="" ; PUT VARIABLE NAME IN FIELD MAP
|
|---|
| 510 | . . S @R2RTN@("V",R2X1,R2J,1)=R2Z ; PUT THE VALUE IN THE ARRAY
|
|---|
| 511 | . E D ; NO SUB-MULTIPLES
|
|---|
| 512 | . . S @R2RTN@("F",R2Y,1)="" ; PUT VARIABLE NAME IN FIELD MAP
|
|---|
| 513 | . . S @R2RTN@("V",R2X,R2Y,1)=R2Z ; PUT THE VALUE IN THE ARRAY
|
|---|
| 514 | Q
|
|---|
| 515 | ;
|
|---|
| 516 | RIM2CSV(DFN) ; WRITE THE RIM VARIABLES FOR A PATIENT TO A CSV FILE
|
|---|
| 517 | ;
|
|---|
| 518 | N R2CTMP,R2CARY
|
|---|
| 519 | D RIM2RNF("R2CTMP",DFN) ; CONVERT VARIABLES TO RNF FORMAT
|
|---|
| 520 | D RNF2CSV^C0CRNF("R2CARY","R2CTMP","NV") ; CONVERT RNF TO CSV FORMAT
|
|---|
| 521 | D FILEOUT^C0CRNF("R2CARY","VARS-"_DFN_".csv")
|
|---|
| 522 | Q
|
|---|
| 523 | ;
|
|---|
