| 1 | GPLRIMA ; CCDCCR/GPL - RIM REPORT ROUTINES; 6/6/08
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| 2 | ;;0.1;CCDCCR;nopatch;noreleasedate
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| 3 | ;Copyright 2008 WorldVistA. Licensed under the terms of the GNU
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| 4 | ;General Public License See attached copy of the License.
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| 5 | ;
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| 6 | ;This program is free software; you can redistribute it and/or modify
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| 7 | ;it under the terms of the GNU General Public License as published by
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| 8 | ;the Free Software Foundation; either version 2 of the License, or
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| 9 | ;(at your option) any later version.
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| 10 | ;
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| 11 | ;This program is distributed in the hope that it will be useful,
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| 12 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 13 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 14 | ;GNU General Public License for more details.
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| 15 | ;
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| 16 | ;You should have received a copy of the GNU General Public License along
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| 17 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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| 18 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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| 19 | ;
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| 20 | ; THESE ROUTINES EXAMINE ONE OR MORE, UP TO ALL, OF THE PATIENTS ON THE
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| 21 | ; SYSTEM TO DETERMINE HOW COMPLETE THE RESULTING CCR OR CCD WOULD BE FOR
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| 22 | ; THESE PATIENTS. IT BEGINS TO MEASURE "HL7 RIM COHERENCE" WHICH IS HOW USEFUL
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| 23 | ; THE VARIABLES WILL BE TO A RIM-MODELED APPLICATION AFTER THEY ARE
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| 24 | ; CONVEYED VIA THE CCR OR CCD.
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| 25 | ; FACTORS THAT AFFECT RIM COHERENCE INCLUDE:
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| 26 | ; 1. THE PRESENSE OF CLINICAL DATA IN A SECTION
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| 27 | ; 2. ARE THE DATA ELEMENTS TIME-BOUND
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| 28 | ; 3. ARE THE DATA ELEMENTS CODED WITH SNOMED OR LOINC ETC
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| 29 | ; 4. ARE SOURCE ACTORS ASSOCIATED WITH THE DATA ELEMENTS
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| 30 | ; 5. ARE ACTORS IDENTIFIED REGARDING THEIR ROLE
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| 31 | ; .. AND OTHER FACTORS YET TO BE DETERMINED
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| 32 | ;
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| 33 | ; SINCE THESE MEASUREMENTS ARE DONE AT THE VARIABLE LEVEL, THEY
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| 34 | ; REFLECT ON RIM COHERENCE WHETHER THE CCR OR THE CCD IS USED FOR
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| 35 | ; CONVEYANCE TO THE RIM APPLICATION.
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| 36 | ;
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| 37 | ;
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| 38 | ANALYZE(BEGDFN,DFNCNT) ; RIM COHERANCE ANALYSIS ROUTINE
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| 39 | ; BEGINS AT BEGDFN AND GOES FOR DFNCNT PATIENTS
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| 40 | ; TO RESUME AT NEXT PATIENT, USE BEGDFN=""
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| 41 | ; USE RESET^GPLRIMA TO RESET TO TOP OF PATIENT LIST
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| 42 | ;
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| 43 | N RIMARY,RIMTMP,RIMI,RIMDFN,RATTR
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| 44 | N CCRGLO
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| 45 | D ASETUP ; SET UP VARIABLES AND GLOBALS
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| 46 | D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE
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| 47 | I '$D(@RIMBASE@("RESUME")) S @RIMBASE@("RESUME")=$O(^DPT(0)) ; FIRST TIME
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| 48 | S RESUME=@RIMBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN
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| 49 | S RIMDFN=BEGDFN ; BEGIN WITH THE BEGDFN PATIENT
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| 50 | I RIMDFN="" S RIMDFN=RESUME
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| 51 | I +RIMDFN=0 D Q ; AT THE END OF THE PATIENTS
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| 52 | . W "END OF PATIENT LIST, CALL RESET^GPLRIMA",!
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| 53 | F RIMI=1:1:DFNCNT D Q:+RIMDFN=0 ; FOR DFNCNT NUMBER OF PATIENTS OR END
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| 54 | . D CCRRPC^GPLCCR(.CCRGLO,RIMDFN,"CCR","","","") ;PROCESS THE CCR
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| 55 | . W RIMDFN,!
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| 56 | . K @RIMBASE@("VARS",RIMDFN) ; CLEAR OUT OLD VARS
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| 57 | . ;
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| 58 | . ; COPY ALL THE VARIABLES TO THE RIM MAP AREA INDEXED BY PATIENT
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| 59 | . ;
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| 60 | . I $D(^TMP("GPLCCR",$J,"PROBVALS",1)) D ; PROBLEM VARS EXISTS
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| 61 | . . M @RIMBASE@("VARS",RIMDFN,"PROBLEMS")=^TMP("GPLCCR",$J,"PROBVALS")
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| 62 | . I $D(^TMP("GPLCCR",$J,"VITALS",1)) D ; VITALS VARS EXISTS
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| 63 | . . M @RIMBASE@("VARS",RIMDFN,"VITALS")=^TMP("GPLCCR",$J,"VITALS")
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| 64 | . I $D(^TMP("GPLCCR",$J,"MEDICATIONS",1)) D ; MEDS VARS EXISTS
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| 65 | . . M @RIMBASE@("VARS",RIMDFN,"MEDS")=^TMP("GPLCCR",$J,"MEDICATIONS")
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| 66 | . ;
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| 67 | . ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP
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| 68 | . ;
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| 69 | . S RATTR=$$SETATTR(RIMDFN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS
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| 70 | . S @RIMBASE@("ATTR",RIMDFN)=RATTR ; SAVE THE ATRIBUTES FOR THIS PAT
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| 71 | . ;
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| 72 | . ; INCREMENT THE COUNT OF PATIENTS WITH THESE ATTRIBUTES IN ATTRTBL
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| 73 | . ;
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| 74 | . ; I '$D(@RIMBASE@("ATTRTBL",RATTR)) D ; IF FIRST PAT WITH THESE ATTRS
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| 75 | . ; . S @RIMBASE@("ATTRTBL",RATTR)=0 ; DEFAULT VALUE TO BE INCREMENTED
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| 76 | . ; S @RIMBASE@("ATTRTBL",RATTR)=@RIMBASE@("ATTRTBL",RATTR)+1 ; INCREMENT
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| 77 | . ;
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| 78 | . N CATNAME,CATTBL
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| 79 | . ; S CATBASE=$NA(@RIMBASE@("ANALYSIS"))
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| 80 | . S CATNAME=""
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| 81 | . D CPUSH(.CATNAME,RIMBASE,"RIMTBL",RIMDFN,RATTR) ; ADD TO CATEGORY
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| 82 | . W "CATEGORY NAME: ",CATNAME,!
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| 83 | . ;
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| 84 | . S RIMDFN=$O(^DPT(RIMDFN)) ; NEXT PATIENT
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| 85 | S @RIMBASE@("RESUME")=RIMDFN ; WHERE WE ARE LEAVING OFF THIS RUN
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| 86 | ; D PARY^GPLXPATH(@RIMBASE@("ATTRTBL"))
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| 87 | Q
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| 88 | ;
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| 89 | SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS
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| 90 | N SBASE,SATTR
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| 91 | S SBASE=$NA(@RIMBASE@("VARS",SDFN))
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| 92 | D APOST("SATTR","RIMTBL","HEADER")
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| 93 | I $D(@SBASE@("PROBLEMS",1)) D ;
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| 94 | . D APOST("SATTR","RIMTBL","PROBLEMS")
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| 95 | . W "POSTING PROBLEMS",!
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| 96 | I $D(@SBASE@("VITALS",1)) D APOST("SATTR","RIMTBL","VITALS")
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| 97 | I $D(@SBASE@("MEDS",1)) D APOST("SATTR","RIMTBL","MEDS")
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| 98 | D APOST("SATTR","RIMTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED
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| 99 | W "ATTRIBUTES: ",SATTR,!
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| 100 | Q SATTR
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| 101 | ;
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| 102 | RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL RIM TMP VALUES
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| 103 | K ^TMP("GPLRIM","RESUME")
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| 104 | K ^TMP("GPLRIM")
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| 105 | Q
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| 106 | ;
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| 107 | CLIST ; LIST THE CATEGORIES
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| 108 | ;
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| 109 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 110 | N CLBASE,CLNUM,ZI,CLIDX
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| 111 | S CLBASE=$NA(@RIMBASE@("RIMTBL","CATS"))
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| 112 | S CLNUM=@CLBASE@(0)
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| 113 | F ZI=1:1:CLNUM D ; LOOP THROUGH THE CATEGORIES
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| 114 | . S CLIDX=@CLBASE@(ZI)
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| 115 | . W "(",$P(@CLBASE@(CLIDX),"^",1)
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| 116 | . W ":",$P(@CLBASE@(CLIDX),"^",2),") "
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| 117 | . W CLIDX,!
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| 118 | ; D PARY^GPLXPATH(CLBASE)
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| 119 | Q
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| 120 | ;
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| 121 | CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES
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| 122 | ; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT
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| 123 | ; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE
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| 124 | ; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME
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| 125 | ; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES,
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| 126 | ; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X"
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| 127 | ; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES
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| 128 | ; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY
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| 129 | ; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING
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| 130 | ; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY
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| 131 | ; NUMBER IE CTBL_X(CDFN)=""
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| 132 | ;
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| 133 | ; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST
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| 134 | S CCTBL=$NA(@CBASE@(CTBL,"CATS"))
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| 135 | W "CBASE: ",CCTBL,!
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| 136 | ;
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| 137 | I '$D(@CCTBL@(CATTR)) D ; FIRST PATIENT IN THIS CATEGORY
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| 138 | . D PUSH^GPLXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY
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| 139 | . S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY
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| 140 | . S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT
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| 141 | . S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY
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| 142 | . ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME
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| 143 | . ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0
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| 144 | ;
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| 145 | S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY
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| 146 | S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT
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| 147 | S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK
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| 148 | ;
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| 149 | S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED
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| 150 | ;
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| 151 | S CPATLIST=$NA(@CBASE@(CTBL,"PATS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT
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| 152 | W "PATS BASE: ",CPATLIST,!
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| 153 | S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST
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| 154 | ;
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| 155 | Q
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| 156 | ;
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| 157 | CCOUNT ; RECOUNT THE CATEGORIES.. USE IN CASE OF RESTART OF ANALYZE
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| 158 | ;
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| 159 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 160 | N ZI,ZJ,ZCNT,ZIDX,ZCAT,ZATR,ZTOT
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| 161 | S ZCBASE=$NA(@RIMBASE@("RIMTBL","CATS")) ; BASE OF CATEGORIES
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| 162 | S ZPBASE=$NA(@RIMBASE@("RIMTBL","PATS")) ; BASE OF PATIENTS
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| 163 | S ZTOT=0 ; INITIALIZE OVERALL TOTAL
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| 164 | F ZI=1:1:@ZCBASE@(0) D ; FOR ALL CATS
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| 165 | . S ZCNT=0
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| 166 | . S ZATR=@ZCBASE@(ZI) ; THE ATTRIBUTE OF THE CATEGORY
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| 167 | . S ZCAT=$P(@ZCBASE@(ZATR),"^",1) ; USE IT TO LOOK UP THE CATEGORY NAME
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| 168 | . ; S ZIDX=$O(@ZPBASE@(ZCAT,"")) ; FIRST PATIENT IN LIST
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| 169 | . ; F ZJ=0:0 D Q:$O(@ZPBASE@(ZCAT,ZIDX))="" ; ALL PATIENTS IN THE LISTS
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| 170 | . ; . S ZCNT=ZCNT+1 ; INCREMENT THE COUNT
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| 171 | . ; . W ZCAT," DFN:",ZIDX," COUNT:",ZCNT,!
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| 172 | . ; . S ZIDX=$O(@ZPBASE@(ZCAT,ZIDX))
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| 173 | . S ZCNT=$$CNTLST($NA(@ZPBASE@(ZCAT)))
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| 174 | . S $P(@ZCBASE@(ZATR),"^",2)=ZCNT ; UPDATE THE COUNT IN THE CAT RECORD
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| 175 | . S ZTOT=ZTOT+ZCNT
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| 176 | W "TOTAL: ",ZTOT,!
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| 177 | Q
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| 178 | ;
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| 179 | CNTLST(INLST) ; RETURNS THE NUMBER OF ELEMENTS IN THE LIST
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| 180 | ; INLST IS PASSED BY NAME
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| 181 | N ZI,ZDX,ZCOUNT
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| 182 | W INLST,!
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| 183 | S ZCOUNT=0
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| 184 | S ZDX=""
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| 185 | F ZI=$O(@INLST@(ZDX)):0 D Q:$O(@INLST@(ZDX))="" ; LOOP UNTIL THE END
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| 186 | . S ZCOUNT=ZCOUNT+1
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| 187 | . S ZDX=$O(@INLST@(ZDX))
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| 188 | . W "ZDX:",ZDX," ZCNT:",ZCOUNT,!
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| 189 | Q ZCOUNT
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| 190 | ;
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| 191 | APUSH(AMAP,AVAL) ; ADD AVAL TO ATTRIBUTE MAP AMAP (AMAP PASSED BY NAME)
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| 192 | ; AMAP IS FORMED FOR ARRAY ACCESS: AMAP(0) IS THE COUNT
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| 193 | ; AND AMAP(N)=AVAL IS THE NTH AVAL
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| 194 | ; ALSO HASH ACCESS AMAP(AVAL)=N WHERE N IS THE ASSIGNED ORDER OF THE
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| 195 | ; MAP VALUE. INSTANCES OF THE MAP WILL USE $P(X,U,N)=AVAL TO PLACE
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| 196 | ; THE ATTRIBUTE IN ITS RIGHT PLACE. THE ATTRIBUTE VALUE IS STORED
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| 197 | ; SO THAT DIFFERENT MAPS CAN BE AUTOMATICALLY CROSSWALKED
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| 198 | ;
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| 199 | I '$D(@AMAP) D ; IF THE MAP DOES NOT EXIST
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| 200 | . S @AMAP@(0)=0 ; HAS ZERO ELEMENTS
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| 201 | S @AMAP@(0)=@AMAP@(0)+1 ;INCREMENT ELEMENT COUNT
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| 202 | S @AMAP@(@AMAP@(0))=AVAL ; ADD THE VALUE TO THE ARRAY
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| 203 | S @AMAP@(AVAL)=@AMAP@(0) ; ADD THE VALUE TO THE HASH WITH ARRAY REF
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| 204 | Q
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| 205 | ;
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| 206 | ASETUP ; SET UP GLOBALS AND VARS RIMBASE AND RIMTBL
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| 207 | I '$D(RIMBASE) S RIMBASE=$NA(^TMP("GPLRIM"))
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| 208 | I '$D(@RIMBASE) S @RIMBASE=""
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| 209 | I '$D(RIMTBL) S RIMTBL=$NA(^TMP("GPLRIM","RIMTBL","TABLE")) ; ATTR TABLE
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| 210 | S ^TMP("GPLRIM","TABLES","RIMTBL")=RIMTBL ; TABLE OF TABLES
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| 211 | Q
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| 212 | ;
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| 213 | AINIT ; INITIALIZE ATTRIBUTE TABLE
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| 214 | I '$D(RIMBASE) D ASETUP ; FOR COMMAND LINE CALLS
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| 215 | K @RIMTBL
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| 216 | D APUSH(RIMTBL,"EXTRACTED")
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| 217 | D APUSH(RIMTBL,"NOTEXTRACTED")
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| 218 | D APUSH(RIMTBL,"HEADER")
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| 219 | D APUSH(RIMTBL,"NOPCP")
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| 220 | D APUSH(RIMTBL,"PCP")
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| 221 | D APUSH(RIMTBL,"PROBLEMS")
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| 222 | D APUSH(RIMTBL,"PROBCODE")
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| 223 | D APUSH(RIMTBL,"PROBNOCODE")
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| 224 | D APUSH(RIMTBL,"PROBDATE")
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| 225 | D APUSH(RIMTBL,"PROBNODATE")
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| 226 | D APUSH(RIMTBL,"VITALS")
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| 227 | D APUSH(RIMTBL,"VITALSCODE")
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| 228 | D APUSH(RIMTBL,"VITALSNOCODE")
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| 229 | D APUSH(RIMTBL,"VITALSDATE")
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| 230 | D APUSH(RIMTBL,"VITALSNODATE")
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| 231 | D APUSH(RIMTBL,"MEDS")
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| 232 | D APUSH(RIMTBL,"MEDSCODE")
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| 233 | D APUSH(RIMTBL,"MEDSNOCODE")
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| 234 | D APUSH(RIMTBL,"MEDSDATE")
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| 235 | D APUSH(RIMTBL,"MEDSNODATE")
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| 236 | Q
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| 237 | ;
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| 238 | APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL
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| 239 | ; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING
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| 240 | ; PTBL IS THE NAME OF A TABLE IN @RIMBASE@("TABLES") - "RIMTBL"=ALL VALUES
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| 241 | ; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL))
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| 242 | I '$D(RIMBASE) D ASETUP ; FOR COMMANDLINE PROCESSING
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| 243 | N USETBL
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| 244 | I '$D(@RIMBASE@("TABLES",PTBL)) D Q ; NO TABLE
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| 245 | . W "ERROR NO SUCH TABLE",!
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| 246 | S USETBL=@RIMBASE@("TABLES",PTBL)
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| 247 | S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL
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| 248 | Q |
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