[1730] | 1 | C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM
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| 2 | ;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 10
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| 3 | ; (C) Sam Habiel 2016
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| 4 | ; See license for terms of use.
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| 5 | ;
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| 6 | W "No entry from top" Q
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| 7 | IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
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| 8 | I PATH="" QUIT
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| 9 | S RESTRICTED=$G(RESTRICTED,0)
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| 10 | S U="^"
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| 11 | N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
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| 12 | D SAB(PATH) ; Load restriction values into SAB. ; 176.006
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| 13 | JOB SAT^C0CRXNRD(PATH,RESTRICTED) ; 176.002
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| 14 | W "Jobbed off... "_$ZJOB_"."
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| 15 | D CONSO(PATH,RESTRICTED) ; 176.001,176.002
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| 16 | D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5
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| 17 | N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
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| 18 | W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
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| 19 | QUIT
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| 20 | ;
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| 21 | ; Everything is private from down on...
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| 22 | DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files
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| 23 | ; FN is Filenumber passed by Value
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| 24 | QUIT:$E(FN,1,3)'=176 ; Quit if not RxNorm files
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| 25 | N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root
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| 26 | N ZERO S ZERO=@ROOT@(0) ; Save zero node
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| 27 | S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited
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| 28 | K @ROOT ; Kill the file -- so sad!
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| 29 | S @ROOT@(0)=ZERO ; It riseth again!
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| 30 | QUIT
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| 31 | GETLINES(PATH,FILENAME) ; Get number of lines in a file
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| 32 | N POP
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| 33 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 34 | Q:POP
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| 35 | U IO
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| 36 | N I,LINE
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| 37 | F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
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| 38 | D CLOSE^%ZISH("FILE")
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| 39 | Q I-1
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| 40 | CONSO(PATH,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
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| 41 | ; PATH ByVal, path of RxNorm files
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| 42 | ; SABS ByRef, arrays of SABS(SAB)=restriction level
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| 43 | ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
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| 44 | N SABS D LOADSABS(.SABS)
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| 45 | I PATH="" QUIT
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| 46 | N FILENAME S FILENAME="RXNCONSO.RRF"
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| 47 | D DELFILED(176.001) ; delete data
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| 48 | N LINES S LINES=$$GETLINES(PATH,FILENAME)
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| 49 | N POP
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| 50 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 51 | IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
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| 52 | N C0CCOUNT
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| 53 | N C0CSUPP S C0CSUPP=0
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| 54 | F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH
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| 55 | . U IO
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| 56 | . N LINE R LINE:0
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| 57 | . IF $$STATUS^%ZISH QUIT
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| 58 | . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
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| 59 | . ;
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| 60 | . ; If suppressed, quit
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| 61 | . N SUPP S SUPP=$P(LINE,"|",17)
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| 62 | . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
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| 63 | . ;
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| 64 | . ; Deal with restriction level
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| 65 | . N SAB S SAB=$P(LINE,"|",12)
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| 66 | . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
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| 67 | . ;
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| 68 | . ; Save data
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| 69 | . S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
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| 70 | EX D CLOSE^%ZISH("FILE")
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| 71 | N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
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| 72 | W "Suppressed: ",C0CSUPP,!
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| 73 | QUIT
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| 74 | ;
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| 75 | ;
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| 76 | SAT(PATH,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
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| 77 | ; PATH ByVal, path of RxNorm files
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| 78 | ; SABS ByRef, arrays of SABS(SAB)=restriction level
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| 79 | ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
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| 80 | N $ET S $ET="D ^%ZTER HALT"
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| 81 | S U="^"
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| 82 | I PATH="" QUIT
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| 83 | N FILENAME S FILENAME="RXNSAT.RRF"
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| 84 | D DELFILED(176.002) ; delete data
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| 85 | N LINES S LINES=$$GETLINES(PATH,FILENAME)
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| 86 | N POP
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| 87 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 88 | IF POP W "Error reading file..., Please check...",! G EX2
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| 89 | N SABS D LOADSABS(.SABS)
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| 90 | N C0CSUPP S C0CSUPP=0
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| 91 | N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D
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| 92 | . U IO
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| 93 | . N LINE R LINE:0
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| 94 | . IF $$STATUS^%ZISH QUIT
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| 95 | . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
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| 96 | . ;
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| 97 | . ; If suppressed, quit
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| 98 | . N SUPP S SUPP=$P(LINE,"|",12)
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| 99 | . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
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| 100 | . ;
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| 101 | . ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
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| 102 | . N RXCUI1,ATN9
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| 103 | . S RXCUI1=$P(LINE,"|",1)
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| 104 | . S ATN9=$P(LINE,"|",9)
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| 105 | . S $P(LINE,"|",1)=ATN9
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| 106 | . S $P(LINE,"|",9)=RXCUI1
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| 107 | . ;
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| 108 | . ; Deal with restricted sources
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| 109 | . N SAB S SAB=$P(LINE,"|",10)
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| 110 | . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit
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| 111 | . ;
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| 112 | . ; Save off
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| 113 | . S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
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| 114 | EX2 D CLOSE^%ZISH("FILE")
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| 115 | N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
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| 116 | W "Suppressed: ",C0CSUPP,!
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| 117 | QUIT
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| 118 | ;
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| 119 | ;
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| 120 | SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
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| 121 | I PATH="" QUIT
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| 122 | N FILENAME S FILENAME="RXNSAB.RRF"
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| 123 | D DELFILED(176.003) ; delete data
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| 124 | N POP
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| 125 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 126 | IF POP W "Error reading file..., Please check...",! G EX3
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| 127 | N I F I=1:1 Q:$$STATUS^%ZISH D
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| 128 | . U IO
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| 129 | . N LINE R LINE:0
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| 130 | . IF $$STATUS^%ZISH QUIT
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| 131 | . U $P W I,! U IO ; Write I to the screen, then go back to reading the file
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| 132 | . ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field.
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| 133 | . N VCUI S VCUI=$P(LINE,"|",1)
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| 134 | . N RSAB S RSAB=$P(LINE,"|",4)
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| 135 | . S $P(LINE,"|",1)=RSAB
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| 136 | . S $P(LINE,"|",4)=VCUI
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| 137 | . S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
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| 138 | EX3 D CLOSE^%ZISH("FILE")
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| 139 | N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
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| 140 | QUIT
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| 141 | ;
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| 142 | LOADSABS(SABS) ;
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| 143 | N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D
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| 144 | . S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
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| 145 | QUIT
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| 146 | ;
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| 147 | STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
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| 148 | I PATH="" QUIT
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| 149 | N FILENAME S FILENAME="RXNSTY.RRF"
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| 150 | D DELFILED(176.004) ; delete data
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| 151 | N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
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| 152 | N POP
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| 153 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 154 | IF POP W "Error reading file..., Please check...",! G EX4
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| 155 | N I F I=1:1 Q:$$STATUS^%ZISH D
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| 156 | . U IO
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| 157 | . N LINE R LINE:0
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| 158 | . IF $$STATUS^%ZISH QUIT
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| 159 | . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
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| 160 | . S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^")
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| 161 | EX4 D CLOSE^%ZISH("FILE")
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| 162 | N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK
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| 163 | QUIT
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| 164 | ;
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| 165 | REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
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| 166 | I PATH="" QUIT
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| 167 | N FILENAME S FILENAME="RXNREL.RRF"
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| 168 | D DELFILED(176.005) ; delete data
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| 169 | N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
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| 170 | N POP
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| 171 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 172 | IF POP W "Error reading file..., Please check...",! G EX5
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| 173 | N C0CSUPP S C0CSUPP=0
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| 174 | N I F I=1:1 Q:$$STATUS^%ZISH D
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| 175 | . U IO
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| 176 | . N LINE R LINE:0
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| 177 | . ;
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| 178 | . ; If suppressed, quit
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| 179 | . N SUPP S SUPP=$P(LINE,"|",15)
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| 180 | . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
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| 181 | . ;
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| 182 | . IF $$STATUS^%ZISH QUIT
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| 183 | . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
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| 184 | . ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
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| 185 | . N RXCUI1 S RXCUI1=$P(LINE,"|",1)
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| 186 | . N SAB S SAB=$P(LINE,"|",11)
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| 187 | . S $P(LINE,"|",1)=SAB
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| 188 | . S $P(LINE,"|",11)=RXCUI1
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| 189 | . S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
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| 190 | EX5 D CLOSE^%ZISH("FILE")
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| 191 | N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
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| 192 | W "Suppressed: ",C0CSUPP,!
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| 193 | QUIT
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| 194 | DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
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| 195 | I PATH="" QUIT
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| 196 | N FILENAME S FILENAME="RXNDOC.RRF"
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| 197 | D DELFILED(176.006) ; delete data
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| 198 | N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
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| 199 | N POP
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| 200 | D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
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| 201 | IF POP W "Error reading file..., Please check...",! G EX6
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| 202 | N I F I=1:1 Q:$$STATUS^%ZISH D
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| 203 | . U IO
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| 204 | . N LINE R LINE:0
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| 205 | . IF $$STATUS^%ZISH QUIT
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| 206 | . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
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| 207 | . S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^")
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| 208 | EX6 D CLOSE^%ZISH("FILE")
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| 209 | N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK
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| 210 | QUIT
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