| 1 | #!/bin/bash/
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| 2 | #The following files must be in the same directory as the QRDA files being processed:
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| 3 | #MeasuresAndReportingParametersWithVariables.xml
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| 4 | #MEASURES-BY-PATIENT.txt
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| 5 | #This script
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| 6 |
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| 7 |
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| 8 | for MyFile in $(ls -1 /home/nancy/CCR-Template/QRDA/PAT_*_QRDA_V1_0_0-11-04-2010_21.xml);
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| 9 | do
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| 10 | StructuredBodyLine=$(grep -n "<structuredBody" "$MyFile" | awk -F: '{ print $1 }')
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| 11 | echo "structuredBody Line number is $StructuredBodyLine"
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| 12 | a="$(($StructuredBodyLine+2))"
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| 13 | b="$(($StructuredBodyLine+5))"
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| 14 | #In or for Saxon to do its work, the file it works on must be valid, so 3 sets of component/section tags were added to allow for those that will be replaced when the Measures and reporting parameters section is replaced in the file. They need to be deleted. The <MeasuresSection/> tag is added in the Header/Parameter document to anchor the replacement. IT will be deleted when the section is put into the file
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| 15 | echo "a is $a start line to delete for <components>/<section> pairs"
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| 16 | echo "b is $b end line to delete"
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| 17 | echo "$MyFile"
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| 18 | #We can either put this next line in after the fact or before. Currently it is before
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| 19 | #sed -in '/structuredBody/{ s/$/\n<MeasuresSection\/>/ }' "$MyFile"
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| 20 | #sed -in "$c"s/<MeasuresSection\/>//p "$MyFile"
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| 21 | #MS=$(cat MeasuresAndReportingParametersWithVariables.xml)
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| 22 | sed -in "$a","$b"d "$MyFile"
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| 23 | #insert the contents of this file after the structured body line
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| 24 | sed -in '/MeasuresSection/r MeasuresAndReportingParametersWithVariables.xml' "$MyFile"
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| 25 | sed -in s/\<MeasuresSection\\/\>// "$MyFile"
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| 26 | done
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| 27 |
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| 28 |
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| 29 | rm -rf /home/nancy/CCR-Template/QRDA/PAT*.xmln
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| 30 |
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| 31 | NewFunction()
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| 32 | {
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| 33 | File="PAT_$1_QRDA_V1_0_0-11-04-2010_21.xml"
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| 34 | shift
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| 35 | while [ "0" != "$#" ]
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| 36 | do
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| 37 | echo "Now I am in the function"
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| 38 | echo "$File"
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| 39 | echo "$1"
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| 40 | sed -in "s/<!--@@@$1-Tpl@@@//" "$File"
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| 41 | sed -in "s/<!--@@@$1-Item@@@//" "$File"
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| 42 | sed -in "s/<!--@@@$1-Act@@@//" "$File"
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| 43 | sed -in "s/<!--@@@M-Set2011@@@//" "$File"
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| 44 | sed -in "s/@@@@$1-Tpl@@@@-->//" "$File"
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| 45 | sed -in "s/@@@@$1-Item@@@@-->//" "$File"
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| 46 | sed -in "s/@@@@$1-Act@@@@-->//" "$File"
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| 47 | sed -in "s/@@@@M-Set2011@@@@-->//" "$File"
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| 48 | sed -in "s/<!--@@@M-Param2011@@@//" "$File"
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| 49 | sed -in "s/@@@@M-Param2011@@@@//" "$File"
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| 50 |
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| 51 | shift
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| 52 | done
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| 53 | }
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| 54 |
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| 55 | while read Line ;
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| 56 | do
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| 57 | echo "$Line"
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| 58 |
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| 59 | NewFunction $Line
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| 60 | done < "MEASURES-BY-PATIENT.txt"
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| 61 |
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| 62 | rm -rf /home/nancy/CCR-Template/QRDA/PAT*.xmln
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