| 1 | TMGNDF2B ;TMG/kst/FDA Import: Ensure DRUG INGREDIENTS ;03/25/06
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| 2 | ;;1.0;TMG-LIB;**1**;11/21/06
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| 3 |
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| 4 | ;" FDA - NATIONAL DRUG FILES COMPILING FUNCTIONS
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| 5 | ;" -- FILLING DRUG INGREDIENTS FILE WITH NEW VALUES
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| 6 | ;"Kevin Toppenberg MD
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| 7 | ;"GNU General Public License (GPL) applies
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| 8 | ;"11-21-2006
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| 9 |
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| 10 | ;"=======================================================================
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| 11 | ;" API -- Public Functions.
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| 12 | ;"=======================================================================
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| 13 | ;"Menu -- Provide menu to entry points of main routines
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| 14 | ;"=======================================================================
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| 15 | ;"CheckIngredients -- To cycle through ingredients and ensure that there is an extry in the
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| 16 | ;" DRUG INGREDIENTS file. This has to be an interactive process.
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| 17 |
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| 18 | ;"=======================================================================
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| 19 | ;" Private Functions.
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| 20 | ;"=======================================================================
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| 21 | ;"ShowInstructions
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| 22 | ;"LookupRx(ingredient)
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| 23 | ;"ShowMatches(Array,max,Label)
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| 24 | ;"AddRangeMatch(ScanArray,Label,StartN,EndN)
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| 25 | ;"AddMatch(ScanArray,Label,number)
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| 26 | ;"ULRangeMatch(ScanArray,StartN,EndN)
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| 27 | ;"ULMatch(ScanArray,number)
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| 28 | ;"AddOneIngredient(Name)
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| 29 | ;"FindIgdMatch(Name,Interactive)
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| 30 | ;"DoAddIgd(Name,ParentIEN)
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| 31 |
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| 32 | ;"=======================================================================
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| 33 | ;"=======================================================================
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| 34 | Menu
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| 35 | ;"Purpose: Provide menu to entry points of main routines
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| 36 |
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| 37 | new Menu,UsrSlct
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| 38 | set Menu(0)="Pick Option for Checking Import Ingredients (0C)"
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| 39 | set Menu(1)="Check for NEW ingredients to ADD."_$char(9)_"CheckIngredients"
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| 40 | set Menu("P")="Prev Stage"_$char(9)_"Prev"
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| 41 | set Menu("N")="Next Stage"_$char(9)_"Next"
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| 42 |
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| 43 | MC1 write #
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| 44 | set UsrSlct=$$Menu^TMGUSRIF(.Menu,"^")
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| 45 | if UsrSlct="^" goto MCDone
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| 46 | if UsrSlct=0 set UsrSlct=""
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| 47 |
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| 48 | if UsrSlct="CheckIngredients" do CheckIngredients goto MC1
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| 49 | if UsrSlct="Prev" goto Menu^TMGNDF0B ;"quit can occur from there...
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| 50 | if UsrSlct="Next" goto Menu^TMGNDF1A ;"quit can occur from there...
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| 51 | goto MC1
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| 52 |
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| 53 | MCDone
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| 54 | quit
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| 55 |
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| 56 |
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| 57 | CheckIngredients
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| 58 | ;"Purpose: To cycle through ingredients and ensure that there is an extry in the
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| 59 | ;" DRUG INGREDIENTS file. This has to be an interactive process.
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| 60 | ;"Input: none
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| 61 | ;"Results: none
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| 62 | ;"Note: if record in 22706.9 (TMG FDA IMPORT COMPILED) for a given listing
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| 63 | ;" has been marked for SKIPPING, or DONE ADDING, then listing will be skipped.
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| 64 |
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| 65 | new Answers,index,ingredient
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| 66 | write "Collecting list of INGREDIENTS that need to be added to database...",!
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| 67 | new count set count=1
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| 68 | new MissingArray
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| 69 |
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| 70 | new Itr,IEN
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| 71 | new abort set abort=0
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| 72 | set index=$$ItrInit^TMGITR(22706.4,.Itr)
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| 73 | do PrepProgress^TMGITR(.Itr,20,0,"index")
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| 74 | if index'="" for do quit:(+$$ItrNext^TMGITR(.Itr,.index)'>0)!abort
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| 75 | . if $$UserAborted^TMGUSRIF set abort=1 quit
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| 76 | . new listingIEN set listingIEN=+$piece($get(^TMG(22706.4,index,0)),"^",1) ;"Not required...
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| 77 | . if (listingIEN>0),$piece($get(^TMG(22706.9,listingIEN,1)),"^",4)=1 quit ;"1=SKIP
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| 78 | . set ingredient=$piece($get(^TMG(22706.4,index,0)),"^",4)
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| 79 | . set ingredient=$extract(ingredient,1,64)
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| 80 | . if $get(Answers(ingredient))="" do
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| 81 | . . set Y=$$LookupRx(ingredient)
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| 82 | . . if +Y'>0 set MissingArray(ingredient)=""
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| 83 | . . if +Y>0 set Answers(ingredient)=+Y
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| 84 | do ProgressDone^TMGITR(.Itr)
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| 85 |
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| 86 | do HandleMissing(.MissingArray)
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| 87 | quit
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| 88 |
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| 89 |
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| 90 | Check1(IEN) ;"finish later
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| 91 | ;"Purpose: to scan the ingredients for 1 entry in 22706.9
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| 92 | ;"Input: IEN -- IEN in 22706.9
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| 93 |
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| 94 | new ingredient
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| 95 | new MissingArray
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| 96 |
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| 97 | new fdaIEN,Y
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| 98 | set fdaIEN=+$piece($get(^TMG(22706.9,IEN,0)),"^",1)
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| 99 | set ingredient=$piece($get(^TMG(22706.4,fdaIEN,0)),"^",4)
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| 100 | set ingredient=$extract(ingredient,1,64)
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| 101 | set Y=$$LookupRx(ingredient)
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| 102 | if +Y'>0 do
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| 103 | . set MissingArray(ingredient)=""
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| 104 | . do HandleMissing(.MissingArray)
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| 105 | quit
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| 106 |
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| 107 |
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| 108 | HandleMissing(MissingArray)
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| 109 | ;"Purpose: To handle and process the array of missing ingredients
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| 110 | ;"Input: MissingArray(ingredient)=""
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| 111 | ;" MissingArray(ingredient)=""
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| 112 | ;"Result: none
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| 113 |
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| 114 | new max set max=$$ListCt^TMGMISC("MissingArray")
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| 115 | write !,"Found ",max," missing INGREDIENTS.",!
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| 116 |
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| 117 | new ScanArray,count
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| 118 | write "Summarizing list...",!
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| 119 | set count=1
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| 120 | set ingredient=""
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| 121 | new startTime set startTime=$H
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| 122 | new abort set abort=0
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| 123 | for set ingredient=$order(MissingArray(ingredient)) quit:(ingredient="")!abort do
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| 124 | . if count#10=1 do ProgressBar^TMGUSRIF(count,ingredient,1,max,80,startTime)
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| 125 | . if ingredient["ALLERGENIC EXTRACT" do
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| 126 | . . set Y=$$DoAddIgd(ingredient,0)
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| 127 | . else do
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| 128 | . . set Y=$$FindIgdMatch(ingredient,0)
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| 129 | . . if +Y>0 set ScanArray("MATCHED",count,ingredient)=Y
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| 130 | . . else set ScanArray("UNMATCHED",count,ingredient)=""
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| 131 | . set count=count+1
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| 132 | . set abort=$$UserAborted^TMGUSRIF
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| 133 | write !
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| 134 |
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| 135 | new done set done=0
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| 136 | new input set input="R"
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| 137 | new displaySet set displaySet="MATCHED"
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| 138 | for do quit:(done=1)
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| 139 | . if input="R" do
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| 140 | . . write !!,"Now pick which potential matches are ",displaySet,!
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| 141 | . . do ShowMatches(.ScanArray,max,displaySet)
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| 142 | . write " (R to refresh, C custom handle, UL to UnLink)",!
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| 143 | . write " (# or #-#, ^ to continue, ? for instructions, "
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| 144 | . if displaySet="MATCHED" write "U show Unmatched)",!
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| 145 | . else write "M show Matched)",!
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| 146 | . write "Enter number(s) to ACCEPT (or codes listed above): ?//"
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| 147 | . read input,!
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| 148 | . if input="" set input="?"
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| 149 | . set input=$$UP^XLFSTR(input)
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| 150 | . if input="^" set done=1
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| 151 | . if (input="U") do
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| 152 | . . set displaySet="UNMATCHED"
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| 153 | . . set input="R"
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| 154 | . if (input="M") do
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| 155 | . . set displaySet="MATCHED"
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| 156 | . . set input="R"
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| 157 | . if (input="A") do
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| 158 | . . set displaySet="MATCHED"
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| 159 | . . set input="R"
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| 160 | . if (input="?") do
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| 161 | . . do ShowInstructions
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| 162 | . . set input="R"
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| 163 | . if +input=input do
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| 164 | . . do AddMatch(.ScanArray,displaySet,+input)
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| 165 | . . set input="R"
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| 166 | . if input["-" do
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| 167 | . . new N1,N2
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| 168 | . . set N1=$piece(input,"-",1)
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| 169 | . . set N2=$piece(input,"-",2)
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| 170 | . . do AddRangeMatch(.ScanArray,displaySet,N1,N2)
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| 171 | . . set input="R"
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| 172 | . if input="C" do
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| 173 | . . read "Enter number for Custom Handling: ",input,!
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| 174 | . . if +input'=input quit
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| 175 | . . set ingredient=$order(ScanArray(displaySet,+input,""))
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| 176 | . . set Y=$$AddOneIngredient(ingredient)
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| 177 | . . if +Y>0 kill ScanArray(displaySet,+input,ingredient)
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| 178 | . . set input="R"
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| 179 | . if input="UL" do
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| 180 | . . read "Enter number to Unlink (# or #-#): ",input,!
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| 181 | . . if +input=input do
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| 182 | . . . do ULMatch(.ScanArray,input)
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| 183 | . . else if input["-" do
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| 184 | . . . new N1,N2
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| 185 | . . . set N1=$piece(input,"-",1)
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| 186 | . . . set N2=$piece(input,"-",2)
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| 187 | . . . do ULRangeMatch(.ScanArray,N1,N2)
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| 188 | . . set input="R"
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| 189 |
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| 190 | quit
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| 191 |
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| 192 |
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| 193 | ShowInstructions
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| 194 | write !!,"INSTRUCTIONS:",!
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| 195 | write "----------------------------------------------------------------------------",!
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| 196 | write "Before adding any medicines or drugs into the database, the underlying",!
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| 197 | write "INGREDIENTS must be entered. Each drug will have one or more ingredients",!
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| 198 | write "that will be linked to these new entries. DRUG INTERACTIONS are based on",!
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| 199 | write "ingredients rather than on the name of the drug itself.",!!
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| 200 | write "Often, the name supplied is more specific than an entry already in the",!
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| 201 | write "database. For example:",!
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| 202 | write " CAFFEINE <-- already in database",!
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| 203 | write " CAFFEINE CITRATE <-- new import",!
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| 204 | write "Clearly, these two compounds are related, and it could be said that:",!
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| 205 | write "CAFFEINE is the PRIMARY INGREDIENT in CAFFEINE CITRATE, or as will be",!
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| 206 | write "seen shortly, summarized like this:",!
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| 207 | write "CAFFEINE <-- CAFFEINE CITRATE",!!
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| 208 | do PressToCont^TMGUSRIF
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| 209 | write "What follows next will be a listing of all the ingredients to be added into",!
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| 210 | write "the database. The computer will have made a best guess at linking the new",!
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| 211 | write "entries to parent compounds (i.e. PRIMARY INGREDIENTS). But not all of these",!
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| 212 | write "guesses will be correct. IT IS YOUR JOB TO SCREEN THESE.",!!
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| 213 | write "If a linkage or matching is correct, just type in its number to ACCEPT it.",!
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| 214 | write "If a linkage or matching is NOT correct, it shoud be UNLINKED.",!
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| 215 | write "If you feel you can search for a better match, attempt a CUSTOM handling.",!!
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| 216 | write "When you are done with accepting or rejecting the computers matches, you should",!
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| 217 | write "then process all the UNMATCHED entries, by selecting 'U' to show UNMATCHED.",!
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| 218 | write "These very likely may all be accepted at once by entering a range number (e.g.",!
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| 219 | write "1-1000).",!!
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| 220 | write "When you have completed processing all the matched and unmatched entries, enter",!
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| 221 | write "^ to continue.",!
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| 222 |
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| 223 | new temp
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| 224 | read "Press <ENTER> to continue.",temp:$get(DTIME,3600),!
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| 225 | quit
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| 226 |
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| 227 |
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| 228 | LookupRx(ingredient)
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| 229 | ;"Purpose: To look up ingredient in the DRUG INGREDIENTS file
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| 230 | ;"Input: ingredient -- the name of the ingredient to lookup
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| 231 | ;"Result: -1 if not fount, or 1234^ingredientname format
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| 232 |
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| 233 | new DIC,X,Y
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| 234 | set DIC=50.416
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| 235 | set DIC(0)="M"
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| 236 | new TMGROOT,TMGMSG
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| 237 |
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| 238 | set Y=-1
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| 239 | do FIND^DIC(50.416,,".01E","M",ingredient,"*",,,,"TMGROOT","TMGMSG")
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| 240 | if +$get(TMGROOT("DILIST",0))>0 do
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| 241 | . set Y=$get(TMGROOT("DILIST",2,1),-1)_"^"_$get(TMGROOT("DILIST",1,1))
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| 242 | . if +Y'>0 do
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| 243 | . . set X=ingredient
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| 244 | . . do ^DIC
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| 245 |
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| 246 | quit Y
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| 247 |
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| 248 |
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| 249 | ShowMatches(Array,max,Label)
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| 250 | new count,ingredient,value
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| 251 | new someShown set someShown=0
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| 252 | for count=1:1:max do
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| 253 | . set ingredient=$order(ScanArray(Label,count,""))
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| 254 | . if ingredient="" quit
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| 255 | . set someShown=1
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| 256 | . set value=$get(ScanArray(Label,count,ingredient))
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| 257 | . write " ",count,". "
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| 258 | . if +value>0 write $piece(value,"^",2)
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| 259 | . else write "(no parent ingredient)"
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| 260 | . write " <--child of-- ",ingredient,!
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| 261 | if someShown=0 do
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| 262 | . write " --- (List is Empty) ---",!
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| 263 |
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| 264 | quit
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| 265 |
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| 266 | AddRangeMatch(ScanArray,Label,StartN,EndN)
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| 267 | new num
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| 268 | for num=StartN:1:EndN do
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| 269 | . do AddMatch(.ScanArray,Label,num)
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| 270 | quit
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| 271 |
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| 272 | AddMatch(ScanArray,Label,number)
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| 273 | new ingredient,Y
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| 274 | set ingredient=$order(ScanArray(Label,number,""))
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| 275 | set Y=$get(ScanArray(Label,number,ingredient))
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| 276 | if (ingredient'="") do
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| 277 | . set Y=$$DoAddIgd(ingredient,Y)
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| 278 | . kill ScanArray(Label,number,ingredient)
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| 279 | quit
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| 280 |
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| 281 | ULRangeMatch(ScanArray,StartN,EndN)
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| 282 | new num
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| 283 | for num=StartN:1:EndN do
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| 284 | . do ULMatch(.ScanArray,num)
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| 285 | quit
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| 286 |
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| 287 | ULMatch(ScanArray,number)
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| 288 | new ingredient,Y
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| 289 | set ingredient=$order(ScanArray("MATCHED",number,""))
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| 290 | if (ingredient'="") set ScanArray("UNMATCHED",number,ingredient)=""
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| 291 | kill ScanArray("MATCHED",number)
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| 292 | quit
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| 293 |
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| 294 |
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| 295 | AddOneIngredient(Name)
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| 296 | ;"Purpose: To add ingredient name to the DRUG INGREDIENTS -- will try to find a parent
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| 297 | ;" ingredient interactively
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| 298 | ;"Input: Name -- the name of the ingredient to be added.
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| 299 | ;"Output: DRUG INGREDIENTS file will have records added.
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| 300 | ;"Results: Will return record number (IEN) of newly added record, or 0 if error
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| 301 | ;"Note: This function assumes that the ingredient does not already exist in the file.
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| 302 |
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| 303 | new result set result=0
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| 304 | if $get(Name)="" goto AOIDone
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| 305 |
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| 306 | new Y
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| 307 | set Y=$$FindIgdMatch(Name,1)
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| 308 |
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| 309 | new % set %=1 ;"1=YES
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| 310 | if +Y'>0 do
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| 311 | . write "A parent primary ingredient was not found for ",!
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| 312 | . write " ",Name," <-- UNMATCHED COMPOUND (Add Now)",!
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| 313 | . write "Add Now? "
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| 314 | . do YN^DICN ;"returns result in %
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| 315 | . write !
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| 316 |
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| 317 | if %=1 do
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| 318 | . set result=$$DoAddIgd(Name,Y)
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| 319 |
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| 320 | AOIDone
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| 321 | quit result
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| 322 |
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| 323 |
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| 324 | FindIgdMatch(Name,Interactive)
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| 325 | ;"Purpose: To find a match for Name from DRUG INGREDIENTS
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| 326 | ;"Input: Name -- the name of the ingredient to be added.
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| 327 | ;" Interactive -- OPTIONAL, default=1
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| 328 | ;" if 1 then user is asked question,
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| 329 | ;" if 0 then best guess is returned.
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| 330 | ;"Results: -1 if not found
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| 331 | ;" or 1234^Name
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| 332 |
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| 333 | if $get(Name)="" goto FMDone
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| 334 |
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| 335 | set Interactive=$get(Interactive,1)
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| 336 |
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| 337 | if Interactive do
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| 338 | . write "------------------------------------------",!
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| 339 | . write "Looking for a parent, PRIMARY INGREDIENT for: ",!
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| 340 | . write " ",Name," <-- UNMATCHED COMPOUND",!
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| 341 |
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| 342 | new DIC,X,Y,%
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| 343 | set DIC=50.416
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| 344 | set DIC(0)="M"
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| 345 |
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| 346 | new parent set parent=$$Substitute^TMGSTUTL(Name,", "," ")
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| 347 | set parent=$translate(parent,","," ")
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| 348 | for do quit:(+Y>0)!(parent="")
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| 349 | . new temp
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| 350 | . set temp=$$ParseLast^TMGMISC(parent,.parent," ") ;"cut last word off from drug name
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| 351 | . set X=$$Trim^TMGSTUTL(parent)
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| 352 | . do ^DIC
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| 353 | . if Interactive'=1 quit
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| 354 | . if +Y>0 do
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| 355 | . . ;"At this point, we either have possible match (+Y>0), or no match (parent="")
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| 356 | . . write " '"_$piece(Y,"^",2)_"' <-- ?? MATCH ??",!
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| 357 | . . write "Use this as the PRIMARY INGREDIENT? "
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| 358 | . . set %=1 ;"1=YES
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| 359 | . . do YN^DICN ;"returns result in %
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| 360 | . . write !
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| 361 | . . if %'=1 set Y=0
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| 362 | . else do
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| 363 | . . if X'="" write " ",X," <-- (not found).",!
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| 364 |
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| 365 | if (+Y'>0)&(Interactive) do
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| 366 | . write " No match found. Let's try a generic lookup..."
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| 367 | . set DIC(0)="AEQM"
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| 368 | . set DIC("A")=" LOOKUP: Enter PRIMARY INGREDIENT (or ^ to continue) ^// "
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| 369 | . do ^DIC
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| 370 | . write !
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| 371 |
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| 372 | FMDone
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| 373 | quit Y
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| 374 |
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| 375 |
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| 376 | DoAddIgd(Name,ParentIEN)
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| 377 | ;"Purpose: to do the actual addition to the DRUG INGREDIENTS file
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| 378 | ;"Input: Name -- the string of the drug name
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| 379 | ;" ParentIEN -- a value as returned from DIC (i.e. 1234^Name)
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| 380 | ;"Results: IEN of added value, or 0 if not added.
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| 381 |
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| 382 | new result set result=0
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| 383 | new TMGFDA,TMGIEN,TMGMSG
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| 384 | new PrimIngred set PrimIngred=$get(ParentIEN)
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| 385 | set TMGFDA(50.416,"+1,",.01)=$extract(Name,1,64)
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| 386 | if +PrimIngred>0 set TMGFDA(50.416,"+1,",2)=$piece(PrimIngred,"^",1)
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| 387 | new temp set temp=$get(DUZ(0))
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| 388 | set DUZ(0)="^" ;"needed for file permission
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| 389 | new tempLaygo merge tempLaygo=^DD(50.416,.01,"LAYGO")
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| 390 | kill ^DD(50.416,.01,"LAYGO") ;"temporarily remove lock-down
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| 391 | do UPDATE^DIE("","TMGFDA","TMGIEN","TMGMSG")
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| 392 | set DUZ(0)=temp
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| 393 | merge ^DD(50.416,.01,"LAYGO")=tempLaygo
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| 394 | if $data(TMGMSG)&(+$get(Quiet)=0) do
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| 395 | . new PriorErrorFound
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| 396 | . do ShowDIERR^TMGDEBUG(.TMGMSG,.PriorErrorFound)
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| 397 | set result=$get(TMGIEN(1))
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| 398 |
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| 399 | quit result
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| 400 |
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