| [1595] | 1 | C0PALGY2 ; ERX/GPL/SMH - eRx Allergy utilities ; 5/8/12 11:52pm
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| 2 | ;;1.0;C0P;;Apr 25, 2012;Build 103
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| 3 | ;Copyright 2009 George Lilly. Licensed under the terms of the GNU
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| 4 | ;General Public License See attached copy of the License.
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| 5 | ;
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| 6 | ;This program is free software; you can redistribute it and/or modify
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| 7 | ;it under the terms of the GNU General Public License as published by
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| 8 | ;the Free Software Foundation; either version 2 of the License, or
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| 9 | ;(at your option) any later version.
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| 10 | ;
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| 11 | ;This program is distributed in the hope that it will be useful,
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| 12 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 13 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 14 | ;GNU General Public License for more details.
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| 15 | ;
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| 16 | ;You should have received a copy of the GNU General Public License along
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| 17 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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| 18 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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| 19 | ;
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| 20 | Q
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| 21 | ;
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| 22 | ; THESE ROUTINES ARE USED TO TEST AND VALIDATE THE USE OF THE RXNORM
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| 23 | ; DATABASE FOR LOOKING UP IDS AND MATCHING FIRST DATA BANK IDS TO
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| 24 | ; RXNORM CONCEPT IDS AND THEN FROM RXNORM CONCEPT IDS TO VISTA VUIDS
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| 25 | ; THE PARTICULAR INTEREST HERE IS FOR MATCHING ALLERGIES TO A MEDICATION
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| 26 | ; IN ADDITION THERE ARE ROUTINES HERE TO POPULATE THE C0P FDB ALLERGIES
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| 27 | ; FILE.
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| 28 | ; NONE OF THESE ROUTINES ARE USED IN REGULAR ERX ACTIVITIES. THEY
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| 29 | ; ARE BROUGHT FORWARD AS PART OF THE ERX PACKAGE FOR DEBUGGING AND
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| 30 | ; FUTURE DEVELOPMENT
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| 31 | ; GPL JUN 2010
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| 32 | TESTBASE ; TEST LOOKING UP CONCEPT IDS IN RXNORM
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| 33 | ;
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| 34 | N ZI
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| 35 | S ZI=""
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| 36 | S (COUNT,FOUND)=0
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| 37 | F S ZI=$O(^C0PALGY("TYPE","BASE",ZI)) Q:ZI="" D ; FOR EACH BASE CONCEPT
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| 38 | . S COUNT=COUNT+1
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| 39 | . S ZJ=$$GET1^DIQ(113059005,ZI_",",1,"E")
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| 40 | . S ZN=$$GET1^DIQ(113059005,ZI_",",.01,"E")
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| 41 | . S ZV=$$BASE^C0PALGY1(ZJ) ;LOOKUP VISTA MATCH
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| 42 | . I ZV'="" S FOUND=FOUND+1
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| 43 | . W !,ZJ," ",ZN," :: ",ZV
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| 44 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 45 | Q
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| 46 | ;
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| 47 | TESTNAME ; TEST LOOKING UP CONCEPT IDS IN RXNORM
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| 48 | ;
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| 49 | N ZI
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| 50 | S ZI=""
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| 51 | S (COUNT,FOUND)=0
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| 52 | F S ZI=$O(^C0PALGY("TYPE","NAME",ZI)) Q:ZI="" D ; FOR EACH BASE CONCEPT
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| 53 | . S COUNT=COUNT+1
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| 54 | . S ZJ=$$GET1^DIQ(113059005,ZI_",",1,"E")
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| 55 | . S ZN=$$GET1^DIQ(113059005,ZI_",",.01,"E")
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| 56 | . S ZV=$$NAME^C0PALGY1($$UP^XLFSTR(ZN)) ;LOOKUP VISTA MATCH
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| 57 | . I ZV'="" S FOUND=FOUND+1
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| 58 | . W !,ZJ," ",ZN," :: ",ZV
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| 59 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 60 | Q
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| 61 | ;
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| 62 | TEST3 ;
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| 63 | ;
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| 64 | S ZI=0
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| 65 | S (COUNT,FOUND)=0
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| 66 | F S ZI=$O(^PSNDF(50.6,ZI)) Q:+ZI=0 D ; FOR EVERY DRUG IN THE NDF
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| 67 | . S COUNT=COUNT+1
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| 68 | . S ZJ=$G(^PSNDF(50.6,ZI,"VUID")) ;VUID
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| 69 | . S ZJ=$P(ZJ,"^",1) ;JUST THE FIRST PIECE
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| 70 | . S ZJN=$G(^PSNDF(50.6,ZI,0)) ; VA NAME
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| 71 | . W !,ZJN," ",ZJ
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| 72 | . S ZK=$$NDDFBAS2^C0PLKUP(ZJ)
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| 73 | . I ZK'=0 D ; FDB CONCEPT ID FOUND
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| 74 | . . S ZL=$O(^C0PALGY("C2","BASE",ZK,""))
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| 75 | . . S ZN=$$GET1^DIQ(113059005,ZL_",",.01,"E")
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| 76 | . . I ZN'="" D ;
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| 77 | . . . S FOUND=FOUND+1
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| 78 | . . . S ZP=ZI_";PSNDF(50.6,"
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| 79 | . . . S C0PFDA(113059005,ZL_",",6)=ZP
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| 80 | . . . D UPDIE
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| 81 | . . W $C(9),ZI," ",ZJ," :: ",ZK," ",ZN
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| 82 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 83 | Q
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| 84 | ;
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| 85 | TEST4 ;
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| 86 | ;
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| 87 | S ZI=0
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| 88 | S (COUNT,FOUND)=0
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| 89 | F S ZI=$O(^PS(50.416,ZI)) Q:+ZI=0 D ; DRUG INGREDIENTS FILE
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| 90 | . S COUNT=COUNT+1
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| 91 | . S ZJ=$G(^PS(50.416,ZI,"VUID")) ;VUID
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| 92 | . S ZJ=$P(ZJ,"^",1) ;JUST THE FIRST PIECE
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| 93 | . S ZJN=$G(^PS(50.416,ZI,0)) ; VA NAME
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| 94 | . W !,ZJN," ",ZJ
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| 95 | . S ZK=$$NDDFBAS2^C0PLKUP(ZJ)
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| 96 | . ;I ZI=3912 B
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| 97 | . I ZK'=0 D ; FDB CONCEPT ID FOUND
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| 98 | . . S ZL=$O(^C0PALGY("C2","BASE",ZK,""))
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| 99 | . . S ZN=$$GET1^DIQ(113059005,ZL_",",.01,"E")
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| 100 | . . I ZN'="" D ;
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| 101 | . . . S FOUND=FOUND+1
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| 102 | . . . W $C(9),ZI," ",ZJ," :: ",ZK," ",ZN
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| 103 | . . . S ZP=ZI_";PS(50.416,"
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| 104 | . . . S C0PFDA(113059005,ZL_",",6)=ZP
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| 105 | . . . D UPDIE
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| 106 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 107 | Q
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| 108 | ;
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| 109 | TEST5 ; VA PRODUCT FILE
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| 110 | ;
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| 111 | S ZI=0
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| 112 | S (COUNT,FOUND)=0
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| 113 | F S ZI=$O(^PSNDF(50.68,ZI)) Q:+ZI=0 D ; FOR EVERY DRUG IN THE NDF
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| 114 | . S COUNT=COUNT+1
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| 115 | . S ZJ=$G(^PSNDF(50.68,ZI,"VUID")) ;VUID
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| 116 | . S ZJ=$P(ZJ,"^",1) ;JUST THE FIRST PIECE
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| 117 | . S ZJN=$G(^PSNDF(50.68,ZI,0)) ; VA NAME
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| 118 | . ;W !,ZJN," ",ZJ
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| 119 | . S ZK=$$NDDFBAS2^C0PLKUP(ZJ)
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| 120 | . I ZK'=0 D ; FDB CONCEPT ID FOUND
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| 121 | . . S ZL=$O(^C0PALGY("C2","NAME",ZK,""))
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| 122 | . . S ZN=$$GET1^DIQ(113059005,ZL_",",.01,"E")
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| 123 | . . I ZN'="" D ;
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| 124 | . . . S FOUND=FOUND+1
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| 125 | . . . S ZP=ZI_";PSNDF(50.68,"
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| 126 | . . . S C0PFDA(113059005,ZL_",",6)=ZP
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| 127 | . . . D UPDIE
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| 128 | . . W !,ZJN," ",ZJ
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| 129 | . . W $C(9),ZI," ",ZJ," :: ",ZK," ",ZN
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| 130 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 131 | Q
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| 132 | ;
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| 133 | TEST6 ; CHECK ALL VUIDS IN VA PRODUCT FILE AGAINST RXNORM CONCEPT FILE
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| 134 | ;
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| 135 | S ZI=0
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| 136 | S (COUNT,FOUND)=0
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| 137 | F S ZI=$O(^PSNDF(50.68,ZI)) Q:+ZI=0 D ; FOR EVERY DRUG IN THE NDF
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| 138 | . S COUNT=COUNT+1
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| 139 | . S ZJ=$G(^PSNDF(50.68,ZI,"VUID")) ;VUID
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| 140 | . S ZJ=$P(ZJ,"^",1) ;JUST THE FIRST PIECE
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| 141 | . S ZJN=$G(^PSNDF(50.68,ZI,0)) ; VA NAME
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| 142 | . ;W !,ZJN," ",ZJ
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| 143 | . S ZRXN=$O(^C0P("RXN","VUID",ZJ,""))
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| 144 | . I ZRXN'="" S FOUND=FOUND+1
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| 145 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 146 | Q
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| 147 | ;
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| 148 | TEST7 ; CHECK ALL CONCEPT IDS IN THE FDB ALLERGY FILE AGAINST THE
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| 149 | ;RXNORM CONCEPT FILE - THIS APPOACH DOESN'T WORK.
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| 150 | ;
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| 151 | S ZI=0
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| 152 | S (COUNT,FOUND)=0
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| 153 | F S ZI=$O(^C0PALGY("C",ZI)) Q:+ZI=0 D ; EVERY FDB ALLERGY CONCEPT
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| 154 | . S ZIN=$$GET1^DIQ(113059005,ZI_",",.01) ;NAME OF CONCEPT
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| 155 | . S ZJ=$O(^C0P("RXN","B",ZI,"")) ; RXNORM CONCEPT FIELD IS .01
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| 156 | . S COUNT=COUNT+1
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| 157 | . I ZJ'="" D ; FOUND
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| 158 | . . S FOUND=FOUND+1
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| 159 | . . S ZJN=$G(^C0P("RXN",ZJ,1,1,0)) ;NAME OF CONCEPT
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| 160 | . . ;S ZJNNN=$$GET1^DIQ(1130590011.101,ZJ_",",,ZJN)
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| 161 | . . I ZIN'="" W !,ZI,ZIN," :: ",ZJ," ",ZJN
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| 162 | W !,"COUNT:",COUNT," FOUND:",FOUND
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| 163 | Q
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| 164 | ;
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| 165 | TESTC ; PRINT OUT DUPLICATES IN THE FROM THE C INDEX OF THE ALLERGY FILE
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| 166 | ;
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| 167 | S (COUNT,COUNT2)=0
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| 168 | S ZI=""
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| 169 | F S ZI=$O(^C0PALGY("C",ZI)) Q:ZI="" D ;
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| 170 | . S ZJ=$O(^C0PALGY("C",ZI,"")) ;IEN
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| 171 | . I $O(^C0PALGY("C",ZI,ZJ))'="" D ;
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| 172 | . . S ZZ=""
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| 173 | . . F S ZZ=$O(^C0PALGY("C",ZI,ZZ)) Q:ZZ="" D ;
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| 174 | . . . S COUNT=COUNT+1
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| 175 | . . . S ZK=$$GET1^DIQ(113059005,ZZ_",",6)
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| 176 | . . . S ZL=$$GET1^DIQ(113059005,ZZ_",",.01)
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| 177 | . . . S ZT=$$GET1^DIQ(113059005,ZZ_",",2)
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| 178 | . . . I ZK'="" S COUNT2=COUNT2+1
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| 179 | . . . S DUPS(ZI,ZL,ZT)=ZK
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| 180 | . . . W !,ZK," ",ZI
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| 181 | Q
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| 182 | ;
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| 183 | COUNT ; COUNT THE NUMBER OF MAPPINGS IN VA POINTER INDEX OF FDB ALLERGIES
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| 184 | ;
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| 185 | N ZI,ZJ,COUNT
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| 186 | S COUNT=0
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| 187 | S ZI="" S ZJ=""
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| 188 | F S ZI=$O(^C0PALGY("VA",ZI)) Q:ZI="" D ;
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| 189 | . S ZJ=""
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| 190 | . F S ZJ=$O(^C0PALGY("VA",ZI,ZJ)) Q:ZJ="" D ;
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| 191 | . . S COUNT=COUNT+1
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| 192 | W !,"COUNT: ",COUNT,!
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| 193 | Q
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| 194 | ;
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| 195 | CHECK ; CHECK ALL ALLERGIES IN THE PATIENT ALLERGY FILE FOR MATCHES IN
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| 196 | ; THE FDB ALLERGY FILE
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| 197 | N ZI,ZJ,COUNT
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| 198 | S (ZI,ZJ)=0 S COUNT=0 S COUNT2=0
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| 199 | F S ZI=$O(^GMR(120.8,ZI)) Q:+ZI=0 D ; FOR EACH ENTRY
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| 200 | . S ZJ=^GMR(120.8,ZI,0) ; ZERO NODE
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| 201 | . S PAT=$P(ZJ,U,1) ;PATIENT
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| 202 | . S ZN=$P(ZJ,U,2) ;REACTANT NAME
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| 203 | . S GMR=$P(ZJ,U,3) ;POINTER
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| 204 | . S COUNT=COUNT+1
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| 205 | . S FOUND=$O(^C0PALGY("VA",GMR,"")) ; VA POINTER INDEX
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| 206 | . S ZF=""
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| 207 | . I FOUND'="" D ;
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| 208 | . . S COUNT2=COUNT2+1
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| 209 | . . S ZF=$$GET1^DIQ(113059005,FOUND_",",.01,"E")
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| 210 | . W !,"PAT:",PAT," ",ZN," ",GMR," :: ",FOUND," ",ZF
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| 211 | W !,"COUNT:",COUNT," FOUND:",COUNT2
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| 212 | Q
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| 213 | ;
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| 214 | LOADRXN ; LOAD THE FDB TO RXNORM CSV FILE INTO ^TMP
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| 215 | ; THE FILE NAME IS CompositeAllergyID2RxCui.csv
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| 216 | ; AND IT IS STORED IN /home/dev
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| 217 | N ZG
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| 218 | S ZG=$NA(^TMP("C0PALGY","RXNCSV",1))
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| 219 | W $$FTG^%ZISH("/home/dev/","CompositeAllergyID2RxCui.csv",ZG,3) ;INCREMENT
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| 220 | ; 3rd NODE
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| 221 | Q
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| 222 | ;
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| 223 | ADDRXN ; ADD THE CompositeAllergyID to rxcui mapping to the
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| 224 | ; C0P FDB ALLERGY file
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| 225 | ; the csv file with the mapping has been loaded into
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| 226 | ; ^TMP("C0PALGY","RXNCSV") - see LOADRXN routine above
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| 227 | N ZI,ZJ,ZARY,ZF,C0PFDA
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| 228 | S ZF=113059005 ; FILE NUMBER FOR C0P FDB ALLERGY FILE
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| 229 | S ZARY=$NA(^TMP("C0PALGY","RXNCSV"))
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| 230 | S ZJ=$O(@ZARY@(""),-1) ; NUMBER OF ROWS IN THE ARRAY
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| 231 | F ZI=2:1:ZJ D ; SKIP ROW 1, WHICH HAS THE COLUMN NAMES
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| 232 | . N ZFDA,ZRXN,ZROW
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| 233 | . K C0PFDA
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| 234 | . S ZROW=@ZARY@(ZI) ; EACH ROW IS ""X"",""Y""
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| 235 | . S ZFDA=$P(ZROW,",",1) ; CompositeAllergyID
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| 236 | . S ZFDA=$TR(ZFDA,"""") ; GET RID OF EXTRA QUOTES
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| 237 | . S ZRXN=$P(ZROW,",",2) ; rxcui
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| 238 | . S ZRXN=$TR(ZRXN,"""") ; GET RID OF EXTRA QUOTES
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| 239 | . W !,ZFDA," ",ZRXN
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| 240 | . S ZOHONE=$$GET1^DIQ(ZF,ZFDA_",",.01)
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| 241 | . S C0PFDA(ZF,ZFDA_",",.01)=ZOHONE
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| 242 | . S C0PFDA(ZF,ZFDA_",",7)=ZRXN ; SET rxcui for ien ZFDA
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| 243 | . D UPDIE
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| 244 | Q
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| 245 | ;
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| 246 | LOOKRXN ; LOOK UP RXCUI VALUES IN THE RXNORM CONCEPT FILE
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| 247 | ;
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| 248 | S COUNT=0 S FOUND=0
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| 249 | S ZI=""
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| 250 | F S ZI=$O(^C0PALGY("RXCUI",ZI)) Q:ZI="" D ;
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| 251 | . S COUNT=COUNT+1
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| 252 | . S ZJ=$O(^C0P("RXN","B",ZI,"")) ;
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| 253 | . W !,ZI," ",ZJ
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| 254 | W !,COUNT," FOUND"
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| 255 | Q
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| 256 | ;
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| 257 | LOOKFDB ;LOOK UP FDB NUMBERS IN THE RXNORM FILE
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| 258 | ;
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| 259 | S ZI=""
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| 260 | F S ZI=$O(^C0PALGY("C",ZI)) Q:ZI="" D ;
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| 261 | . S ZJ=$O(^C0PALGY("C",ZI,""))
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| 262 | . W !,ZI," ",ZJ
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| 263 | Q
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| 264 | ;
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| 265 | MKRNF ; CREATING AN RNF FILE FOR THE FDB ALLERGY TABLE
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| 266 | ;
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| 267 | F ZI=1:1:999999 F ZJ=1:1:7 D ;
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| 268 | . I ZJ=1 S ^GRNF("V",ZI,$O(^GRNF("F",ZJ,"")))=ZI
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| 269 | . S ZK=$P(^GPLFDB(ZI),""",""",ZJ)
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| 270 | . S ZK=$TR(ZK,"""")
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| 271 | . I ZJ=6 D ;STATUS
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| 272 | . . I (ZK'="A")&(ZK'="I") D ERROR^C0PMAIN(",U113059009,",$ST($ST,"PLACE"),"ERX-INVALID-DATA","Invalid Data") QUIT
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| 273 | . I ZK'="" D ;
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| 274 | . . S ^GRNF("V",ZI,$O(^GRNF("F",ZJ,"")))=ZK
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| 275 | Q
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| 276 | ;
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| 277 | FILEFDB ;POPULATE C0P FDB ALLERGIES FROM RNF STRUCTURE IN ^GRNF
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| 278 | ;
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| 279 | F ZI=1:1:999999 D ;
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| 280 | . K C0PFDA
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| 281 | . S C0PFDA(113059005,"?+1,",.01)=^GRNF("V",ZI,"Description")
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| 282 | . S C0PFDA(113059005,"?+1,",.05)=$G(^GRNF("V",ZI,"CompositeAllergyID"))
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| 283 | . S C0PFDA(113059005,"?+1,",1)=^GRNF("V",ZI,"ConceptID")
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| 284 | . S C0PFDA(113059005,"?+1,",2)=^GRNF("V",ZI,"ConceptType")
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| 285 | . S C0PFDA(113059005,"?+1,",3)=^GRNF("V",ZI,"Source")
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| 286 | . S C0PFDA(113059005,"?+1,",4)=^GRNF("V",ZI,"Status")
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| 287 | . S C0PFDA(113059005,"?+1,",5)=^GRNF("V",ZI,"TouchDate")
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| 288 | . ;ZWR C0PFDA
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| 289 | . ;B
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| 290 | . D UPDIE
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| 291 | Q
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| 292 | ;
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| 293 | UPDIE ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
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| 294 | K ZERR
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| 295 | D CLEAN^DILF
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| 296 | D UPDATE^DIE("","C0PFDA","","ZERR")
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| 297 | I $D(ZERR) D ERROR^C0PMAIN(",U113059008,",$ST($ST,"PLACE"),"ERX-UPDIE-FAIL","Fileman Data Update Failure") QUIT
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| 298 | K C0PFDA
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| 299 | Q
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