| 1 | C0XMAIN ; GPL - Fileman Triples entry point routine ;10/13/11 17:05
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| 2 | ;;0.1;C0X;nopatch;noreleasedate;Build 1
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| 3 | ;Copyright 2011 George Lilly. Licensed under the terms of the GNU
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| 4 | ;General Public License See attached copy of the License.
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| 5 | ;
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| 6 | ;This program is free software; you can redistribute it and/or modify
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| 7 | ;it under the terms of the GNU General Public License as published by
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| 8 | ;the Free Software Foundation; either version 2 of the License, or
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| 9 | ;(at your option) any later version.
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| 10 | ;
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| 11 | ;This program is distributed in the hope that it will be useful,
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| 12 | ;but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 13 | ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 14 | ;GNU General Public License for more details.
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| 15 | ;
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| 16 | ;You should have received a copy of the GNU General Public License along
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| 17 | ;with this program; if not, write to the Free Software Foundation, Inc.,
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| 18 | ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
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| 19 | ;
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| 20 | Q
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| 21 | ;
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| 22 | INITFARY(ZFARY) ; INITIALIZE FILE NUMBERS AND OTHER USEFUL THINGS
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| 23 | ; FOR THE DEFAULT TRIPLE STORE. USE OTHER VALUES FOR SUPPORTING ADDITIONAL
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| 24 | ; TRIPLE STORES
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| 25 | S @ZFARY@("C0XTFN")=172.101 ; TRIPLES FILE NUMBER
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| 26 | S @ZFARY@("C0XSFN")=172.201 ; TRIPLES STRINGS FILE NUMBER
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| 27 | S @ZFARY@("C0XTN")=$NA(^C0X(101)) ; TRIPLES GLOBAL NAME
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| 28 | S @ZFARY@("C0XSN")=$NA(^C0X(201)) ; STRING FILE GLOBAL NAME
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| 29 | S @ZFARY@("C0XDIR")="/home/glilly/all_smart_patient_data/smart-rdf/"
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| 30 | D USEFARY(ZFARY)
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| 31 | Q
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| 32 | ;
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| 33 | USEFARY(ZFARY) ; INITIALIZES VARIABLES SAVED IN ARRAY ZFARY
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| 34 | N ZI S ZI=""
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| 35 | F S ZI=$O(@ZFARY@(ZI)) Q:ZI="" D
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| 36 | . ;N ZX
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| 37 | . S ZX="S "_ZI_"="""_@ZFARY@(ZI)_""""
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| 38 | . ;W !,ZX
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| 39 | . X ZX
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| 40 | Q
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| 41 | ;
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| 42 | IMPORT(FNAME,FDIR,FURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD
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| 43 | ; DIRECTORY, LOADS IT INTO THE TRIPLESTORE AS TEXT, AND RETURNS THE
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| 44 | ; NODE NAME OF THE TEXT TRIPLE
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| 45 | ; FDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR)
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| 46 | ; FURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE
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| 47 | ; FARY IS THE OPTIONAL FILE ARRAY OF THE TRIPLE STORE TO USE
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| 48 | I '$D(FARY) D ;
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| 49 | . D INITFARY("C0XFARY")
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| 50 | . S FARY="C0XFARY"
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| 51 | D USEFARY(FARY)
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| 52 | N ZD,ZTMP
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| 53 | I '$D(FDIR) S FDIR=C0XDIR ; DIRECTORY OF THE RDF FILE
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| 54 | I '$D(FURL) D ;
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| 55 | . N ZN2 S ZN2=$TR(FNAME,".","_") ; REMOVE THE DOT FROM THE NAME
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| 56 | . S FURL=FDIR_ZN2
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| 57 | N ZTMP
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| 58 | S ZTMP=$NA(^TMP("C0X",$J,"FILEIN",1)) ; WHERE TO PUT THE INCOMING FILE
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| 59 | K @ZTMP ; MAKE SURE IT'S CLEAR
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| 60 | S C0XSTART=$$NOW^XLFDT
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| 61 | W !,"STARTED: ",C0XSTART
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| 62 | W !,"READING IN: ",FNAME
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| 63 | I '$$FILEIN(ZTMP,FDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS
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| 64 | . W !,"ERROR READING FILE: ",FDIR,FNAME
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| 65 | S ZRDF=$NA(^TMP("C0X",$J,"FILEIN")) ; WITHOUT THE SUBSCRIPT
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| 66 | W !,$O(@ZRDF@(""),-1)," LINES READ"
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| 67 | D INSRDF(ZRDF,FURL,FARY) ; IMPORT AND PROCESS THE RDF
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| 68 | Q
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| 69 | ;
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| 70 | WGET(ZURL,FARY) ; GET FROM THE INTERNET AN RDF FILE AND INSERT IT
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| 71 | ;
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| 72 | I '$D(FARY) D ;
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| 73 | . D INITFARY("C0XFARY")
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| 74 | . S FARY="C0XFARY"
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| 75 | D USEFARY(FARY)
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| 76 | ;N ZLOC,ZTMP
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| 77 | K ZTMP
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| 78 | S ZLOC=$NA(^TMP("C0X","WGET",$J))
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| 79 | K @ZLOC
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| 80 | S C0XSTART=$$NOW^XLFDT
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| 81 | W !,"STARTED: ",C0XSTART
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| 82 | W !,"DOWNLOADING: ",ZURL
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| 83 | S OK=$$httpGET^%zewdGTM(ZURL,.ZTMP)
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| 84 | M @ZLOC=ZTMP
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| 85 | S C0XLINES=$O(@ZLOC@(""),-1)
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| 86 | W !,C0XLINES," LINES READ"
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| 87 | S C0XDLC=$$NOW^XLFDT ; DOWNLOAD COMPLETE
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| 88 | W !,"DOWNLOAD COMPLETE AT ",C0XDLC
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| 89 | S C0XDIFF=$$FMDIFF^XLFDT(C0XDLC,C0XSTART,2)
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| 90 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
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| 91 | I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XLINES/C0XDIFF,".")," LINES PER SEC"
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| 92 | D INSRDF(ZLOC,ZURL,FARY)
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| 93 | Q
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| 94 | ;
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| 95 | INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS
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| 96 | ; ZRDF IS PASSED BY NAME
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| 97 | I '$D(FARY) D ;
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| 98 | . D INITFARY("C0XFARY")
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| 99 | . S FARY="C0XFARY"
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| 100 | D USEFARY(FARY)
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| 101 | N ZGRAPH,ZSUBJECT
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| 102 | S ZGRAPH="_:G"_$$LKY9 ; RANDOM GRAPH NAME
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| 103 | S ZSUBJECT=$$ANONS ; RANDOM ANOYMOUS SUBJECT
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| 104 | D ADD(ZGRAPH,ZSUBJECT,"fmts:url",ZNAME,FARY)
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| 105 | N ZTXTNM
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| 106 | S ZTXTNM="_TXT_INCOMING_RDF_FILE_"_ZNAME_"_"_$$LKY9 ; NAME FOR TEXT NODE
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| 107 | D ADD(ZGRAPH,ZSUBJECT,"fmts:rdfSource",ZTXTNM,FARY)
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| 108 | D UPDIE(.C0XFDA) ; TRY IT OUT
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| 109 | K C0XCNT ;RESET FOR NEXT TIME
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| 110 | D STORETXT(ZRDF,ZTXTNM,FARY)
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| 111 | W !,"ADDED: ",ZGRAPH," ",ZSUBJECT," fmts:rdfSource ",ZTXTNM
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| 112 | D PROCESS2(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF
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| 113 | Q
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| 114 | ;
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| 115 | STORETXT(ZTXT,ZNAME,FARY) ; STORE TEXT IN THE TRIPLESTORE AT ZNAME
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| 116 | ;
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| 117 | I '$D(FARY) D ;
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| 118 | . D INITFARY("C0XFARY")
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| 119 | . S FARY="C0XFARY"
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| 120 | D USEFARY(FARY)
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| 121 | N ZIEN
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| 122 | S ZIEN=$$IENOF(ZNAME,FARY) ; GET THE IEN
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| 123 | D CLEAN^DILF
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| 124 | K ZERR
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| 125 | D WP^DIE(C0XSFN,ZIEN_",",1,,ZTXT,"ZERR")
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| 126 | I $D(ZERR) D ;
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| 127 | . ZWR ZERR
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| 128 | Q
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| 129 | ;
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| 130 | GETTXT(ZRTN,ZNAME,FARY) ; RETURNS RDF SOURCE OR OTHER TEXT
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| 131 | ; ZRTN IS PASSED BY REFERENCE
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| 132 | I '$D(FARY) D ;
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| 133 | . D INITFARY("C0XFARY")
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| 134 | . S FARY="C0XFARY"
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| 135 | D USEFARY(FARY)
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| 136 | N ZIEN
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| 137 | S ZIEN=$$IENOF(ZNAME)
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| 138 | S OK=$$GET1^DIQ(C0XSFN,ZIEN_",",1,,"ZRTN")
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| 139 | Q
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| 140 | ;
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| 141 | WHERETXT(ZNAME,FARY) ; EXTRINSIC WHICH RETURNS THE NAME OF THE GLOBAL
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| 142 | ; WHERE THE TEXT IS LOCATED. NAME IS THE NAME OF THE STRING
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| 143 | I '$D(FARY) D ;
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| 144 | . D INITFARY("C0XFARY")
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| 145 | . S FARY="C0XFARY"
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| 146 | D USEFARY(FARY)
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| 147 | N ZIEN
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| 148 | S ZIEN=$$IENOF(ZNAME)
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| 149 | Q $NA(@C0XSN@(ZIEN,1))
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| 150 | ;
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| 151 | FILEIN(ZINTMP,ZDIR,ZFNAME,ZLVL) ; READS A FILE INTO ZINTMP USING FTG^%ZISH
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| 152 | ; ZINTMP IS PASSED BY NAME AND INCLUDES THE NEW SUBSCRIPT
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| 153 | ; IE ^TMP("C0X","FILEIN",1)
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| 154 | ; ZLVL IN THIS CASE WOULD BE 3 INCREMENTING THE 1
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| 155 | ; EXTRINSIC WHICH RETURNS THE RESULT OF FTG^%ZISH
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| 156 | S OK=$$FTG^%ZISH(ZDIR,FNAME,ZINTMP,ZLVL)
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| 157 | Q OK
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| 158 | ;
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| 159 | TESTPROC ; TEST PROCESS WITH EXISTING SMALL RDF FILE
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| 160 | S ZIN=$NA(^TMP("C0X",12226,"FILEIN"))
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| 161 | S ZGRAPH="/test/rdfFile"
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| 162 | S ZM="/test/rdfFile/meta"
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| 163 | D PROCESS(.G,ZIN,ZGRAPH,ZM)
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| 164 | Q
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| 165 | ;
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| 166 | PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
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| 167 | ; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
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| 168 | ; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
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| 169 | ; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
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| 170 | ; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
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| 171 | ;
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| 172 | I '$D(FARY) D ;
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| 173 | . D INITFARY("C0XFARY")
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| 174 | . S FARY="C0XFARY"
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| 175 | D USEFARY(FARY)
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| 176 | ; -- first parse the rdf file with the MXML parser
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| 177 | ;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
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| 178 | S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
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| 179 | ; -- assign the MXLM dom global name to ZDOM
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| 180 | S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
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| 181 | W !,$O(@ZDOM@(""),-1)," XML NODES PARSED"
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| 182 | ; -- populate the metagraph to point to the graph with status unfinished
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| 183 | S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
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| 184 | I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
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| 185 | D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
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| 186 | D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
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| 187 | ;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
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| 188 | S C0XDATE=$$NOW^XLFDT
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| 189 | D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
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| 190 | D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
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| 191 | ; --
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| 192 | ; -- pull out the vocabularies in the RDF statement. marked with xmlns:
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| 193 | ; -- put them in a local variable for quick reference
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| 194 | ; -- TODO: create a graph for vocabularies and validate incoming against it
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| 195 | ;
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| 196 | S C0XVOC=""
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| 197 | N ZI,ZJ,ZK S ZI=""
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| 198 | F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
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| 199 | . S ZVOC=$P(ZI,"xmlns:",2)
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| 200 | . I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
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| 201 | ;W !,"VOCABS:" ZWR C0XVOC
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| 202 | ;
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| 203 | ; -- look for children called rdf:Description. quit if none. not an rdf file
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| 204 | ;
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| 205 | S ZI=$O(@ZDOM@(1,"C",""))
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| 206 | I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
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| 207 | . W !,"Error. Not an RDF file. Cannot process."
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| 208 | ;
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| 209 | ; -- now process the rdf description children
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| 210 | ;
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| 211 | S ZI=""
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| 212 | S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
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| 213 | F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
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| 214 | . ; -- we are skipping any child that is not rdf:Description
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| 215 | . ; -- TODO: check to see if this is right in general
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| 216 | . ;
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| 217 | . IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
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| 218 | . . W !,"SKIPPING NODE: ",ZI
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| 219 | . ; -- now looking for the subject for the triples
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| 220 | . S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
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| 221 | . I ZX'="" D ; we have the subject
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| 222 | . . ;W " about: ",ZX
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| 223 | . . S C0XSUB=ZX
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| 224 | . E D ;
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| 225 | . . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
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| 226 | . . I ZX'="" D ;
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| 227 | . . . S C0XSUB=ZX
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| 228 | . I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
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| 229 | . ;
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| 230 | . ; -- we now have the subject. the children of this node have the rest
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| 231 | . ;
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| 232 | . S ZJ="" ; for the children of the rdf:Description nodes
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| 233 | . F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
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| 234 | . . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
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| 235 | . . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
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| 236 | . . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
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| 237 | . . I C0XPRE[":" D ; expand using vocabulary
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| 238 | . . . N ZB,ZA
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| 239 | . . . S ZB=$P(C0XPRE,":",1)
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| 240 | . . . S ZA=$P(C0XPRE,":",2)
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| 241 | . . . I $G(C0XVOC(ZB))'="" D ;
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| 242 | . . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
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| 243 | . . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
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| 244 | . . I ZY'="" D Q ;
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| 245 | . . . S C0XOBJ=ZY ; object
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| 246 | . . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
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| 247 | . . ; -- this is an else because of the quit above
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| 248 | . . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
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| 249 | . . I ZX'="" D Q ; got one
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| 250 | . . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
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| 251 | . . . ; without change... this could be foolish .. look at it again later
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| 252 | . . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
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| 253 | . . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
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| 254 | . . I C0XOBJ="" D Q ; not a happy situation
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| 255 | . . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
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| 256 | . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
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| 257 | W !,"INSERTING ",C0XCNT," TRIPLES"
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| 258 | D UPDIE(.C0XFDA) ; commit the updates to the file
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| 259 | ; next, mark the graph as finished
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| 260 | S C0XEND=$$NOW^XLFDT
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| 261 | W !," ENDED AT: ",C0XEND
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| 262 | S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
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| 263 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
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| 264 | I C0XDIFF'=0 D ;
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| 265 | . W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
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| 266 | Q
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| 267 | ;
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| 268 | PROCESS2(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE
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| 269 | ; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING
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| 270 | ; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE
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| 271 | ; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS
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| 272 | ; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA
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| 273 | ;
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| 274 | I '$D(FARY) D ;
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| 275 | . D INITFARY("C0XFARY")
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| 276 | . S FARY="C0XFARY"
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| 277 | D USEFARY(FARY)
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| 278 | ;N BATCNT
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| 279 | ;N BATMAX
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| 280 | S BATCNT=0 ; BATCH COUNTER
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| 281 | S BATMAX=10000 ; TRY BATCHES OF THIS SIZE
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| 282 | ; -- first parse the rdf file with the MXML parser
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| 283 | ;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML
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| 284 | S C0XDLC2=$$NOW^XLFDT ; START OF PARSE
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| 285 | S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W")
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| 286 | ; -- assign the MXLM dom global name to ZDOM
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| 287 | S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID))
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| 288 | S C0XNODE=$O(@ZDOM@(""),-1)
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| 289 | W !,C0XNODE," XML NODES PARSED"
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| 290 | S C0XPRS=$$NOW^XLFDT ; PARSE COMPLETE
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| 291 | W !,"PARSE COMPLETE AT ",C0XPRS
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| 292 | S C0XDIFF=$$FMDIFF^XLFDT(C0XPRS,C0XDLC2,2)
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| 293 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
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| 294 | I C0XDIFF'=0 D ;
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| 295 | . W !," APPROXIMATELY ",$P(C0XNODE/C0XDIFF,".")," NODES PER SECOND"
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| 296 | ; -- populate the metagraph to point to the graph with status unfinished
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| 297 | S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT
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| 298 | I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH
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| 299 | D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH
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| 300 | D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished
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| 301 | ;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT")
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| 302 | S C0XDATE=$$NOW^XLFDT
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| 303 | D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY)
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| 304 | D UPDIE(.C0XFDA) ; commit the metagraph changes to the triple store
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| 305 | ; --
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| 306 | ; -- pull out the vocabularies in the RDF statement. marked with xmlns:
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| 307 | ; -- put them in a local variable for quick reference
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| 308 | ; -- TODO: create a graph for vocabularies and validate incoming against it
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| 309 | ;
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| 310 | S C0XVOC=""
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| 311 | N ZI,ZJ,ZK S ZI=""
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| 312 | F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns
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| 313 | . S ZVOC=$P(ZI,"xmlns:",2)
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| 314 | . I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI))
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| 315 | ;W !,"VOCABS:" ZWR C0XVOC
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| 316 | ;
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| 317 | ; -- look for children called rdf:Description. quit if none. not an rdf file
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| 318 | ;
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| 319 | S ZI=$O(@ZDOM@(1,"C",""))
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| 320 | I $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ; not an rdf file
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| 321 | . W !,"Error. Not an RDF file. Cannot process."
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| 322 | ;
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| 323 | ; -- now process the rdf description children
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| 324 | ;
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| 325 | S ZI=""
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| 326 | S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate
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| 327 | F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ;
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| 328 | . ; -- we are skipping any child that is not rdf:Description
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| 329 | . ; -- TODO: check to see if this is right in general
|
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| 330 | . ;
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| 331 | . IF $G(@ZDOM@(1,"C",ZI))'="rdf:Description" D Q ;
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| 332 | . . W !,"SKIPPING NODE: ",ZI
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| 333 | . ; -- now looking for the subject for the triples
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| 334 | . S ZX=$G(@ZDOM@(ZI,"A","rdf:about"))
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| 335 | . I ZX'="" D ; we have the subject
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| 336 | . . ;W " about: ",ZX
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| 337 | . . S C0XSUB=ZX
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| 338 | . E D ;
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| 339 | . . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject
|
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| 340 | . . I ZX'="" D ;
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| 341 | . . . S C0XSUB=ZX
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| 342 | . I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT
|
|---|
| 343 | . ;
|
|---|
| 344 | . ; -- we now have the subject. the children of this node have the rest
|
|---|
| 345 | . ;
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| 346 | . S ZJ="" ; for the children of the rdf:Description nodes
|
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| 347 | . F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child
|
|---|
| 348 | . . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix
|
|---|
| 349 | . . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space
|
|---|
| 350 | . . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix
|
|---|
| 351 | . . I C0XPRE[":" D ; expand using vocabulary
|
|---|
| 352 | . . . N ZB,ZA
|
|---|
| 353 | . . . S ZB=$P(C0XPRE,":",1)
|
|---|
| 354 | . . . S ZA=$P(C0XPRE,":",2)
|
|---|
| 355 | . . . I $G(C0XVOC(ZB))'="" D ;
|
|---|
| 356 | . . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded
|
|---|
| 357 | . . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object
|
|---|
| 358 | . . I ZY'="" D Q ;
|
|---|
| 359 | . . . S C0XOBJ=ZY ; object
|
|---|
| 360 | . . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple
|
|---|
| 361 | . . ; -- this is an else because of the quit above
|
|---|
| 362 | . . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object
|
|---|
| 363 | . . I ZX'="" D Q ; got one
|
|---|
| 364 | . . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject
|
|---|
| 365 | . . . ; without change... this could be foolish .. look at it again later
|
|---|
| 366 | . . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
|
|---|
| 367 | . . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here
|
|---|
| 368 | . . I C0XOBJ="" D Q ; not a happy situation
|
|---|
| 369 | . . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ
|
|---|
| 370 | . . D ADD2(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node
|
|---|
| 371 | S C0XTRP=$$NOW^XLFDT ; PARSE COMPLETE
|
|---|
| 372 | W !,"TRIPLES COMPLETE AT ",C0XTRP
|
|---|
| 373 | S C0XDIFF=$$FMDIFF^XLFDT(C0XTRP,C0XPRS,2)
|
|---|
| 374 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
|
|---|
| 375 | I C0XDIFF'=0 D ;
|
|---|
| 376 | . W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
|
|---|
| 377 | W !,"INSERTING ",C0XCNT," TRIPLES"
|
|---|
| 378 | I $D(C0XFDA) D UPDIE(.C0XFDA) ; commit the updates to the file
|
|---|
| 379 | ; next, mark the graph as finished
|
|---|
| 380 | S C0XINS=$$NOW^XLFDT ; PARSE COMPLETE
|
|---|
| 381 | W !,"INSERTION COMPLETE AT ",C0XPRS
|
|---|
| 382 | S C0XDIFF=$$FMDIFF^XLFDT(C0XINS,C0XTRP,2)
|
|---|
| 383 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
|
|---|
| 384 | W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," NODES PER SECOND"
|
|---|
| 385 | S C0XEND=$$NOW^XLFDT
|
|---|
| 386 | W !," ENDED AT: ",C0XEND
|
|---|
| 387 | S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2)
|
|---|
| 388 | W !," ELAPSED TIME: ",C0XDIFF," SECONDS"
|
|---|
| 389 | W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND"
|
|---|
| 390 | Q
|
|---|
| 391 | ;
|
|---|
| 392 | SHOW(ZN) ;
|
|---|
| 393 | ZWR ^TMP("MXMLDOM",$J,1,ZN,*)
|
|---|
| 394 | Q
|
|---|
| 395 | ;
|
|---|
| 396 | ANONS() ; RETURNS AN ANONOMOUS SUBJECT
|
|---|
| 397 | Q "_S:"_$$LKY9
|
|---|
| 398 | ;
|
|---|
| 399 | NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED
|
|---|
| 400 | ; THEN CREATES A NEW GRAPH AND POINTS THE METAGRAPH TO IT
|
|---|
| 401 | ; NGRAPH AND NMETA ARE PASSED BY REFERENCE AND ARE THE RETURN
|
|---|
| 402 | S NGRAPH="G"_$$LKY9
|
|---|
| 403 | S NMETA=NGRAPH_"A"
|
|---|
| 404 | Q
|
|---|
| 405 | ;
|
|---|
| 406 | ADD(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
|
|---|
| 407 | ; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
|
|---|
| 408 | I '$D(FARY) D ;
|
|---|
| 409 | . D INITFARY("C0XFARY")
|
|---|
| 410 | . S FARY="C0XFARY"
|
|---|
| 411 | D USEFARY(FARY)
|
|---|
| 412 | I '$D(C0XCNT) S C0XCNT=0
|
|---|
| 413 | N ZNODE
|
|---|
| 414 | S ZNODE="N"_$$LKY17
|
|---|
| 415 | N ZNARY ; GET READY TO CALL IENOFA
|
|---|
| 416 | S ZNARY("ZG",ZG)=""
|
|---|
| 417 | S ZNARY("ZS",ZS)=""
|
|---|
| 418 | S ZNARY("ZP",ZP)=""
|
|---|
| 419 | S ZNARY("ZO",ZO)=""
|
|---|
| 420 | D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
|
|---|
| 421 | ;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
|
|---|
| 422 | ;S ZSIEN=$$IENOF(ZS)
|
|---|
| 423 | ;S ZPIEN=$$IENOF(ZP)
|
|---|
| 424 | ;S ZOIEN=$$IENOF(ZO)
|
|---|
| 425 | ;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
|
|---|
| 426 | S C0XCNT=C0XCNT+1
|
|---|
| 427 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
|
|---|
| 428 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
|
|---|
| 429 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
|
|---|
| 430 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
|
|---|
| 431 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
|
|---|
| 432 | ; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
|
|---|
| 433 | Q
|
|---|
| 434 | ;
|
|---|
| 435 | ADD2(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT
|
|---|
| 436 | ; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE
|
|---|
| 437 | I '$D(FARY) D ;
|
|---|
| 438 | . D INITFARY("C0XFARY")
|
|---|
| 439 | . S FARY="C0XFARY"
|
|---|
| 440 | D USEFARY(FARY)
|
|---|
| 441 | I '$D(C0XCNT) S C0XCNT=0
|
|---|
| 442 | N ZNODE
|
|---|
| 443 | S ZNODE="N"_$$LKY17
|
|---|
| 444 | N ZNARY ; GET READY TO CALL IENOFA
|
|---|
| 445 | S ZNARY("ZG",ZG)=""
|
|---|
| 446 | S ZNARY("ZS",ZS)=""
|
|---|
| 447 | S ZNARY("ZP",ZP)=""
|
|---|
| 448 | S ZNARY("ZO",ZO)=""
|
|---|
| 449 | D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS
|
|---|
| 450 | ;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN
|
|---|
| 451 | ;S ZSIEN=$$IENOF(ZS)
|
|---|
| 452 | ;S ZPIEN=$$IENOF(ZP)
|
|---|
| 453 | ;S ZOIEN=$$IENOF(ZO)
|
|---|
| 454 | ;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED
|
|---|
| 455 | S C0XCNT=C0XCNT+1
|
|---|
| 456 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.01)=ZNODE
|
|---|
| 457 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.02)=$O(ZIENS("IEN","ZG",""))
|
|---|
| 458 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.03)=$O(ZIENS("IEN","ZS",""))
|
|---|
| 459 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.04)=$O(ZIENS("IEN","ZP",""))
|
|---|
| 460 | S C0XFDA(C0XTFN,"?+"_C0XCNT_",",.05)=$O(ZIENS("IEN","ZO",""))
|
|---|
| 461 | S BATCNT=BATCNT+1
|
|---|
| 462 | I BATCNT=BATMAX D ; BATCH IS DONE
|
|---|
| 463 | . D UPDIE(.C0XFDA)
|
|---|
| 464 | . K C0XFDA
|
|---|
| 465 | . S BATCNT=0 ; RESET COUNTER
|
|---|
| 466 | ; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE
|
|---|
| 467 | Q
|
|---|
| 468 | ;
|
|---|
| 469 | LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
|
|---|
| 470 | ; UNIQUE NODE AND GRAPH NAMES
|
|---|
| 471 | N ZN,ZI
|
|---|
| 472 | S ZN=""
|
|---|
| 473 | F ZI=1:1:9 D ;
|
|---|
| 474 | . S ZN=ZN_$R(10)
|
|---|
| 475 | Q ZN
|
|---|
| 476 | ;
|
|---|
| 477 | LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING
|
|---|
| 478 | ; UNIQUE NODE AND GRAPH NAMES
|
|---|
| 479 | N ZN,ZI
|
|---|
| 480 | S ZN=""
|
|---|
| 481 | F ZI=1:1:17 D ;
|
|---|
| 482 | . S ZN=ZN_$R(10)
|
|---|
| 483 | Q ZN
|
|---|
| 484 | ;
|
|---|
| 485 | IENOF(ZSTRING,FARY) ; EXTRINSIC WHICH RETURNS THE IEN OF ZS IN THE STRINGS FILE
|
|---|
| 486 | I '$D(FARY) D ;
|
|---|
| 487 | . D INITFARY("C0XFARY")
|
|---|
| 488 | . S FARY="C0XFARY"
|
|---|
| 489 | N ZIEN
|
|---|
| 490 | S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
|
|---|
| 491 | I ZIEN="" D ;
|
|---|
| 492 | . S C0XFDA2(C0XSFN,"+1,",.01)=ZSTRING
|
|---|
| 493 | . D UPDIE(.C0XFDA2)
|
|---|
| 494 | . S ZIEN=$O(@C0XSN@("B",ZSTRING,""))
|
|---|
| 495 | . K C0XFDA2
|
|---|
| 496 | Q ZIEN
|
|---|
| 497 | ;
|
|---|
| 498 | IENOFA(ZOUTARY,ZINARY,FARY) ; RESOLVE STRINGS TO IEN IN STRINGS FILE
|
|---|
| 499 | ; OR ADD THEM IF
|
|---|
| 500 | ; MISSING. ZINARY AND ZOUTARY ARE PASSED BY REFERENCE
|
|---|
| 501 | ; ZINARY LOOKS LIKE ZINARY("VAR","VAL")=""
|
|---|
| 502 | ; RETURNS IN ZOUTARY OF THE FORM ZOUTARY("IEN","VAR",IEN)=""
|
|---|
| 503 | I '$D(FARY) D ;
|
|---|
| 504 | . D INITFARY("C0XFARY")
|
|---|
| 505 | . S FARY="C0XFARY"
|
|---|
| 506 | K ZOUTARY ; START WITH CLEAN RESULTS
|
|---|
| 507 | K C0XFDA2 ; USE A SEPARATE FDA FOR THIS
|
|---|
| 508 | N ZI S ZI=""
|
|---|
| 509 | N ZV,ZIEN
|
|---|
| 510 | N ZCNT S ZCNT=0
|
|---|
| 511 | F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; LOOK FOR MISSING STRINGS
|
|---|
| 512 | . S ZV=$O(ZINARY(ZI,""))
|
|---|
| 513 | . I $O(@C0XSN@("B",ZV,""))="" D ;
|
|---|
| 514 | . . S ZCNT=ZCNT+1
|
|---|
| 515 | . . S C0XFDA2(C0XSFN,"+"_ZCNT_",",.01)=ZV
|
|---|
| 516 | I $D(C0XFDA2) D ;
|
|---|
| 517 | . D UPDIE(.C0XFDA2) ; ADD MISSING STRINGS
|
|---|
| 518 | . K C0XFDA2 ; CLEAN UP
|
|---|
| 519 | F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; NOT GET ALL IENS
|
|---|
| 520 | . S ZV=$O(ZINARY(ZI,""))
|
|---|
| 521 | . S ZIEN=$O(@C0XSN@("B",ZV,"")) ; THEY SHOULD BE THERE NOW
|
|---|
| 522 | . I ZIEN="" D ;
|
|---|
| 523 | . . W !,"ERROR ADDING STRING: ",ZV
|
|---|
| 524 | . . B
|
|---|
| 525 | . S ZOUTARY("IEN",ZI,ZIEN)=""
|
|---|
| 526 | Q
|
|---|
| 527 | ;
|
|---|
| 528 | UPDIE(ZFDA) ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS
|
|---|
| 529 | ; ZFDA IS PASSED BY REFERENCE
|
|---|
| 530 | ;ZWR ZFDA
|
|---|
| 531 | ;B
|
|---|
| 532 | K ZERR
|
|---|
| 533 | D CLEAN^DILF
|
|---|
| 534 | D UPDATE^DIE("","ZFDA","","ZERR")
|
|---|
| 535 | I $D(ZERR) S ZZERR=ZZERR ; ZZERR DOESN'T EXIST,
|
|---|
| 536 | ; INVOKE THE ERROR TRAP IF TASKED
|
|---|
| 537 | ;. W "ERROR",!
|
|---|
| 538 | ;. ZWR ZERR
|
|---|
| 539 | ;. B
|
|---|
| 540 | K ZFDA
|
|---|
| 541 | Q
|
|---|
| 542 | ;
|
|---|
