source: hData/trunk/test-patients/csv2wiki.pl@ 1538

#!/usr/bin/perl -w
#this program converts a csv file of patient data to wikitext format
#
#this software is copyright George Lilly 2010 and is available as GPL
#its home is https://trac.opensourcevista.net/browser/hData/trunk/test-patients
#
#purpose: convert csv file to wikitext
#Second part of a chain of conversions which will create
#hData versions of the test patients. Also generate wiki-formatted versions
#to put on VistAPedia. 
#
my($intbl) = "none";
sub endtbl {
    print "\|\}\n";
}
sub dotr {
    print "\|----\n";
}
sub doetr {
    print "\|----\n";
}
sub spancol {
    my $tit = shift ; 
    my $cols = shift;
    print "\{\| border=\"1\"\|\n";
    print "\!colspan=\"$cols\"\|$tit\n";
}
sub docol {
    my $tit = shift ;
    print "\!scope\=\"col\"\|$tit\n";
}
sub dorow {
    my $tit = shift ;
    print "\|$tit\n";
}


while(<STDIN>)
{
    my($line) = $_;
    chomp($line);
    $line =~ s/ $//g;
    if (($line =~ m/^Patient/)&&($line !~ m/Summary/)) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Patient",6);
#       print "$line\n";
        $intbl = "Patient";
    }
    elsif (($intbl =~ "Patient")&&($line =~ m/^Name/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif ($line =~ m/^Problem List/) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Problem List",6);
#       print "$line\n";
        $intbl = "Problem List";
    }
    elsif (($intbl =~ "Problem List")&&($line =~ m/^Type/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif ($line =~ m/^Medication List/) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Medication List",10);
#       print "$line\n";
        $intbl = "Medication List";
    }
    elsif (($intbl =~ "Medication List")&&($line =~ m/^RxNorm/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif ($line =~ m/^Medication Allergy List/) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Medication Allergy List",5);
#       print "$line\n";
        $intbl = "Medication Allergy List";
    }
    elsif (($intbl =~ "Medication Allergy List")&&($line =~ m/^Type/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif ($line =~ m/^Diagnostic Test Results/) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Diagnostic Test Results",5);
#       print "$line\n";
        $intbl = "Diagnostic Test Results";
    }
    elsif (($intbl =~ "Diagnostic Test Results")&&($line =~ m/^Type/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif ($line =~ m/^Procedure List/) {
        if ($intbl !~ "none") { endtbl; }
        spancol("Procedure List",5);
#       print "$line\n";
        $intbl = "Procedure List";
    }
    elsif (($intbl =~ "Procedure List")&&($line =~ m/^Type/)) {
        dotr;
        $_ = $line;
        push @cols, split(/\|/);
        docol($_) for @cols ;
        doetr;
        @cols  = ();
    }
    elsif (($intbl !~ "none")&&($line =~ m/\|/)) {
        $_ = $line;
        push @rows, split(/\|/);
        dorow($_) for @rows ;
        doetr;
        @rows = ();
    }   
    else {
        if ($intbl !~ "none") { endtbl; }
        print "$line\n";
        $intbl = "none";
    }
}