| 1 | #!/usr/bin/perl -w
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| 2 | #this program converts a csv file of patient data to wikitext format
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| 3 | #
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| 4 | #this software is copyright George Lilly 2010 and is available as GPL
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| 5 | #its home is https://trac.opensourcevista.net/browser/hData/trunk/test-patients
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| 6 | #
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| 7 | #purpose: convert csv file to wikitext
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| 8 | #Second part of a chain of conversions which will create
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| 9 | #hData versions of the test patients. Also generate wiki-formatted versions
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| 10 | #to put on VistAPedia.
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| 11 | #
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| 12 | my($intbl) = "none";
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| 13 | sub endtbl {
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| 14 | print "\|\}\n";
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| 15 | }
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| 16 | sub dotr {
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| 17 | print "\|----\n";
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| 18 | }
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| 19 | sub doetr {
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| 20 | print "\|----\n";
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| 21 | }
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| 22 | sub spancol {
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| 23 | my $tit = shift ;
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| 24 | my $cols = shift;
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| 25 | print "\{\| border=\"1\"\|\n";
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| 26 | print "\!colspan=\"$cols\"\|$tit\n";
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| 27 | }
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| 28 | sub docol {
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| 29 | my $tit = shift ;
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| 30 | print "\!scope\=\"col\"\|$tit\n";
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| 31 | }
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| 32 | sub dorow {
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| 33 | my $tit = shift ;
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| 34 | print "\|$tit\n";
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| 35 | }
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| 36 |
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| 37 |
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| 38 | while(<STDIN>)
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| 39 | {
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| 40 | my($line) = $_;
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| 41 | chomp($line);
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| 42 | $line =~ s/ $//g;
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| 43 | if (($line =~ m/^Patient/)&&($line !~ m/Summary/)) {
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| 44 | if ($intbl !~ "none") { endtbl; }
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| 45 | spancol("Patient",6);
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| 46 | # print "$line\n";
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| 47 | $intbl = "Patient";
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| 48 | }
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| 49 | elsif (($intbl =~ "Patient")&&($line =~ m/^Name/)) {
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| 50 | dotr;
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| 51 | $_ = $line;
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| 52 | push @cols, split(/\|/);
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| 53 | docol($_) for @cols ;
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| 54 | doetr;
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| 55 | @cols = ();
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| 56 | }
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| 57 | elsif ($line =~ m/^Problem List/) {
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| 58 | if ($intbl !~ "none") { endtbl; }
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| 59 | spancol("Problem List",6);
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| 60 | # print "$line\n";
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| 61 | $intbl = "Problem List";
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| 62 | }
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| 63 | elsif (($intbl =~ "Problem List")&&($line =~ m/^Type/)) {
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| 64 | dotr;
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| 65 | $_ = $line;
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| 66 | push @cols, split(/\|/);
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| 67 | docol($_) for @cols ;
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| 68 | doetr;
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| 69 | @cols = ();
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| 70 | }
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| 71 | elsif ($line =~ m/^Medication List/) {
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| 72 | if ($intbl !~ "none") { endtbl; }
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| 73 | spancol("Medication List",10);
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| 74 | # print "$line\n";
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| 75 | $intbl = "Medication List";
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| 76 | }
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| 77 | elsif (($intbl =~ "Medication List")&&($line =~ m/^RxNorm/)) {
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| 78 | dotr;
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| 79 | $_ = $line;
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| 80 | push @cols, split(/\|/);
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| 81 | docol($_) for @cols ;
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| 82 | doetr;
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| 83 | @cols = ();
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| 84 | }
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| 85 | elsif ($line =~ m/^Medication Allergy List/) {
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| 86 | if ($intbl !~ "none") { endtbl; }
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| 87 | spancol("Medication Allergy List",5);
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| 88 | # print "$line\n";
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| 89 | $intbl = "Medication Allergy List";
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| 90 | }
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| 91 | elsif (($intbl =~ "Medication Allergy List")&&($line =~ m/^Type/)) {
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| 92 | dotr;
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| 93 | $_ = $line;
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| 94 | push @cols, split(/\|/);
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| 95 | docol($_) for @cols ;
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| 96 | doetr;
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| 97 | @cols = ();
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| 98 | }
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| 99 | elsif ($line =~ m/^Diagnostic Test Results/) {
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| 100 | if ($intbl !~ "none") { endtbl; }
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| 101 | spancol("Diagnostic Test Results",5);
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| 102 | # print "$line\n";
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| 103 | $intbl = "Diagnostic Test Results";
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| 104 | }
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| 105 | elsif (($intbl =~ "Diagnostic Test Results")&&($line =~ m/^Type/)) {
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| 106 | dotr;
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| 107 | $_ = $line;
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| 108 | push @cols, split(/\|/);
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| 109 | docol($_) for @cols ;
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| 110 | doetr;
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| 111 | @cols = ();
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| 112 | }
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| 113 | elsif ($line =~ m/^Procedure List/) {
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| 114 | if ($intbl !~ "none") { endtbl; }
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| 115 | spancol("Procedure List",5);
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| 116 | # print "$line\n";
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| 117 | $intbl = "Procedure List";
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| 118 | }
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| 119 | elsif (($intbl =~ "Procedure List")&&($line =~ m/^Type/)) {
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| 120 | dotr;
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| 121 | $_ = $line;
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| 122 | push @cols, split(/\|/);
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| 123 | docol($_) for @cols ;
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| 124 | doetr;
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| 125 | @cols = ();
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| 126 | }
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| 127 | elsif (($intbl !~ "none")&&($line =~ m/\|/)) {
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| 128 | $_ = $line;
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| 129 | push @rows, split(/\|/);
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| 130 | dorow($_) for @rows ;
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| 131 | doetr;
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| 132 | @rows = ();
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| 133 | }
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| 134 | else {
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| 135 | if ($intbl !~ "none") { endtbl; }
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| 136 | print "$line\n";
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| 137 | $intbl = "none";
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| 138 | }
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| 139 | }
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