source: smart/trunk/p/C0SDEM.m@ 1571

Last change on this file since 1571 was 1571, checked in by George Lilly, 12 years ago

fix for lab units not found and C0STBL analysis routines
File size: 9.8 KB
Line 
1C0SDEM ; GPL - Smart Demographics Processing ;2/22/12 17:05
2 ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 4
3 ;Copyright 2012 George Lilly. Licensed under the terms of the GNU
4 ;General Public License See attached copy of the License.
5 ;
6 ;This program is free software; you can redistribute it and/or modify
7 ;it under the terms of the GNU General Public License as published by
8 ;the Free Software Foundation; either version 2 of the License, or
9 ;(at your option) any later version.
10 ;
11 ;This program is distributed in the hope that it will be useful,
12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 ;GNU General Public License for more details.
15 ;
16 ;You should have received a copy of the GNU General Public License along
17 ;with this program; if not, write to the Free Software Foundation, Inc.,
18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
19 ;
20 Q
21 ;
22 ;<?xml version="1.0" encoding="utf-8"?>
23 ;<rdf:RDF
24 ; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
25 ; xmlns:sp="http://smartplatforms.org/terms#"
26 ; xmlns:dcterms="http://purl.org/dc/terms/"
27 ; xmlns:v="http://www.w3.org/2006/vcard/ns#"
28 ; xmlns:foaf="http://xmlns.com/foaf/0.1/">
29 ; <sp:Demographics>
30 ;
31 ; <v:n>
32 ; <v:Name>
33 ; <v:given-name>Bob</v:given-name>
34 ; <v:additional-name>J</v:additional-name>
35 ; <v:family-name>Odenkirk</v:family-name>
36 ; </v:Name>
37 ; </v:n>
38 ;
39 ; <v:adr>
40 ; <v:Address>
41 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
42 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
43 ;
44 ; <v:street-address>15 Main St</v:street-address>
45 ; <v:extended-address>Apt 2</v:extended-address>
46 ; <v:locality>Wonderland</v:locality>
47 ; <v:region>OZ</v:region>
48 ; <v:postal-code>54321</v:postal-code>
49 ; <v:country>USA</v:country>
50 ; </v:Address>
51 ; </v:adr>
52 ;
53 ; <v:tel>
54 ; <v:Tel>
55 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
56 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
57 ; <rdf:value>800-555-1212</rdf:value>
58 ; </v:Tel>
59 ; </v:tel>
60 ;
61 ; <v:tel>
62 ; <v:Tel>
63 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
64 ; <rdf:value>800-555-1515</rdf:value>
65 ; </v:Tel>
66 ; </v:tel>
67 ;
68 ; <foaf:gender>male</foaf:gender>
69 ; <v:bday>1959-12-25</v:bday>
70 ; <v:email>bob.odenkirk@example.com</v:email>
71 ;
72 ; <sp:medicalRecordNumber>
73 ; <sp:Code>
74 ; <dcterms:title>My Hospital Record 2304575</dcterms:title>
75 ; <dcterms:identifier>2304575</dcterms:identifier>
76 ; <sp:system>My Hospital Record</sp:system>
77 ; </sp:Code>
78 ; </sp:medicalRecordNumber>
79 ;
80 ; </sp:Demographics>
81 ;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
82 ;<rdf:RDF
83 ; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
84 ; xmlns:sp="http://smartplatforms.org/terms#"
85 ; xmlns:dcterms="http://purl.org/dc/terms/"
86 ; xmlns:v="http://www.w3.org/2006/vcard/ns#"
87 ; xmlns:foaf="http://xmlns.com/foaf/0.1/">
88 ; <sp:Demographics>
89 ;
90 ; <v:n>
91 ; <v:Name>
92 ; <v:given-name>Bob</v:given-name>
93 ; <v:additional-name>J</v:additional-name>
94 ; <v:family-name>Odenkirk</v:family-name>
95 ; </v:Name>
96 ; </v:n>
97 ;
98 ; <v:adr>
99 ; <v:Address>
100 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
101 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
102 ;
103 ; <v:street-address>15 Main St</v:street-address>
104 ; <v:extended-address>Apt 2</v:extended-address>
105 ; <v:locality>Wonderland</v:locality>
106 ; <v:region>OZ</v:region>
107 ; <v:postal-code>54321</v:postal-code>
108 ; <v:country>USA</v:country>
109 ; </v:Address>
110 ; </v:adr>
111 ;
112 ; <v:tel>
113 ; <v:Tel>
114 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
115 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
116 ; <rdf:value>800-555-1212</rdf:value>
117 ; </v:Tel>
118 ; </v:tel>
119 ;
120 ; <v:tel>
121 ; <v:Tel>
122 ; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
123 ; <rdf:value>800-555-1515</rdf:value>
124 ; </v:Tel>
125 ; </v:tel>
126 ;
127 ; <foaf:gender>male</foaf:gender>
128 ; <v:bday>1959-12-25</v:bday>
129 ; <v:email>bob.odenkirk@example.com</v:email>
130 ;
131 ; <sp:medicalRecordNumber>
132 ; <sp:Code>
133 ; <dcterms:title>My Hospital Record 2304575</dcterms:title>
134 ; <dcterms:identifier>2304575</dcterms:identifier>
135 ; <sp:system>My Hospital Record</sp:system>
136 ; </sp:Code>
137 ; </sp:medicalRecordNumber>
138 ;
139 ; </sp:Demographics>
140 ;</rdf:RDF>
141 ;G(1)="nodeID:25591^rdf:type^v:Home"
142 ;G(2)="nodeID:25591^rdf:type^v:Pref"
143 ;G(3)="nodeID:25591^rdf:type^v:Tel"
144 ;G(4)="nodeID:25591^rdf:value^800-369-6403"
145 ;G(5)="nodeID:25611^rdf:type^v:Name"
146 ;G(6)="nodeID:25611^v:additional-name^N"
147 ;G(7)="nodeID:25611^v:family-name^Brooks"
148 ;G(8)="nodeID:25611^v:given-name^Brian"
149 ;G(9)="nodeID:25622^dcterms:identifier^981968"
150 ;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
151 ;G(11)="nodeID:25622^rdf:type^sp:Code"
152 ;G(12)="nodeID:25622^sp:system^My Hospital Record"
153 ;G(13)="nodeID:25623^rdf:type^v:Address"
154 ;G(14)="nodeID:25623^rdf:type^v:Home"
155 ;G(15)="nodeID:25623^rdf:type^v:Pref"
156 ;G(16)="nodeID:25623^v:locality^Bixby"
157 ;G(17)="nodeID:25623^v:postal-code^74008"
158 ;G(18)="nodeID:25623^v:region^OK"
159 ;G(19)="nodeID:25623^v:street-address^82 Lake St"
160 ;G(20)="smart:981968/demographics^foaf:gender^male"
161 ;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
162 ;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
163 ;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
164 ;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
165 ;G(25)="smart:981968/demographics^v:bday^1956-03-23"
166 ;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
167 ;G(27)="smart:981968/demographics^v:n^nodeID:25611"
168 ;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
169 Q
170 ;
171PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
172 ; is the return name of the graph created. "" if none
173 ; C0SARY is passed in by reference and is the NHIN array of patient
174 ;
175 I $O(C0SARY("patient",""))="" D Q ;
176 . I $D(DEBUG) W !,"No Patient array"
177 . S GRTN=""
178 S GRTN="" ; default to no patient
179 N C0SGRF
180 S C0SGRF="vistaSmart:"_ZPATID_"/patient"
181 S ZPAT=C0SGRF ; subject is the same as the graph name
182 I $D(DEBUG) W !,"Processing ",C0SGRF
183 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
184 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
185 N FARY S FARY="C0XFARY"
186 D USEFARY^C0XF2N(FARY)
187 D VOCINIT^C0XUTIL
188 ;
189 N ZPN,ZR
190 D STARTADD^C0XF2N
191 ;
192 ; First do the base demographic graph
193 ;
194 S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
195 N SEX S SEX=$G(@ZPN@("gender@value"))
196 I SEX="M" S SEX="male"
197 I SEX="F" S SEX="female"
198 S ZR("foaf:gender")=SEX
199 S ZR("rdf:type")="sp:Demographics"
200 S ZR("sp:belongsTo")=ZPAT
201 N PATIENT
202 S PATIENT=$P(ZPAT,"#",2)
203 I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
204 N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
205 S ZR("sp:medicalRecordNumber")=NMREC
206 N NVADR S NVADR=$$ANONS^C0XF2N ; for address
207 S ZR("v:adr")=NVADR
208 N NNAME S NNAME=$$ANONS^C0XF2N ; for name
209 S ZR("v:n")=NNAME
210 N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
211 I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
212 N BDATE
213 S ZX=""
214 S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
215 S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
216 S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
217 I BDATE="" S BDATE="UNKNOWN"
218 N Z2,Z3
219 S Z2=$P(BDATE,"-",2)
220 S Z3=$P(BDATE,"-",3)
221 I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
222 I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
223 S ZR("v:bday")=BDATE
224 I $D(C0SVISTA) D ;
225 . S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
226 . S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
227 D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
228 K ZR
229 ;
230 ; create address sub-graph
231 ;
232 S ZR("rdf:type")="v:Address"
233 S ZR("rdf:type")="v:Home"
234 S ZR("v:locality")=$G(@ZPN@("address@city"))
235 S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
236 S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
237 S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
238 D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
239 K ZR
240 ;
241 ; create medical record subgraph
242 ;
243 S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
244 S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
245 S ZR("rdf:type")="sp:Code"
246 S ZR("sp:system")="VistA Patient Record"
247 D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
248 K ZR
249 ;
250 ; create name subgraph
251 ;
252 N ZNF,ZNL,ZNM,ZNAM
253 S ZR("rdf:type")="v:Name"
254 S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
255 S ZNF=$P(ZX," ",1) ; first name is first piece
256 S ZNM=$P(ZX," ",2) ; middle names are the rest
257 S ZR("v:additional-name")=ZNM
258 S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
259 S ZR("v:given-name")=ZNF
260 D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
261 K ZR
262 ;
263 ; create telephone subgraph
264 ;
265 D ;
266 . S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
267 . I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
268 . S ZR("rdf:type")="v:Tel"
269 . D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
270 K ZR
271 ;
272 ; load the demographics graph and all sub graphs to the triple store
273 ;
274 D BULKLOAD^C0XF2N(.C0XFDA)
275 S GRTN=C0SGRF
276 Q
277 ;
278AGES ; LIST ALL PATIENTS AND THEIR AGES
279 N ZI S ZI=0
280 F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
281 . N ZDOB
282 . S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
283 . N ZNAME
284 . S ZNAME=$P(^DPT(ZI,0),U)
285 . N ZSEX
286 . S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
287 . W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
288 Q
289 ;
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