Index: smart/trunk/data/6-lab-triples.txt =================================================================== --- smart/trunk/data/6-lab-triples.txt (revision 1541) +++ smart/trunk/data/6-lab-triples.txt (revision 1541) @@ -0,0 +1,80 @@ +loinc:2085-9^dcterms:identifier^2085-9 +loinc:2085-9^dcterms:title^HDL CHOLESTEROL +loinc:2085-9^rdf:type^sp:Code +loinc:2085-9^sp:system^http://loinc.org/codes/ +loinc:2093-3^dcterms:identifier^2093-3 +loinc:2093-3^dcterms:title^CHOLESTEROL +loinc:2093-3^rdf:type^sp:Code +loinc:2093-3^sp:system^http://loinc.org/codes/ +loinc:30522-7^dcterms:identifier^30522-7 +loinc:30522-7^dcterms:title^HIGH-SENSIVITY C-REACTIVE PROTEIN +loinc:30522-7^rdf:type^sp:Code +loinc:30522-7^sp:system^http://loinc.org/codes/ +nodeID:032215694^rdf:type^sp:ValueAndUnit +nodeID:032215694^sp:unit^HDL CHOLESTEROL +nodeID:032215694^sp:value^45 +nodeID:063813166^dcterms:title^CHOLESTEROL +nodeID:063813166^rdf:type^sp:CodedValue +nodeID:063813166^sp:code^loinc:2093-3 +nodeID:158083727^rdf:type^sp:Attribution +nodeID:158083727^sp:startDate^2012-04-25 +nodeID:274677128^rdf:type^sp:ValueAndUnit +nodeID:274677128^sp:unit^mg/dL +nodeID:274677128^sp:value^120 +nodeID:508295096^rdf:type^sp:Attribution +nodeID:508295096^sp:startDate^2012-04-25 +nodeID:540929713^rdf:type^sp:Attribution +nodeID:540929713^sp:startDate^2012-04-25 +nodeID:572993687^rdf:type^sp:ValueAndUnit +nodeID:572993687^sp:unit^mg/L +nodeID:572993687^sp:value^0 +nodeID:603258303^rdf:type^sp:ValueAndUnit +nodeID:603258303^sp:unit^mg/dL +nodeID:603258303^sp:value^163 +nodeID:606788887^rdf:type^sp:ValueRange +nodeID:606788887^sp:maximum^nodeID:890032220 +nodeID:606788887^sp:minimum^nodeID:274677128 +nodeID:616271691^rdf:type^sp:QuantitativeResult +nodeID:616271691^sp:normalRange^nodeID:606788887 +nodeID:616271691^sp:valueAndUnit^nodeID:603258303 +nodeID:639795394^rdf:type^sp:ValueRange +nodeID:639795394^sp:maximum^nodeID:832047616 +nodeID:639795394^sp:minimum^nodeID:572993687 +nodeID:659053466^dcterms:title^HDL CHOLESTEROL +nodeID:659053466^rdf:type^sp:CodedValue +nodeID:659053466^sp:code^loinc:2085-9 +nodeID:716700164^rdf:type^sp:ValueAndUnit +nodeID:716700164^sp:unit^mg/L +nodeID:716700164^sp:value^2.9 +nodeID:832047616^rdf:type^sp:ValueAndUnit +nodeID:832047616^sp:unit^mg/L +nodeID:832047616^sp:value^ 3 +nodeID:875882234^rdf:type^sp:QuantitativeResult +nodeID:875882234^sp:normalRange^nodeID:639795394 +nodeID:875882234^sp:valueAndUnit^nodeID:716700164 +nodeID:890032220^rdf:type^sp:ValueAndUnit +nodeID:890032220^sp:unit^mg/dL +nodeID:890032220^sp:value^ 200 +nodeID:909597545^dcterms:title^HIGH-SENSIVITY C-REACTIVE PROTEIN +nodeID:909597545^rdf:type^sp:CodedValue +nodeID:909597545^sp:code^loinc:30522-7 +nodeID:944122350^rdf:type^sp:QuantitativeResult +nodeID:944122350^sp:valueAndUnit^nodeID:032215694 +vistaSmart:6/lab_results/18050754592291778^rdf:type^sp:LabResult +vistaSmart:6/lab_results/18050754592291778^sp:belongsTo^vistaSmart:6/lab_results +vistaSmart:6/lab_results/18050754592291778^sp:labName^nodeID:063813166 +vistaSmart:6/lab_results/18050754592291778^sp:narrativeResult^nodeID:600844888 +vistaSmart:6/lab_results/18050754592291778^sp:quantitativeResult^nodeID:616271691 +vistaSmart:6/lab_results/18050754592291778^sp:specimenCollected^nodeID:158083727 +vistaSmart:6/lab_results/64750239894166499^rdf:type^sp:LabResult +vistaSmart:6/lab_results/64750239894166499^sp:belongsTo^vistaSmart:6/lab_results +vistaSmart:6/lab_results/64750239894166499^sp:labName^nodeID:659053466 +vistaSmart:6/lab_results/64750239894166499^sp:narrativeResult^nodeID:505088543 +vistaSmart:6/lab_results/64750239894166499^sp:quantitativeResult^nodeID:944122350 +vistaSmart:6/lab_results/64750239894166499^sp:specimenCollected^nodeID:540929713 +vistaSmart:6/lab_results/89548426370765804^rdf:type^sp:LabResult +vistaSmart:6/lab_results/89548426370765804^sp:belongsTo^vistaSmart:6/lab_results +vistaSmart:6/lab_results/89548426370765804^sp:labName^nodeID:909597545 +vistaSmart:6/lab_results/89548426370765804^sp:narrativeResult^nodeID:095171452 +vistaSmart:6/lab_results/89548426370765804^sp:quantitativeResult^nodeID:875882234 +vistaSmart:6/lab_results/89548426370765804^sp:specimenCollected^nodeID:508295096 Index: smart/trunk/data/6-lab.rdf =================================================================== --- smart/trunk/data/6-lab.rdf (revision 1541) +++ smart/trunk/data/6-lab.rdf (revision 1541) @@ -0,0 +1,131 @@ + + + +2085-9 +HDL CHOLESTEROL + + + + +2093-3 +CHOLESTEROL + + + + +30522-7 +HIGH-SENSIVITY C-REACTIVE PROTEIN + + + + + + + + + + +mg/dL +120 + + +HDL CHOLESTEROL + + + + +HIGH-SENSIVITY C-REACTIVE PROTEIN + + + + + +mg/L + 3 + + + + + + + + +2012-04-25 + + + + + + + + +mg/dL + 200 + + + + + + +CHOLESTEROL + + + + + +2012-04-25 + + + + + + + + +mg/L +0 + + + +mg/dL +163 + + + +2012-04-25 + + + +HDL CHOLESTEROL +45 + + + +mg/L +2.9 + + + + + + + + + + + + + + + + + + + + + + + + + + Index: smart/trunk/data/6-med-triples.txt =================================================================== --- smart/trunk/data/6-med-triples.txt (revision 1541) +++ smart/trunk/data/6-med-triples.txt (revision 1541) @@ -0,0 +1,42 @@ +nodeID:251667904^dcterms:title^ATORVASTATIN TAB +nodeID:251667904^rdf:type^sp:CodedValue +nodeID:251667904^sp:code^rxnorm:617314 +nodeID:482950547^sp:unit^UNKNOWN +nodeID:482950547^sp:value^0 +nodeID:513189765^sp:ValueAndUnit^nodeID:577056569 +nodeID:528278275^sp:unit^ mg Tab| 1 Add'l Sig +nodeID:528278275^sp:value^0 +nodeID:577056569^sp:unit^Oral +nodeID:577056569^sp:value^Select Frequency +nodeID:718165755^sp:ValueAndUnit^nodeID:528278275 +nodeID:742808564^sp:ValueAndUnit^nodeID:993436766 +nodeID:743714867^sp:ValueAndUnit^nodeID:482950547 +nodeID:785423494^dcterms:title^WARFARIN 3MG TAB +nodeID:785423494^rdf:type^sp:CodedValue +nodeID:785423494^sp:code^rxnorm:855320 +nodeID:993436766^sp:unit^by mouth +nodeID:993436766^sp:value^DAILY +rxnorm:617314^dcterms:identifier^617314 +rxnorm:617314^dcterms:title^ATORVASTATIN TAB +rxnorm:617314^rdf:type^http://smartplatforms.org/terms/codes/RxNorm_Semantic +rxnorm:617314^rdf:type^sp:Code +rxnorm:617314^sp:system^http://purl.bioontology.org/ontology/RXNORM/ +rxnorm:855320^dcterms:identifier^855320 +rxnorm:855320^dcterms:title^WARFARIN 3MG TAB +rxnorm:855320^rdf:type^http://smartplatforms.org/terms/codes/RxNorm_Semantic +rxnorm:855320^rdf:type^sp:Code +rxnorm:855320^sp:system^http://purl.bioontology.org/ontology/RXNORM/ +vistaSmart:6/med/12595-3110429.123852^rdf:type^sp:Medication +vistaSmart:6/med/12595-3110429.123852^sp:belongsTo^vistaSmart:6/med +vistaSmart:6/med/12595-3110429.123852^sp:drugName^nodeID:251667904 +vistaSmart:6/med/12595-3110429.123852^sp:frequency^nodeID:513189765 +vistaSmart:6/med/12595-3110429.123852^sp:instructions^ 1 Add'l Sig BY Oral Select Frequency +vistaSmart:6/med/12595-3110429.123852^sp:quantity^nodeID:718165755 +vistaSmart:6/med/12595-3110429.123852^sp:startDate^2011-4-29 +vistaSmart:6/med/4659-3110622.165848^rdf:type^sp:Medication +vistaSmart:6/med/4659-3110622.165848^sp:belongsTo^vistaSmart:6/med +vistaSmart:6/med/4659-3110622.165848^sp:drugName^nodeID:785423494 +vistaSmart:6/med/4659-3110622.165848^sp:frequency^nodeID:742808564 +vistaSmart:6/med/4659-3110622.165848^sp:instructions^ 1 tablet BY by mouth DAILY +vistaSmart:6/med/4659-3110622.165848^sp:quantity^nodeID:743714867 +vistaSmart:6/med/4659-3110622.165848^sp:startDate^2011-6-22 Index: smart/trunk/data/6-med.rdf =================================================================== --- smart/trunk/data/6-med.rdf (revision 1541) +++ smart/trunk/data/6-med.rdf (revision 1541) @@ -0,0 +1,73 @@ + + + + + + +ATORVASTATIN TAB + + + + + + + +UNKNOWN +0 + + +Oral +Select Frequency + + + + + + + + + mg Tab| 1 Add'l Sig +0 + + +by mouth +DAILY + + +WARFARIN 3MG TAB + + + + +617314 +ATORVASTATIN TAB + + + + + +855320 +WARFARIN 3MG TAB + + + + + + + + + + 1 Add'l Sig BY Oral Select Frequency + +2011-4-29 + + + + + + + 1 tablet BY by mouth DAILY + +2011-6-22 + + Index: smart/trunk/data/6-patient-triples.txt =================================================================== --- smart/trunk/data/6-patient-triples.txt (revision 1541) +++ smart/trunk/data/6-patient-triples.txt (revision 1541) @@ -0,0 +1,23 @@ +nodeID:163928854^rdf:type^v:Home +nodeID:163928854^v:locality^BIXBY +nodeID:163928854^v:postal-code^74008 +nodeID:163928854^v:region^OKLAHOMA +nodeID:163928854^v:street-address^635 Big Sky Ln +nodeID:627173842^rdf:type^v:Name +nodeID:627173842^v:additional-name^RYAN +nodeID:627173842^v:family-name^ALLEN +nodeID:627173842^v:given-name^JASON +nodeID:825405422^dcterms:identifier^6 +nodeID:825405422^dcterms:title^VistA Patient Record 6 +nodeID:825405422^rdf:type^sp:Code +nodeID:825405422^sp:system^VistA Patient Record +nodeID:835095016^rdf:type^v:Tel +nodeID:835095016^rdf:value^333-333-3334 +vistaSmart:6/patient^foaf:gender^male +vistaSmart:6/patient^rdf:type^sp:Demographics +vistaSmart:6/patient^sp:belongsTo^vistaSmart:6/patient +vistaSmart:6/patient^sp:medicalRecordNumber^nodeID:825405422 +vistaSmart:6/patient^v:adr^nodeID:163928854 +vistaSmart:6/patient^v:bday^1953-10-16 +vistaSmart:6/patient^v:n^nodeID:627173842 +vistaSmart:6/patient^v:tel^nodeID:835095016 Index: smart/trunk/data/6-patient.rdf =================================================================== --- smart/trunk/data/6-patient.rdf (revision 1541) +++ smart/trunk/data/6-patient.rdf (revision 1541) @@ -0,0 +1,36 @@ + + + + +333-333-3334 + + + +BIXBY +74008 +OKLAHOMA +635 Big Sky Ln + + +6 +VistA Patient Record 6 + +VistA Patient Record + + + +RYAN +ALLEN +JASON + + +male + + + + +1953-10-16 + + + + Index: smart/trunk/data/6-problem-triples.txt =================================================================== --- smart/trunk/data/6-problem-triples.txt (revision 1541) +++ smart/trunk/data/6-problem-triples.txt (revision 1541) @@ -0,0 +1,22 @@ +icd9:486.^dcterms:identifier^486. +icd9:486.^dcterms:title^Pneumonia +icd9:486.^rdf:type^sp:Code +icd9:486.^sp:system^http://purl.bioontology.org/ontology/ICD9 +icd9:496.^dcterms:identifier^496. +icd9:496.^dcterms:title^Chronic Obstructive Pulmonary Disease +icd9:496.^rdf:type^sp:Code +icd9:496.^sp:system^http://purl.bioontology.org/ontology/ICD9 +nodeID:114561837^dcterms:title^Pneumonia +nodeID:114561837^rdf:type^sp:CodedValue +nodeID:114561837^sp:code^icd9:486. +nodeID:427959727^dcterms:title^Chronic Obstructive Pulmonary Disease +nodeID:427959727^rdf:type^sp:CodedValue +nodeID:427959727^sp:code^icd9:496. +vistaSmart:6/problems/20586809954528225^rdf:type^sp:Problem +vistaSmart:6/problems/20586809954528225^sp:belongsTo^vistaSmart:6/problems +vistaSmart:6/problems/20586809954528225^sp:problemName^nodeID:427959727 +vistaSmart:6/problems/20586809954528225^sp:startDate^2011-05-04 +vistaSmart:6/problems/59957811696826321^rdf:type^sp:Problem +vistaSmart:6/problems/59957811696826321^sp:belongsTo^vistaSmart:6/problems +vistaSmart:6/problems/59957811696826321^sp:problemName^nodeID:114561837 +vistaSmart:6/problems/59957811696826321^sp:startDate^2011-05-04 Index: smart/trunk/data/6-problem.rdf =================================================================== --- smart/trunk/data/6-problem.rdf (revision 1541) +++ smart/trunk/data/6-problem.rdf (revision 1541) @@ -0,0 +1,37 @@ + + + +486. +Pneumonia + + + + +496. +Chronic Obstructive Pulmonary Disease + + + + +Chronic Obstructive Pulmonary Disease + + + + +Pneumonia + + + + + + + +2011-05-04 + + + + + +2011-05-04 + + Index: smart/trunk/data/nhin-2-array.txt =================================================================== --- smart/trunk/data/nhin-2-array.txt (revision 1541) +++ smart/trunk/data/nhin-2-array.txt (revision 1541) @@ -0,0 +1,301 @@ +G("allergy",1,"adverseEventType@value")="D" +G("allergy",1,"comments.comment@commentText")="active " +G("allergy",1,"comments.comment@commentType")="O" +G("allergy",1,"comments.comment@entered")=3110622.163636 +G("allergy",1,"comments.comment@enteredBy")="KING,MATTHEW MICHAEL" +G("allergy",1,"comments.comment@id")=1 +G("allergy",1,"drugIngredients.drugIngredient@name")="CEPHALEXIN" +G("allergy",1,"drugIngredients.drugIngredient@vuid")=4018891 +G("allergy",1,"entered@value")=3110622.1636 +G("allergy",1,"facility@code")="050" +G("allergy",1,"facility@name")="VOE OFFICE INSTITUTION" +G("allergy",1,"id@value")=51 +G("allergy",1,"localCode@value")="1495;PS(50.416," +G("allergy",1,"mechanism@value")="ALLERGY" +G("allergy",1,"name@value")="CEPHALEXIN" +G("allergy",1,"reactions.reaction@name")="HIVES" +G("allergy",1,"severity@value")="SEVERE" +G("allergy",1,"source@value")="O" +G("allergy",1,"vuid@value")=4018891 +G("lab",1,"collected@value")=3120425.231037 +G("lab",1,"comment")="GPLTEST SMART Report Released Date/Time: Apr 25, 2012@23: +1 + 1" +G("lab",1,"comment@xml:space")="preserve" +G("lab",1,"facility@code")=100 +G("lab",1,"facility@name")="VOE OFFICE INSTITUTION OLD" +G("lab",1,"groupName@value")="CH 0425 5" +G("lab",1,"id@value")="CH;6879573.768963;67008" +G("lab",1,"labOrderID@value")=118 +G("lab",1,"localName@value")="HDLCHLS" +G("lab",1,"loinc@value")="2085-9" +G("lab",1,"orderID@value")=855 +G("lab",1,"result@value")=45 +G("lab",1,"resulted@value")=3120425.231116 +G("lab",1,"sample@value")="SERUM" +G("lab",1,"specimen@code")="0X500" +G("lab",1,"specimen@name")="SERUM" +G("lab",1,"status@value")="completed" +G("lab",1,"test@value")="HDL CHOLESTEROL" +G("lab",1,"type@value")="CH" +G("lab",1,"vuid@value")=4662693 +G("lab",2,"collected@value")=3120425.230609 +G("lab",2,"comment")="~For Test: CHOLESTEROL ~GPLTEST SMART Report Released Dat +e + /Time: Apr 25, 2012@23:07" +G("lab",2,"comment@xml:space")="preserve" +G("lab",2,"facility@code")=100 +G("lab",2,"facility@name")="VOE OFFICE INSTITUTION OLD" +G("lab",2,"groupName@value")="CH 0425 3" +G("lab",2,"high@value")=" 200" +G("lab",2,"id@value")="CH;6879573.769391;12" +G("lab",2,"labOrderID@value")=103 +G("lab",2,"localName@value")="CHOL" +G("lab",2,"loinc@value")="2093-3" +G("lab",2,"low@value")="120 " +G("lab",2,"orderID@value")=852 +G("lab",2,"result@value")=163 +G("lab",2,"resulted@value")=3120425.230719 +G("lab",2,"sample@value")="SERUM" +G("lab",2,"specimen@code")="0X500" +G("lab",2,"specimen@name")="SERUM" +G("lab",2,"status@value")="completed" +G("lab",2,"test@value")="CHOLESTEROL" +G("lab",2,"type@value")="CH" +G("lab",2,"units@value")="mg/dL" +G("lab",2,"vuid@value")=4662777 +G("lab",3,"collected@value")=3120425.223729 +G("lab",3,"comment")="~For Test: HIGH-SENSIVITY C-REACTIVE PROTEIN ~GPLTEST SMA +R + T Report Released Date/Time: Apr 25, 2012@22:42" +G("lab",3,"comment@xml:space")="preserve" +G("lab",3,"facility@code")=100 +G("lab",3,"facility@name")="VOE OFFICE INSTITUTION OLD" +G("lab",3,"groupName@value")="CH 0425 1" +G("lab",3,"high@value")=" 3" +G("lab",3,"id@value")="CH;6879573.776271;1006" +G("lab",3,"labOrderID@value")=94 +G("lab",3,"localName@value")="HS-CRP" +G("lab",3,"loinc@value")="30522-7" +G("lab",3,"low@value")="0 " +G("lab",3,"orderID@value")=850 +G("lab",3,"result@value")=2.9 +G("lab",3,"resulted@value")=3120425.224231 +G("lab",3,"sample@value")="SERUM" +G("lab",3,"specimen@code")="0X500" +G("lab",3,"specimen@name")="SERUM" +G("lab",3,"status@value")="completed" +G("lab",3,"test@value")="HIGH-SENSIVITY C-REACTIVE PROTEIN" +G("lab",3,"type@value")="CH" +G("lab",3,"units@value")="mg/L" +G("lab",3,"vuid@value")=4673029 +G("med",1,"doses.dose@dose")=0 +G("med",1,"doses.dose@route")="Oral" +G("med",1,"doses.dose@schedule")="Select Frequency" +G("med",1,"doses.dose@units")=" mg Tab| 1 Add'l Sig" +G("med",1,"facility@code")="050" +G("med",1,"facility@name")="VOE OFFICE INSTITUTION" +G("med",1,"form@value")="TAB" +G("med",1,"id@value")="1N;O" +G("med",1,"name@value")="ATORVASTATIN TAB" +G("med",1,"ordered@value")=3110429.123852 +G("med",1,"orderingProvider@code")=77 +G("med",1,"orderingProvider@name")="LILLY,GEORGE" +G("med",1,"products.product.class@code")="ANTILIPEMIC AGENTS" +G("med",1,"products.product.vaGeneric@code")=3382 +G("med",1,"products.product.vaGeneric@name")="ATORVASTATIN" +G("med",1,"products.product.vaGeneric@vuid")=4024041 +G("med",1,"products.product.vaProduct@code")=12595 +G("med",1,"products.product.vaProduct@name")="ATORVASTATIN CA 10MG TAB" +G("med",1,"products.product.vaProduct@vuid")=4012960 +G("med",1,"products.product@code")=94208 +G("med",1,"products.product@name")="ATORVASTATIN 10MG" +G("med",1,"products.product@role")="D" +G("med",1,"sig")="Lipitor 10 mg Tab| 1 Add'l Sig BY Oral Select Frequency" +G("med",1,"sig@xml:space")="preserve" +G("med",1,"start@value")=3110429.1145 +G("med",1,"status@value")="active" +G("med",1,"stop@value")=3110504.13373 +G("med",1,"type@value")="OTC" +G("med",1,"vaType@value")="N" 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