Changeset 1569


Ignore:
Timestamp:
Oct 11, 2012, 1:42:56 PM (12 years ago)
Author:
George Lilly
Message:

fix to lab units of measure not found situation

Location:
smart/trunk/p
Files:
13 edited

Legend:

Unmodified
Added
Removed
  • smart/trunk/p/C0SDEM.m

    r1540 r1569  
    1 C0SDEM    ; GPL - Smart Demographics Processing ;2/22/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22         ;<?xml version="1.0" encoding="utf-8"?>
    23         ;<rdf:RDF
    24         ;  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    25         ;  xmlns:sp="http://smartplatforms.org/terms#"
    26         ;  xmlns:dcterms="http://purl.org/dc/terms/"
    27         ;  xmlns:v="http://www.w3.org/2006/vcard/ns#"
    28         ;  xmlns:foaf="http://xmlns.com/foaf/0.1/">
    29         ;   <sp:Demographics>
    30         ;
    31         ;     <v:n>
    32         ;        <v:Name>
    33         ;            <v:given-name>Bob</v:given-name>
    34         ;            <v:additional-name>J</v:additional-name>
    35         ;            <v:family-name>Odenkirk</v:family-name>
    36         ;        </v:Name>
    37         ;     </v:n>
    38         ;
    39         ;     <v:adr>
    40         ;        <v:Address>
    41         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
    42         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
    43         ;
    44         ;          <v:street-address>15 Main St</v:street-address>
    45         ;          <v:extended-address>Apt 2</v:extended-address>
    46         ;          <v:locality>Wonderland</v:locality>
    47         ;          <v:region>OZ</v:region>
    48         ;          <v:postal-code>54321</v:postal-code>
    49         ;          <v:country>USA</v:country>
    50         ;        </v:Address>
    51         ;     </v:adr>
    52         ;
    53         ;     <v:tel>
    54         ;        <v:Tel>
    55         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
    56         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
    57         ;          <rdf:value>800-555-1212</rdf:value>
    58         ;        </v:Tel>
    59         ;     </v:tel>
    60         ;
    61         ;     <v:tel>
    62         ;        <v:Tel>
    63         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
    64         ;          <rdf:value>800-555-1515</rdf:value>
    65         ;        </v:Tel>
    66         ;     </v:tel>
    67         ;
    68         ;     <foaf:gender>male</foaf:gender>
    69         ;     <v:bday>1959-12-25</v:bday>
    70         ;     <v:email>bob.odenkirk@example.com</v:email>
    71         ;
    72         ;     <sp:medicalRecordNumber>
    73         ;       <sp:Code>
    74         ;        <dcterms:title>My Hospital Record 2304575</dcterms:title>
    75         ;        <dcterms:identifier>2304575</dcterms:identifier>
    76         ;        <sp:system>My Hospital Record</sp:system>
    77         ;       </sp:Code>
    78         ;     </sp:medicalRecordNumber>
    79         ;
    80         ;   </sp:Demographics>
    81         ;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
    82         ;<rdf:RDF
    83         ;  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    84         ;  xmlns:sp="http://smartplatforms.org/terms#"
    85         ;  xmlns:dcterms="http://purl.org/dc/terms/"
    86         ;  xmlns:v="http://www.w3.org/2006/vcard/ns#"
    87         ;  xmlns:foaf="http://xmlns.com/foaf/0.1/">
    88         ;   <sp:Demographics>
    89         ;
    90         ;     <v:n>
    91         ;        <v:Name>
    92         ;            <v:given-name>Bob</v:given-name>
    93         ;            <v:additional-name>J</v:additional-name>
    94         ;            <v:family-name>Odenkirk</v:family-name>
    95         ;        </v:Name>
    96         ;     </v:n>
    97         ;
    98         ;     <v:adr>
    99         ;        <v:Address>
    100         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
    101         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
    102         ;
    103         ;          <v:street-address>15 Main St</v:street-address>
    104         ;          <v:extended-address>Apt 2</v:extended-address>
    105         ;          <v:locality>Wonderland</v:locality>
    106         ;          <v:region>OZ</v:region>
    107         ;          <v:postal-code>54321</v:postal-code>
    108         ;          <v:country>USA</v:country>
    109         ;        </v:Address>
    110         ;     </v:adr>
    111         ;
    112         ;     <v:tel>
    113         ;        <v:Tel>
    114         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
    115         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
    116         ;          <rdf:value>800-555-1212</rdf:value>
    117         ;        </v:Tel>
    118         ;     </v:tel>
    119         ;
    120         ;     <v:tel>
    121         ;        <v:Tel>
    122         ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
    123         ;          <rdf:value>800-555-1515</rdf:value>
    124         ;        </v:Tel>
    125         ;     </v:tel>
    126         ;
    127         ;     <foaf:gender>male</foaf:gender>
    128         ;     <v:bday>1959-12-25</v:bday>
    129         ;     <v:email>bob.odenkirk@example.com</v:email>
    130         ;
    131         ;     <sp:medicalRecordNumber>
    132         ;       <sp:Code>
    133         ;        <dcterms:title>My Hospital Record 2304575</dcterms:title>
    134         ;        <dcterms:identifier>2304575</dcterms:identifier>
    135         ;        <sp:system>My Hospital Record</sp:system>
    136         ;       </sp:Code>
    137         ;     </sp:medicalRecordNumber>
    138         ;
    139         ;   </sp:Demographics>
    140         ;</rdf:RDF>
    141         ;G(1)="nodeID:25591^rdf:type^v:Home"
    142         ;G(2)="nodeID:25591^rdf:type^v:Pref"
    143         ;G(3)="nodeID:25591^rdf:type^v:Tel"
    144         ;G(4)="nodeID:25591^rdf:value^800-369-6403"
    145         ;G(5)="nodeID:25611^rdf:type^v:Name"
    146         ;G(6)="nodeID:25611^v:additional-name^N"
    147         ;G(7)="nodeID:25611^v:family-name^Brooks"
    148         ;G(8)="nodeID:25611^v:given-name^Brian"
    149         ;G(9)="nodeID:25622^dcterms:identifier^981968"
    150         ;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
    151         ;G(11)="nodeID:25622^rdf:type^sp:Code"
    152         ;G(12)="nodeID:25622^sp:system^My Hospital Record"
    153         ;G(13)="nodeID:25623^rdf:type^v:Address"
    154         ;G(14)="nodeID:25623^rdf:type^v:Home"
    155         ;G(15)="nodeID:25623^rdf:type^v:Pref"
    156         ;G(16)="nodeID:25623^v:locality^Bixby"
    157         ;G(17)="nodeID:25623^v:postal-code^74008"
    158         ;G(18)="nodeID:25623^v:region^OK"
    159         ;G(19)="nodeID:25623^v:street-address^82 Lake St"
    160         ;G(20)="smart:981968/demographics^foaf:gender^male"
    161         ;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
    162         ;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
    163         ;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
    164         ;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
    165         ;G(25)="smart:981968/demographics^v:bday^1956-03-23"
    166         ;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
    167         ;G(27)="smart:981968/demographics^v:n^nodeID:25611"
    168         ;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
    169         Q
    170         ;
    171 PATIENT(GRTN,C0SARY)    ; GRTN, passed by reference,
    172         ; is the return name of the graph created. "" if none
    173         ; C0SARY is passed in by reference and is the NHIN array of patient
    174         ;
    175         I $O(C0SARY("patient",""))="" D  Q  ;
    176         . I $D(DEBUG) W !,"No Patient array"
    177         . S GRTN=""
    178         S GRTN="" ; default to no patient
    179         N C0SGRF
    180         S C0SGRF="vistaSmart:"_ZPATID_"/patient"
    181         S ZPAT=C0SGRF ; subject is the same as the graph name
    182         I $D(DEBUG) W !,"Processing ",C0SGRF
    183         D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
    184         D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
    185         N FARY S FARY="C0XFARY"
    186         D USEFARY^C0XF2N(FARY)
    187         D VOCINIT^C0XUTIL
    188         ;
    189         N ZPN,ZR
    190         D STARTADD^C0XF2N
    191         ;
    192         ; First do the base demographic graph
    193         ;
    194         S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
    195         N SEX S SEX=$G(@ZPN@("gender@value"))
    196         I SEX="M" S SEX="male"
    197         I SEX="F" S SEX="female"
    198         S ZR("foaf:gender")=SEX
    199         S ZR("rdf:type")="sp:Demographics"
    200         S ZR("sp:belongsTo")=ZPAT
    201         N PATIENT
    202         S PATIENT=$P(ZPAT,"#",2)
    203         I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
    204         N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
    205         S ZR("sp:medicalRecordNumber")=NMREC
    206         N NVADR S NVADR=$$ANONS^C0XF2N ; for address
    207         S ZR("v:adr")=NVADR
    208         N NNAME S NNAME=$$ANONS^C0XF2N ; for name
    209         S ZR("v:n")=NNAME
    210         N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
    211         I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
    212         N BDATE
    213         S ZX=""
    214         S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
    215         S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
    216         S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
    217         I BDATE="" S BDATE="UNKNOWN"
    218         N Z2,Z3
    219         S Z2=$P(BDATE,"-",2)
    220         S Z3=$P(BDATE,"-",3)
    221         I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
    222         I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
    223         S ZR("v:bday")=BDATE
    224         I $D(C0SVISTA) D  ;
    225         . S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
    226         . S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
    227         D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
    228         K ZR
    229         ;
    230         ; create address sub-graph
    231         ;
    232         S ZR("rdf:type")="v:Address"
    233         S ZR("rdf:type")="v:Home"
    234         S ZR("v:locality")=$G(@ZPN@("address@city"))
    235         S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
    236         S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
    237         S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
    238         D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
    239         K ZR
    240         ;
    241         ; create medical record subgraph
    242         ;
    243         S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
    244         S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
    245         S ZR("rdf:type")="sp:Code"
    246         S ZR("sp:system")="VistA Patient Record"
    247         D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
    248         K ZR
    249         ;
    250         ; create name subgraph
    251         ;
    252         N ZNF,ZNL,ZNM,ZNAM
    253         S ZR("rdf:type")="v:Name"
    254         S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
    255         S ZNF=$P(ZX," ",1) ; first name is first piece
    256         S ZNM=$P(ZX," ",2) ; middle names are the rest
    257         S ZR("v:additional-name")=ZNM
    258         S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
    259         S ZR("v:given-name")=ZNF
    260         D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
    261         K ZR
    262         ;
    263         ; create telephone subgraph
    264         ;
    265         D  ;
    266         . S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
    267         . I ZR("rdf:value")="" Q  ; telephone number missing, no subgraph
    268         . S ZR("rdf:type")="v:Tel"
    269         . D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
    270         K ZR
    271         ;
    272         ; load the demographics graph and all sub graphs to the triple store
    273         ;
    274         D BULKLOAD^C0XF2N(.C0XFDA)
    275         S GRTN=C0SGRF
    276         Q
    277         ;
    278 AGES    ; LIST ALL PATIENTS AND THEIR AGES
    279         N ZI S ZI=0
    280         F  S ZI=$O(^DPT(ZI)) Q:+ZI=0  D  ; FOR EVERY PATIENT
    281         . N ZDOB
    282         . S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
    283         . N ZNAME
    284         . S ZNAME=$P(^DPT(ZI,0),U)
    285         . N ZSEX
    286         . S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
    287         . W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
    288         Q
    289         ;
     1C0SDEM   ; GPL - Smart Demographics Processing ;2/22/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22 ;<?xml version="1.0" encoding="utf-8"?>
     23 ;<rdf:RDF
     24 ;  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     25 ;  xmlns:sp="http://smartplatforms.org/terms#"
     26 ;  xmlns:dcterms="http://purl.org/dc/terms/"
     27 ;  xmlns:v="http://www.w3.org/2006/vcard/ns#"
     28 ;  xmlns:foaf="http://xmlns.com/foaf/0.1/">
     29 ;   <sp:Demographics>
     30 ;
     31 ;     <v:n>
     32 ;        <v:Name>
     33 ;            <v:given-name>Bob</v:given-name>
     34 ;            <v:additional-name>J</v:additional-name>
     35 ;            <v:family-name>Odenkirk</v:family-name>
     36 ;        </v:Name>
     37 ;     </v:n>
     38 ;
     39 ;     <v:adr>
     40 ;        <v:Address>
     41 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
     42 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
     43 ;
     44 ;          <v:street-address>15 Main St</v:street-address>
     45 ;          <v:extended-address>Apt 2</v:extended-address>
     46 ;          <v:locality>Wonderland</v:locality>
     47 ;          <v:region>OZ</v:region>
     48 ;          <v:postal-code>54321</v:postal-code>
     49 ;          <v:country>USA</v:country>
     50 ;        </v:Address>
     51 ;     </v:adr>
     52 ;
     53 ;     <v:tel>
     54 ;        <v:Tel>
     55 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
     56 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
     57 ;          <rdf:value>800-555-1212</rdf:value>
     58 ;        </v:Tel>
     59 ;     </v:tel>
     60 ;
     61 ;     <v:tel>
     62 ;        <v:Tel>
     63 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
     64 ;          <rdf:value>800-555-1515</rdf:value>
     65 ;        </v:Tel>
     66 ;     </v:tel>
     67 ;
     68 ;     <foaf:gender>male</foaf:gender>
     69 ;     <v:bday>1959-12-25</v:bday>
     70 ;     <v:email>bob.odenkirk@example.com</v:email>
     71 ;
     72 ;     <sp:medicalRecordNumber>
     73 ;       <sp:Code>
     74 ;        <dcterms:title>My Hospital Record 2304575</dcterms:title>
     75 ;        <dcterms:identifier>2304575</dcterms:identifier>
     76 ;        <sp:system>My Hospital Record</sp:system>
     77 ;       </sp:Code>
     78 ;     </sp:medicalRecordNumber>
     79 ;
     80 ;   </sp:Demographics>
     81 ;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
     82 ;<rdf:RDF
     83 ;  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     84 ;  xmlns:sp="http://smartplatforms.org/terms#"
     85 ;  xmlns:dcterms="http://purl.org/dc/terms/"
     86 ;  xmlns:v="http://www.w3.org/2006/vcard/ns#"
     87 ;  xmlns:foaf="http://xmlns.com/foaf/0.1/">
     88 ;   <sp:Demographics>
     89 ;
     90 ;     <v:n>
     91 ;        <v:Name>
     92 ;            <v:given-name>Bob</v:given-name>
     93 ;            <v:additional-name>J</v:additional-name>
     94 ;            <v:family-name>Odenkirk</v:family-name>
     95 ;        </v:Name>
     96 ;     </v:n>
     97 ;
     98 ;     <v:adr>
     99 ;        <v:Address>
     100 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
     101 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
     102 ;
     103 ;          <v:street-address>15 Main St</v:street-address>
     104 ;          <v:extended-address>Apt 2</v:extended-address>
     105 ;          <v:locality>Wonderland</v:locality>
     106 ;          <v:region>OZ</v:region>
     107 ;          <v:postal-code>54321</v:postal-code>
     108 ;          <v:country>USA</v:country>
     109 ;        </v:Address>
     110 ;     </v:adr>
     111 ;
     112 ;     <v:tel>
     113 ;        <v:Tel>
     114 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
     115 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
     116 ;          <rdf:value>800-555-1212</rdf:value>
     117 ;        </v:Tel>
     118 ;     </v:tel>
     119 ;
     120 ;     <v:tel>
     121 ;        <v:Tel>
     122 ;          <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
     123 ;          <rdf:value>800-555-1515</rdf:value>
     124 ;        </v:Tel>
     125 ;     </v:tel>
     126 ;
     127 ;     <foaf:gender>male</foaf:gender>
     128 ;     <v:bday>1959-12-25</v:bday>
     129 ;     <v:email>bob.odenkirk@example.com</v:email>
     130 ;
     131 ;     <sp:medicalRecordNumber>
     132 ;       <sp:Code>
     133 ;        <dcterms:title>My Hospital Record 2304575</dcterms:title>
     134 ;        <dcterms:identifier>2304575</dcterms:identifier>
     135 ;        <sp:system>My Hospital Record</sp:system>
     136 ;       </sp:Code>
     137 ;     </sp:medicalRecordNumber>
     138 ;
     139 ;   </sp:Demographics>
     140 ;</rdf:RDF>
     141 ;G(1)="nodeID:25591^rdf:type^v:Home"
     142 ;G(2)="nodeID:25591^rdf:type^v:Pref"
     143 ;G(3)="nodeID:25591^rdf:type^v:Tel"
     144 ;G(4)="nodeID:25591^rdf:value^800-369-6403"
     145 ;G(5)="nodeID:25611^rdf:type^v:Name"
     146 ;G(6)="nodeID:25611^v:additional-name^N"
     147 ;G(7)="nodeID:25611^v:family-name^Brooks"
     148 ;G(8)="nodeID:25611^v:given-name^Brian"
     149 ;G(9)="nodeID:25622^dcterms:identifier^981968"
     150 ;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
     151 ;G(11)="nodeID:25622^rdf:type^sp:Code"
     152 ;G(12)="nodeID:25622^sp:system^My Hospital Record"
     153 ;G(13)="nodeID:25623^rdf:type^v:Address"
     154 ;G(14)="nodeID:25623^rdf:type^v:Home"
     155 ;G(15)="nodeID:25623^rdf:type^v:Pref"
     156 ;G(16)="nodeID:25623^v:locality^Bixby"
     157 ;G(17)="nodeID:25623^v:postal-code^74008"
     158 ;G(18)="nodeID:25623^v:region^OK"
     159 ;G(19)="nodeID:25623^v:street-address^82 Lake St"
     160 ;G(20)="smart:981968/demographics^foaf:gender^male"
     161 ;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
     162 ;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
     163 ;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
     164 ;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
     165 ;G(25)="smart:981968/demographics^v:bday^1956-03-23"
     166 ;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
     167 ;G(27)="smart:981968/demographics^v:n^nodeID:25611"
     168 ;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
     169 Q
     170 ;
     171PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
     172 ; is the return name of the graph created. "" if none
     173 ; C0SARY is passed in by reference and is the NHIN array of patient
     174 ;
     175 I $O(C0SARY("patient",""))="" D  Q  ;
     176 . I $D(DEBUG) W !,"No Patient array"
     177 . S GRTN=""
     178 S GRTN="" ; default to no patient
     179 N C0SGRF
     180 S C0SGRF="vistaSmart:"_ZPATID_"/patient"
     181 S ZPAT=C0SGRF ; subject is the same as the graph name
     182 I $D(DEBUG) W !,"Processing ",C0SGRF
     183 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
     184 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
     185 N FARY S FARY="C0XFARY"
     186 D USEFARY^C0XF2N(FARY)
     187 D VOCINIT^C0XUTIL
     188 ;
     189 N ZPN,ZR
     190 D STARTADD^C0XF2N
     191 ;
     192 ; First do the base demographic graph
     193 ;
     194 S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
     195 N SEX S SEX=$G(@ZPN@("gender@value"))
     196 I SEX="M" S SEX="male"
     197 I SEX="F" S SEX="female"
     198 S ZR("foaf:gender")=SEX
     199 S ZR("rdf:type")="sp:Demographics"
     200 S ZR("sp:belongsTo")=ZPAT
     201 N PATIENT
     202 S PATIENT=$P(ZPAT,"#",2)
     203 I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
     204 N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
     205 S ZR("sp:medicalRecordNumber")=NMREC
     206 N NVADR S NVADR=$$ANONS^C0XF2N ; for address
     207 S ZR("v:adr")=NVADR
     208 N NNAME S NNAME=$$ANONS^C0XF2N ; for name
     209 S ZR("v:n")=NNAME
     210 N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
     211 I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
     212 N BDATE
     213 S ZX=""
     214 S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
     215 S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
     216 S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
     217 I BDATE="" S BDATE="UNKNOWN"
     218 N Z2,Z3
     219 S Z2=$P(BDATE,"-",2)
     220 S Z3=$P(BDATE,"-",3)
     221 I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
     222 I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
     223 S ZR("v:bday")=BDATE
     224 I $D(C0SVISTA) D  ;
     225 . S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
     226 . S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
     227 D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
     228 K ZR
     229 ;
     230 ; create address sub-graph
     231 ;
     232 S ZR("rdf:type")="v:Address"
     233 S ZR("rdf:type")="v:Home"
     234 S ZR("v:locality")=$G(@ZPN@("address@city"))
     235 S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
     236 S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
     237 S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
     238 D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
     239 K ZR
     240 ;
     241 ; create medical record subgraph
     242 ;
     243 S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
     244 S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
     245 S ZR("rdf:type")="sp:Code"
     246 S ZR("sp:system")="VistA Patient Record"
     247 D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
     248 K ZR
     249 ;
     250 ; create name subgraph
     251 ;
     252 N ZNF,ZNL,ZNM,ZNAM
     253 S ZR("rdf:type")="v:Name"
     254 S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
     255 S ZNF=$P(ZX," ",1) ; first name is first piece
     256 S ZNM=$P(ZX," ",2) ; middle names are the rest
     257 S ZR("v:additional-name")=ZNM
     258 S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
     259 S ZR("v:given-name")=ZNF
     260 D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
     261 K ZR
     262 ;
     263 ; create telephone subgraph
     264 ;
     265 D  ;
     266 . S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
     267 . I ZR("rdf:value")="" Q  ; telephone number missing, no subgraph
     268 . S ZR("rdf:type")="v:Tel"
     269 . D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
     270 K ZR
     271 ;
     272 ; load the demographics graph and all sub graphs to the triple store
     273 ;
     274 D BULKLOAD^C0XF2N(.C0XFDA)
     275 S GRTN=C0SGRF
     276 Q
     277 ;
     278AGES ; LIST ALL PATIENTS AND THEIR AGES
     279 N ZI S ZI=0
     280 F  S ZI=$O(^DPT(ZI)) Q:+ZI=0  D  ; FOR EVERY PATIENT
     281 . N ZDOB
     282 . S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
     283 . N ZNAME
     284 . S ZNAME=$P(^DPT(ZI,0),U)
     285 . N ZSEX
     286 . S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
     287 . W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
     288 Q
     289 ;
  • smart/trunk/p/C0SDOM.m

    r1540 r1569  
    1 C0SDOM    ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2011,2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11        
    12         ;This program is distributed in the hope that it will be useful,
    13         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    14         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    15         ;GNU General Public License for more details.
    16         ;
    17         ;You should have received a copy of the GNU General Public License along
    18         ;with this program; if not, write to the Free Software Foundation, Inc.,
    19         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    20         ;
    21         Q
    22         ;
    23 DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
    24         ; THE XPATH INDEX ZXIDX, PASSED BY NAME
    25         ; THE XPATH ARRAY XPARY, PASSED BY NAME
    26         ; ZOID IS THE STARTING OID
    27         ; ZPATH IS THE STARTING XPATH, USUALLY "/"
    28         ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
    29         ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
    30         I $G(ZREDUX)="" S ZREDUX=""
    31         N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
    32         N NEWNUM S NEWNUM=""
    33         I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
    34         S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
    35         I $G(ZREDUX)'="" D  ; REDUX PROVIDED?
    36         . N GT S GT=$P(NEWPATH,ZREDUX,2)
    37         . I GT'="" S NEWPATH=GT
    38         S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
    39         N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
    40         I $D(GA) D  ; PROCESS THE ATTRIBUTES
    41         . N ZI S ZI=""
    42         . F  S ZI=$O(GA(ZI)) Q:ZI=""  D  ; FOR EACH ATTRIBUTE
    43         . . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
    44         . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
    45         . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
    46         N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
    47         I $D(GD(2)) D  ;
    48         . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
    49         E  I $D(GD(1)) D  ;
    50         . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
    51         . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
    52         N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
    53         I ZFRST'=0 D  ; THERE IS A CHILD
    54         . N ZNUM
    55         . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
    56         . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
    57         N GNXT S GNXT=$$NXTSIB(ZOID)
    58         I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
    59         I GNXT'=0 D  ;
    60         . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
    61         . I (ZNUM="")&(ZMULT) D  ; SIBLING IS FIRST OF MULTIPLES
    62         . . N ZNUM S ZNUM=1 ;
    63         . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
    64         . E  D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
    65         Q
    66         ;
    67 ADDNARY(ZXP,ZVALUE)     ; ADD AN NHIN ARRAY VALUE TO ZNARY
    68         ;
    69         ; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
    70         ;
    71         N ZZI,ZZJ,ZZN
    72         S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
    73         I ZZI="" Q  ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
    74         S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
    75         S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
    76         I ZZI'["]" D  ; A SINGLETON
    77         . S ZZN=1
    78         E  D  ; THERE IS AN [x] OCCURANCE
    79         . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
    80         . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
    81         I ZZJ'="" D  ; TIME TO ADD THE VALUE
    82         . S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
    83         Q
    84         ;
    85 PARSE(INXML,INDOC)      ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
    86         ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
    87         ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
    88         ;Q $$EN^MXMLDOM(INXML)
    89         Q $$EN^MXMLDOM(INXML,"W")
    90         ;
    91 ISMULT(ZOID)    ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
    92         N ZN
    93         ;I $$TAG(ZOID)["entry" B
    94         S ZN=$$NXTSIB(ZOID)
    95         I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
    96         Q 0
    97         ;
    98 FIRST(ZOID)     ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
    99         Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
    100         ;
    101 PARENT(ZOID)    ;RETURNS THE OID OF THE PARENT OF ZOID
    102         Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
    103         ;
    104 ATT(RTN,NODE)   ;GET ATTRIBUTES FOR ZOID
    105         S HANDLE=C0SDOCID
    106         K @RTN
    107         D GETTXT^MXMLDOM("A")
    108         Q
    109         ;
    110 TAG(ZOID)       ; RETURNS THE XML TAG FOR THE NODE
    111         ;I ZOID=149 B ;GPLTEST
    112         N X,Y
    113         S Y=""
    114         S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
    115         I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
    116         I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
    117         Q Y
    118         ;
    119 NXTSIB(ZOID)    ; RETURNS THE NEXT SIBLING
    120         Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
    121         ;
    122 DATA(ZT,ZOID)   ; RETURNS DATA FOR THE NODE
    123         ;N ZT,ZN S ZT=""
    124         ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
    125         ;Q $G(@C0SDOM@(ZOID,"T",1))
    126         S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
    127         Q
    128         ;
    129 OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
    130         ;
    131         S C0SDOCID=INID
    132         I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE <?xml tag generation
    133         D START^C0SMXMLB($$TAG(1),,"G",NO1ST)
    134         D NDOUT($$FIRST(1))
    135         D END^C0SMXMLB ;END THE DOCUMENT
    136         M @ZRTN=^TMP("MXMLBLD",$J)
    137         K ^TMP("MXMLBLD",$J)
    138         Q
    139         ;
    140 NDOUT(ZOID)     ;CALLBACK ROUTINE - IT IS RECURSIVE
    141         N ZI S ZI=$$FIRST(ZOID)
    142         I ZI'=0 D  ; THERE IS A CHILD
    143         . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
    144         . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
    145         E  D  ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
    146         . ;W "DOING",ZOID,!
    147         . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
    148         . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
    149         . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
    150         I $$NXTSIB(ZOID)'=0 D  ; THERE IS A SIBLING
    151         . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
    152         Q
    153         ;
    154 WNHIN(ZDFN)     ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
    155         ;
    156         N GN,GN2
    157         D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
    158         S GN2=$NA(@GN@(1))
    159         W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
    160         Q
    161         ;
    162 NARY2XML(ZGOUT,ZGIN)    ; CREATE XML FROM AN NHIN ARRAY
    163         ; ZGOUT AND ZGIN ARE PASSED BY NAME
    164         N C0SDOCID
    165         W !,ZGOUT," ",ZGIN
    166         S C0SDOCID=$$DOMI(ZGIN) ; PUT IT INTO THE DOM
    167         D OUTXML(ZGOUT,C0SDOCID)
    168         Q
    169         ;
    170         ; EXAMPLE OF NHIN ARRAY FORMAT - THIS IS AN OUTPUT OF DOMO ABOVE WHEN RUN
    171         ; AGAINST THE OUTPUT OF THE GET^NHINV ROUTINE. (THIS IS NOT REAL PATIENT DATA)
    172         ;
    173         ;GNARY("med",1,"doses.dose@dose")=10
    174         ;GNARY("med",1,"doses.dose@noun")="TABLET"
    175         ;GNARY("med",1,"doses.dose@route")="PO"
    176         ;GNARY("med",1,"doses.dose@schedule")="QD"
    177         ;GNARY("med",1,"doses.dose@units")="MG"
    178         ;GNARY("med",1,"doses.dose@unitsPerDose")=1
    179         ;GNARY("med",1,"facility@code")=100
    180         ;GNARY("med",1,"facility@name")="VOE OFFICE INSTITUTION"
    181         ;GNARY("med",1,"form@value")="TAB"
    182         ;GNARY("med",1,"id@value")="1N;O"
    183         ;GNARY("med",1,"location@code")=5
    184         ;GNARY("med",1,"location@name")="3 WEST"
    185         ;GNARY("med",1,"name@value")="LISINOPRIL TAB"
    186         ;GNARY("med",1,"orderID@value")=294
    187         ;GNARY("med",1,"ordered@value")=3110531.001233
    188         ;GNARY("med",1,"orderingProvider@code")=63
    189         ;GNARY("med",1,"orderingProvider@name")="KING,MATTHEW MICHAEL"
    190         ;GNARY("med",1,"products.product.class@code")="ACE INHIBITORS"
    191         ;GNARY("med",1,"products.product.vaGeneric@code")=1990
    192         ;GNARY("med",1,"products.product.vaGeneric@name")="LISINOPRIL"
    193         ;GNARY("med",1,"products.product.vaGeneric@vuid")=4019380
    194         ;GNARY("med",1,"products.product.vaProduct@code")=8118
    195         ;GNARY("med",1,"products.product.vaProduct@name")="LISINOPRIL 10MG TAB"
    196         ;GNARY("med",1,"products.product.vaProduct@vuid")=4008593
    197         ;GNARY("med",1,"products.product@code")=6174
    198         ;GNARY("med",1,"products.product@name")="LISINOPRIL 10MG U/D"
    199         ;GNARY("med",1,"products.product@role")="D"
    200         ;GNARY("med",1,"sig")="10MG BY MOUTH EVERY DAY"
    201         ;GNARY("med",1,"sig@xml:space")="preserve"
    202         ;GNARY("med",1,"status@value")="active"
    203         ;GNARY("med",1,"type@value")="OTC"
    204         ;GNARY("med",1,"vaType@value")="N"
    205         ;
    206         ; DOMI is an extrinsic to insert NHIN ARRAY FORMAT arrays into the DOM
    207         ; it returns 0 or 1 based on success.
    208         ;
    209         ; INARY is passed by name and has the format shown above
    210         ; HANDLE is the document number in the DOM (both MXML and EWD DOMs will
    211         ; be supported eventually - initial implementation is for MXML
    212         ;
    213         ; PARENT is the node id or tag of the parent under which the DOM will
    214         ; be populated. If it is numeric, it is a node. If it is a string, the DOM
    215         ; will be searched to find the tag. If not found and there is no root,
    216         ; it will be inserted as the root. If not found and there is a root, it
    217         ; will be inserted under the root.
    218         ;
    219         ; For the above example the call would be OK=$$DOMI("GNARY",0,"results")
    220         ; because "results" is the root tag. Use OUTXML to render the xml from
    221         ; the DOM.
    222         ;
    223 DOMI(INARY,HANDLE,PARENT)       ; EXTRINSIC TO INSERT NHIN ARRAYS TO A DOM
    224         ;
    225         N ZPARNODE
    226         S (SUCCESS,LEVEL,LEVEL(0),NODE)=0
    227         I '$D(INARY) Q 0 ; NO ARRAY PASSED
    228         I '$D(HANDLE) S HANDLE=$$NEWDOM() ; MAKE A NEW DOM
    229         ;I PARENT="" S PARENT="root"
    230         I +$G(PARENT)>0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
    231         E  I $L($G(PARENT))>0 D  ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
    232         . D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
    233         . S ZPARNODE=1 ;
    234         ; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
    235         N ZEXARY
    236         D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
    237         D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
    238         I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
    239         Q HANDLE ; SUCCESS
    240         ;
    241 MAJOR(ZARY)     ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
    242         N ZI S ZI=""
    243         N ZTAG
    244         F  S ZI=$O(@ZARY@(ZI)) Q:ZI=""  D  ; FOR EACH SECTION
    245         . N ZELEADD S ZELEADD=0
    246         . I ZI["@" D  ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
    247         . . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
    248         . . K ZATT ; CLEAR OUT LAST ONE
    249         . . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
    250         . . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
    251         . . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
    252         . I $O(@ZARY@(ZI,""))="" D  ;END NODE
    253         . . S ZTAG=ZI ; USE ZI FOR THE TAG
    254         . . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
    255         . . S ZELEADD=1 ; ADDED AN ELEMENT
    256         . . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
    257         . I ZELEADD D  Q  ; NO MORE TO DO ON THIS LEVEL
    258         . . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
    259         . N NEWARY ; INDENTED ARRAY
    260         . N ZN S ZN=0
    261         . F  S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN=""  D  ; FOR EACH MULTIPLE
    262         . . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
    263         . . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
    264         . . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
    265         . . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
    266         Q
    267         ;
    268 EXPAND(ZZOUT,ZZIN)      ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
    269         ; CONSISTENT FORMAT
    270         ; GNARY("patient",1,"facilities[2].facility@code")="050"
    271         ; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
    272         ; for easier processing (this is fileman format genius)
    273         ; basically removes the dot notation from the strings
    274         ;
    275         N ZZI
    276         S ZZI=""
    277         F  S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI=""  D  ;
    278         . N ZZN S ZZN=0
    279         . F  S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN=""  D  ;
    280         . . N ZZS S ZZS=""
    281         . . N GA ;PUSH STACK
    282         . . F  S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS=""  D  ;
    283         . . . K GA ; NEW STACK
    284         . . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
    285         . . . N ZZV ; PLACE TO STASH THE VALUE
    286         . . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
    287         . . . W !,"VALUE:",ZZV
    288         . . . N GK ; COUNTER
    289         . . . F GK=1:1:$L(ZZS,".") D  ; FOR EACH INTERMEDIATE NODE
    290         . . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
    291         . . . . N GM S GM=$P(ZZS,".",GK) ; TAG
    292         . . . . I GM["[" D  ; IT'S A MULTIPLE
    293         . . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
    294         . . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
    295         . . . . I GM["@" D  ; IT'S GOT ATTRIBUTES
    296         . . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
    297         . . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
    298         . . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
    299         . . . . E  D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
    300         . . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
    301         . . . N GZI S GZI="" ; STRING FOR THE INDEX
    302         . . . F GK=1:1:GA(0) D  ; TIME TO REVERSE POP THE TAGS
    303         . . . . S GM=$P(GA(GK),"^",1) ; THE TAG
    304         . . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
    305         . . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
    306         . . . . E  S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
    307         . . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
    308         . . . W !,GZI
    309         . . . S @GZI2=ZZV ; REMEMBER THE VALUE?
    310         Q
    311         ;
    312 NEWDOM()        ; extrinsic which creates a new DOM and returns the HANDLE
    313         N CBK,SUCCESS,LEVEL,NODE,HANDLE
    314         K ^TMP("MXMLERR",$J)
    315         L +^TMP("MXMLDOM",$J):5
    316         E  Q 0
    317         S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
    318         L -^TMP("MXMLDOM",$J)
    319         Q HANDLE
    320         ;
     1C0SDOM   ; GPL - Smart Container - DOM PROCESSING ROUTINES ;6/6/11  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2011,2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11
     12 ;This program is distributed in the hope that it will be useful,
     13 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     14 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     15 ;GNU General Public License for more details.
     16 ;
     17 ;You should have received a copy of the GNU General Public License along
     18 ;with this program; if not, write to the Free Software Foundation, Inc.,
     19 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     20 ;
     21 Q
     22 ;
     23DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
     24 ; THE XPATH INDEX ZXIDX, PASSED BY NAME
     25 ; THE XPATH ARRAY XPARY, PASSED BY NAME
     26 ; ZOID IS THE STARTING OID
     27 ; ZPATH IS THE STARTING XPATH, USUALLY "/"
     28 ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
     29 ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
     30 I $G(ZREDUX)="" S ZREDUX=""
     31 N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
     32 N NEWNUM S NEWNUM=""
     33 I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
     34 S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
     35 I $G(ZREDUX)'="" D  ; REDUX PROVIDED?
     36 . N GT S GT=$P(NEWPATH,ZREDUX,2)
     37 . I GT'="" S NEWPATH=GT
     38 S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
     39 N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
     40 I $D(GA) D  ; PROCESS THE ATTRIBUTES
     41 . N ZI S ZI=""
     42 . F  S ZI=$O(GA(ZI)) Q:ZI=""  D  ; FOR EACH ATTRIBUTE
     43 . . N ZP S ZP=NEWPATH_"@"_ZI ; PATH FOR ATTRIBUTE
     44 . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
     45 . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
     46 N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
     47 I $D(GD(2)) D  ;
     48 . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
     49 E  I $D(GD(1)) D  ;
     50 . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
     51 . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
     52 N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
     53 I ZFRST'=0 D  ; THERE IS A CHILD
     54 . N ZNUM
     55 . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
     56 . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
     57 N GNXT S GNXT=$$NXTSIB(ZOID)
     58 I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
     59 I GNXT'=0 D  ;
     60 . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
     61 . I (ZNUM="")&(ZMULT) D  ; SIBLING IS FIRST OF MULTIPLES
     62 . . N ZNUM S ZNUM=1 ;
     63 . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
     64 . E  D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
     65 Q
     66 ;
     67ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
     68 ;
     69 ; IF ZATT=1 THE ARRAY IS ADDED AS ATTRIBUTES
     70 ;
     71 N ZZI,ZZJ,ZZN
     72 S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
     73 I ZZI="" Q  ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
     74 S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
     75 S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
     76 I ZZI'["]" D  ; A SINGLETON
     77 . S ZZN=1
     78 E  D  ; THERE IS AN [x] OCCURANCE
     79 . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
     80 . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
     81 I ZZJ'="" D  ; TIME TO ADD THE VALUE
     82 . S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
     83 Q
     84 ;
     85PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
     86 ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
     87 ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
     88 ;Q $$EN^MXMLDOM(INXML)
     89 Q $$EN^MXMLDOM(INXML,"W")
     90 ;
     91ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
     92 N ZN
     93 ;I $$TAG(ZOID)["entry" B
     94 S ZN=$$NXTSIB(ZOID)
     95 I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
     96 Q 0
     97 ;
     98FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
     99 Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
     100 ;
     101PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
     102 Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
     103 ;
     104ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
     105 S HANDLE=C0SDOCID
     106 K @RTN
     107 D GETTXT^MXMLDOM("A")
     108 Q
     109 ;
     110TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
     111 ;I ZOID=149 B ;GPLTEST
     112 N X,Y
     113 S Y=""
     114 S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
     115 I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
     116 I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
     117 Q Y
     118 ;
     119NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
     120 Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
     121 ;
     122DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
     123 ;N ZT,ZN S ZT=""
     124 ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
     125 ;Q $G(@C0SDOM@(ZOID,"T",1))
     126 S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
     127 Q
     128 ;
     129OUTXML(ZRTN,INID,NO1ST) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
     130 ;
     131 S C0SDOCID=INID
     132 I '$D(NO1ST) S NO1ST=0 ; DO NOT SURPRESS THE <?xml tag generation
     133 D START^C0SMXMLB($$TAG(1),,"G",NO1ST)
     134 D NDOUT($$FIRST(1))
     135 D END^C0SMXMLB ;END THE DOCUMENT
     136 M @ZRTN=^TMP("MXMLBLD",$J)
     137 K ^TMP("MXMLBLD",$J)
     138 Q
     139 ;
     140NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
     141 N ZI S ZI=$$FIRST(ZOID)
     142 I ZI'=0 D  ; THERE IS A CHILD
     143 . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
     144 . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
     145 E  D  ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
     146 . ;W "DOING",ZOID,!
     147 . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
     148 . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
     149 . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
     150 I $$NXTSIB(ZOID)'=0 D  ; THERE IS A SIBLING
     151 . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
     152 Q
     153 ;
     154WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
     155 ;
     156 N GN,GN2
     157 D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
     158 S GN2=$NA(@GN@(1))
     159 W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
     160 Q
     161 ;
     162NARY2XML(ZGOUT,ZGIN) ; CREATE XML FROM AN NHIN ARRAY
     163 ; ZGOUT AND ZGIN ARE PASSED BY NAME
     164 N C0SDOCID
     165 W !,ZGOUT," ",ZGIN
     166 S C0SDOCID=$$DOMI(ZGIN) ; PUT IT INTO THE DOM
     167 D OUTXML(ZGOUT,C0SDOCID)
     168 Q
     169 ;
     170 ; EXAMPLE OF NHIN ARRAY FORMAT - THIS IS AN OUTPUT OF DOMO ABOVE WHEN RUN
     171 ; AGAINST THE OUTPUT OF THE GET^NHINV ROUTINE. (THIS IS NOT REAL PATIENT DATA)
     172 ;
     173 ;GNARY("med",1,"doses.dose@dose")=10
     174 ;GNARY("med",1,"doses.dose@noun")="TABLET"
     175 ;GNARY("med",1,"doses.dose@route")="PO"
     176 ;GNARY("med",1,"doses.dose@schedule")="QD"
     177 ;GNARY("med",1,"doses.dose@units")="MG"
     178 ;GNARY("med",1,"doses.dose@unitsPerDose")=1
     179 ;GNARY("med",1,"facility@code")=100
     180 ;GNARY("med",1,"facility@name")="VOE OFFICE INSTITUTION"
     181 ;GNARY("med",1,"form@value")="TAB"
     182 ;GNARY("med",1,"id@value")="1N;O"
     183 ;GNARY("med",1,"location@code")=5
     184 ;GNARY("med",1,"location@name")="3 WEST"
     185 ;GNARY("med",1,"name@value")="LISINOPRIL TAB"
     186 ;GNARY("med",1,"orderID@value")=294
     187 ;GNARY("med",1,"ordered@value")=3110531.001233
     188 ;GNARY("med",1,"orderingProvider@code")=63
     189 ;GNARY("med",1,"orderingProvider@name")="KING,MATTHEW MICHAEL"
     190 ;GNARY("med",1,"products.product.class@code")="ACE INHIBITORS"
     191 ;GNARY("med",1,"products.product.vaGeneric@code")=1990
     192 ;GNARY("med",1,"products.product.vaGeneric@name")="LISINOPRIL"
     193 ;GNARY("med",1,"products.product.vaGeneric@vuid")=4019380
     194 ;GNARY("med",1,"products.product.vaProduct@code")=8118
     195 ;GNARY("med",1,"products.product.vaProduct@name")="LISINOPRIL 10MG TAB"
     196 ;GNARY("med",1,"products.product.vaProduct@vuid")=4008593
     197 ;GNARY("med",1,"products.product@code")=6174
     198 ;GNARY("med",1,"products.product@name")="LISINOPRIL 10MG U/D"
     199 ;GNARY("med",1,"products.product@role")="D"
     200 ;GNARY("med",1,"sig")="10MG BY MOUTH EVERY DAY"
     201 ;GNARY("med",1,"sig@xml:space")="preserve"
     202 ;GNARY("med",1,"status@value")="active"
     203 ;GNARY("med",1,"type@value")="OTC"
     204 ;GNARY("med",1,"vaType@value")="N"
     205 ;
     206 ; DOMI is an extrinsic to insert NHIN ARRAY FORMAT arrays into the DOM
     207 ; it returns 0 or 1 based on success.
     208 ;
     209 ; INARY is passed by name and has the format shown above
     210 ; HANDLE is the document number in the DOM (both MXML and EWD DOMs will
     211 ; be supported eventually - initial implementation is for MXML
     212 ;
     213 ; PARENT is the node id or tag of the parent under which the DOM will
     214 ; be populated. If it is numeric, it is a node. If it is a string, the DOM
     215 ; will be searched to find the tag. If not found and there is no root,
     216 ; it will be inserted as the root. If not found and there is a root, it
     217 ; will be inserted under the root.
     218 ;
     219 ; For the above example the call would be OK=$$DOMI("GNARY",0,"results")
     220 ; because "results" is the root tag. Use OUTXML to render the xml from
     221 ; the DOM.
     222 ;
     223DOMI(INARY,HANDLE,PARENT) ; EXTRINSIC TO INSERT NHIN ARRAYS TO A DOM
     224 ;
     225 N ZPARNODE
     226 S (SUCCESS,LEVEL,LEVEL(0),NODE)=0
     227 I '$D(INARY) Q 0 ; NO ARRAY PASSED
     228 I '$D(HANDLE) S HANDLE=$$NEWDOM() ; MAKE A NEW DOM
     229 ;I PARENT="" S PARENT="root"
     230 I +$G(PARENT)>0 S ZPARNODE=PARENT ; WE HAVE BEEN PASSED A PARENT NODE ID
     231 E  I $L($G(PARENT))>0 D  ; TBD FIND THE PARENT IN THE DOM AND SET LEVEL
     232 . D STARTELE^MXMLDOM(PARENT) ; INSERT THE PARENT NODE
     233 . S ZPARNODE=1 ;
     234 ; WE NOW HAVE A HANDLE AND A PARENT NODE AND LEVEL HAS BEEN SET
     235 N ZEXARY
     236 D EXPAND("ZEXARY",INARY) ; EXPAND THE NHIN ARRAY
     237 D MAJOR("ZEXARY") ; PROCESS ALL THE NODES TO BE ADDED
     238 I $L($G(PARENT))>0 D ENDELE^MXMLDOM(PARENT) ; CLOSE OUT THE PARENT NODE
     239 Q HANDLE ; SUCCESS
     240 ;
     241MAJOR(ZARY) ; RECURSIVE ROUTINE FOR INTERMEDIATE NODES
     242 N ZI S ZI=""
     243 N ZTAG
     244 F  S ZI=$O(@ZARY@(ZI)) Q:ZI=""  D  ; FOR EACH SECTION
     245 . N ZELEADD S ZELEADD=0
     246 . I ZI["@" D  ; END NODE HAS NO VALUE, ONLY ATTRIBUTES
     247 . . S ZTAG=$P(ZI,"@",1) ; PULL OUT THE TAG
     248 . . K ZATT ; CLEAR OUT LAST ONE
     249 . . M ZATT=@ZARY@(ZI,1) ; GET ATTRIBUTE ARRAY
     250 . . D STARTELE^MXMLDOM(ZTAG,.ZATT) ; ADD THE NODE
     251 . . S ZELEADD=1 ; FLAG TO NOT ADD THE ELEMENT TWICE
     252 . I $O(@ZARY@(ZI,""))="" D  ;END NODE
     253 . . S ZTAG=ZI ; USE ZI FOR THE TAG
     254 . . I 'ZELEADD D STARTELE^MXMLDOM(ZTAG) ; ADD ELEMENT IF NOT THERE
     255 . . S ZELEADD=1 ; ADDED AN ELEMENT
     256 . . D CHAR^MXMLDOM($G(@ZARY@(ZI))) ; INSERT THE VALUE
     257 . I ZELEADD D  Q  ; NO MORE TO DO ON THIS LEVEL
     258 . . D ENDELE^MXMLDOM(ZTAG) ; CLOSE THE ELEMENT BEFORE LEAVING
     259 . N NEWARY ; INDENTED ARRAY
     260 . N ZN S ZN=0
     261 . F  S ZN=$O(@ZARY@(ZI,ZN)) Q:ZN=""  D  ; FOR EACH MULTIPLE
     262 . . D STARTELE^MXMLDOM(ZI) ; ADD THE INTERMEDIATE TAG
     263 . . S NEWARY=$NA(@ZARY@(ZI,ZN)) ; INDENT THE ARRAY
     264 . . D MAJOR(NEWARY) ; RECURSE FOR INDENTED ARRAY
     265 . . D ENDELE^MXMLDOM(ZI) ; END THE INTERMEDIATE TAG
     266 Q
     267 ;
     268EXPAND(ZZOUT,ZZIN) ; EXPANDS NHIN ARRAY FORMAT TO AN EXPANDED
     269 ; CONSISTENT FORMAT
     270 ; GNARY("patient",1,"facilities[2].facility@code")="050"
     271 ; becomes G2ARY("patient",1,"facilities",2,"facility@",1,"code")="050"
     272 ; for easier processing (this is fileman format genius)
     273 ; basically removes the dot notation from the strings
     274 ;
     275 N ZZI
     276 S ZZI=""
     277 F  S ZZI=$O(@ZZIN@(ZZI)) Q:ZZI=""  D  ;
     278 . N ZZN S ZZN=0
     279 . F  S ZZN=$O(@ZZIN@(ZZI,ZZN)) Q:ZZN=""  D  ;
     280 . . N ZZS S ZZS=""
     281 . . N GA ;PUSH STACK
     282 . . F  S ZZS=$O(@ZZIN@(ZZI,ZZN,ZZS)) Q:ZZS=""  D  ;
     283 . . . K GA ; NEW STACK
     284 . . . D PUSH^C0SXPATH("GA",ZZI_"^"_ZZN) ; PUSH PARENT
     285 . . . N ZZV ; PLACE TO STASH THE VALUE
     286 . . . S ZZV=@ZZIN@(ZZI,ZZN,ZZS) ; VALUE
     287 . . . W !,"VALUE:",ZZV
     288 . . . N GK ; COUNTER
     289 . . . F GK=1:1:$L(ZZS,".") D  ; FOR EACH INTERMEDIATE NODE
     290 . . . . N ZZN2 S ZZN2=1 ; DEFAULT IF NO [X]
     291 . . . . N GM S GM=$P(ZZS,".",GK) ; TAG
     292 . . . . I GM["[" D  ; IT'S A MULTIPLE
     293 . . . . . S ZZN2=$P($P(GM,"[",2),"]",1) ; PULL OUT THE NUMBER
     294 . . . . . S GM=$P(GM,"[",1) ; PULL OUT THE TAG
     295 . . . . I GM["@" D  ; IT'S GOT ATTRIBUTES
     296 . . . . . N GM2 S GM2=$P(GM,"@",2) ; PULLOUT THE ATTRIBUTE NAME
     297 . . . . . D PUSH^C0SXPATH("GA",$P(GM,"@",1)_"@"_"^"_ZZN2) ; PUSH THE TAG
     298 . . . . . D PUSH^C0SXPATH("GA",GM2_"^"_ZZN2)
     299 . . . . E  D PUSH^C0SXPATH("GA",GM_"^"_ZZN2) ;
     300 . . . S GA(GA(0))=$P(GA(GA(0)),"^",1)_"^" ; GET RID OF THE LAST "1"
     301 . . . N GZI S GZI="" ; STRING FOR THE INDEX
     302 . . . F GK=1:1:GA(0) D  ; TIME TO REVERSE POP THE TAGS
     303 . . . . S GM=$P(GA(GK),"^",1) ; THE TAG
     304 . . . . S ZZN2=$P(GA(GK),"^",2) ; THE NUMBER IF ANY
     305 . . . . I ZZN2="" S GZI=GZI_""""_GM_"""" ; FOR THE LAST ONE
     306 . . . . E  S GZI=GZI_""""_GM_""""_","_ZZN2_"," ; FOR THE REST
     307 . . . S GZI2=ZZOUT_"("_GZI_")" ; INCLUDE THE ARRAY NAME
     308 . . . W !,GZI
     309 . . . S @GZI2=ZZV ; REMEMBER THE VALUE?
     310 Q
     311 ;
     312NEWDOM() ; extrinsic which creates a new DOM and returns the HANDLE
     313 N CBK,SUCCESS,LEVEL,NODE,HANDLE
     314 K ^TMP("MXMLERR",$J)
     315 L +^TMP("MXMLDOM",$J):5
     316 E  Q 0
     317 S HANDLE=$O(^TMP("MXMLDOM",$J,""),-1)+1,^(HANDLE)=""
     318 L -^TMP("MXMLDOM",$J)
     319 Q HANDLE
     320 ;
  • smart/trunk/p/C0SLAB.m

    r1540 r1569  
    1 C0SLAB    ; GPL - Smart Lab Processing ;4/15/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22         ; sample VistA NHIN lab result
    23         ;
    24         ;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
    25         ;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
    26         ;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
    27         ;^TMP("C0STBL",32,"lab",8,"facility@code")=100
    28         ;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
    29         ;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
    30         ;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
    31         ;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
    32         ;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
    33         ;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
    34         ;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
    35         ;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
    36         ;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
    37         ;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
    38         ;^TMP("C0STBL",32,"lab",8,"result@value")=178
    39         ;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
    40         ;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
    41         ;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
    42         ;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
    43         ;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
    44         ;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
    45         ;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
    46         ;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
    47         ;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
    48         ;
    49         ; sample Smart lab result triples
    50         ;
    51         ;G("loinc:29571-7","dcterms:identifier")="29571-7"
    52         ;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
    53         ;G("loinc:29571-7","rdf:type")="sp:Code"
    54         ;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
    55         ;G("loinc:38478-4","dcterms:identifier")="38478-4"
    56         ;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
    57         ;G("loinc:38478-4","rdf:type")="sp:Code"
    58         ;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
    59         ;G("qqWZZIew993","rdf:type")="sp:Attribution"
    60         ;G("qqWZZIew993","sp:startDate")="2007-04-21"
    61         ;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
    62         ;G("qqWZZIew994","sp:value")="Normal"
    63         ;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
    64         ;G("qqWZZIew995","rdf:type")="sp:CodedValue"
    65         ;G("qqWZZIew995","sp:code")="loinc:38478-4"
    66         ;G("qqWZZIew997","rdf:type")="sp:Attribution"
    67         ;G("qqWZZIew997","sp:startDate")="2007-09-08"
    68         ;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
    69         ;G("qqWZZIew998","sp:value")="Normal"
    70         ;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
    71         ;G("qqWZZIew999","rdf:type")="sp:CodedValue"
    72         ;G("qqWZZIew999","sp:code")="loinc:29571-7"
    73         ;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
    74         ;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
    75         ;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
    76         ;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
    77         ;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
    78         ;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
    79         ;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
    80         ;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
    81         ;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
    82         ;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
    83         ;
    84         ;
    85         ;  another Smart example, this one with sp:quantitativeResult
    86         ;
    87         ;G("loinc:786-4","dcterms:identifier")="786-4"
    88         ;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
    89         ;G("loinc:786-4","rdf:type")="sp:Code"
    90         ;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
    91         ;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
    92         ;G("nodeID:4439","sp:unit")="g/dL"
    93         ;G("nodeID:4439","sp:value")=36.6
    94         ;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
    95         ;G("nodeID:4613","sp:unit")="g/dL"
    96         ;G("nodeID:4613","sp:value")=32
    97         ;G("nodeID:4672","rdf:type")="sp:Attribution"
    98         ;G("nodeID:4672","sp:startDate")="2005-03-10"
    99         ;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
    100         ;G("nodeID:4866","sp:unit")="g/dL"
    101         ;G("nodeID:4866","sp:value")=36
    102         ;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
    103         ;G("nodeID:4871","rdf:type")="sp:CodedValue"
    104         ;G("nodeID:4871","sp:code")="loinc:786-4"
    105         ;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
    106         ;G("nodeID:5221","sp:normalRange")="nodeID:5282"
    107         ;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
    108         ;G("nodeID:5282","rdf:type")="sp:ValueRange"
    109         ;G("nodeID:5282","sp:maximum")="nodeID:4866"
    110         ;G("nodeID:5282","sp:minimum")="nodeID:4613"
    111         ;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
    112         ;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
    113         ;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
    114         ;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
    115         ;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
    116         ;
    117 LAB(GRTN,C0SARY)        ; GRTN, passed by reference,
    118         ; is the return name of the graph created. "" if none
    119         ; C0SARY is passed in by reference and is the NHIN array of lab
    120         ;
    121         I $O(C0SARY("lab",""))="" D  Q  ;
    122         . I $D(DEBUG) W !,"No Labs"
    123         S GRTN="" ; default to no labs
    124         N C0SGRF
    125         S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
    126         I $D(DEBUG) W !,"Processing ",C0SGRF
    127         D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
    128         D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
    129         N FARY S FARY="C0XFARY"
    130         D USEFARY^C0XF2N(FARY)
    131         D VOCINIT^C0XUTIL
    132         ;
    133         D STARTADD^C0XF2N ; initialize to create triples
    134         ;
    135         N ZI S ZI=""
    136         F  S ZI=$O(C0SARY("lab",ZI)) Q:ZI=""  D  ;
    137         . N LRN,ZR ; ZR is the local array for building the new triples
    138         . S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
    139         . ;
    140         . N RSLTID ; unique Id for this lab result
    141         . S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
    142         . ;
    143         . ; i don't like this because the same labs result gets a
    144         . ; different ID every time it's reported. Can't trace it back to VistA
    145         . ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
    146         . ; .. either that or store an OID with the lab result - but that
    147         . ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
    148         . ;
    149         . N LOINC S LOINC=$G(@LRN@("loinc@value"))
    150         . I LOINC="" D  Q  ;
    151         . . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
    152         . N LABTST S LABTST=$G(@LRN@("test@value"))
    153         . I $D(DEBUG) D  ;
    154         . . W !,"Processing Lab Result ",RSLTID
    155         . . W !,"test: ",LABTST
    156         . . W !,"loinc: ",LOINC
    157         . ;
    158         . ; first do the base result graph
    159         . ;
    160         . S ZR("rdf:type")="sp:LabResult"
    161         . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
    162         . ; ie /vista/smart/99912345/lab_results
    163         . ;
    164         . N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
    165         . S ZR("sp:labName")=LABNAME
    166         . ;
    167         . N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
    168         . S ZR("sp:narrativeResult")=NARRSLT
    169         . ;
    170         . N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
    171         . S ZR("sp:quantitativeResult")=QNTRSLT
    172         . ;
    173         . N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
    174         . S ZR("sp:specimenCollected")=SPECCOLL
    175         . ;
    176         . D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
    177         . K ZR ; clean up
    178         . ;
    179         . ; create the narrative result graph
    180         . ;
    181         . N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D  ; H OR L
    182         . I IVAL'=""
    183         . . S ZR("rdf:type")="sp:NarrativeResult"
    184         . . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
    185         . . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
    186         . . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
    187         . . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
    188         . . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
    189         . . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
    190         . . K ZR
    191         . ;
    192         . ; create the quantitative result graph
    193         . ;
    194         . S ZR("rdf:type")="sp:QuantitativeResult"
    195         . N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
    196         . N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
    197         . N HASNORMAL S HASNORMAL=0
    198         . I $G(@LRN@("high@value"))'="" S HASNORMAL=1
    199         . I HASNORMAL S ZR("sp:normalRange")=NORMNM
    200         . S ZR("sp:valueAndUnit")=VUNM
    201         . D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
    202         . K ZR
    203         . ;
    204         . ; create the normal range graph
    205         . ;
    206         . I HASNORMAL D  ;
    207         . . S ZR("rdf:type")="sp:ValueRange"
    208         . . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
    209         . . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
    210         . . S ZR("sp:maximum")=MAXNM
    211         . . S ZR("sp:minimum")=MINNM
    212         . . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
    213         . . K ZR
    214         . . ;
    215         . . ; create the maximum graph
    216         . . ;
    217         . . S ZR("rdf:type")="sp:ValueAndUnit"
    218         . . S ZR("sp:unit")=$G(@LRN@("units@value"))
    219         . . S ZR("sp:value")=$G(@LRN@("high@value"))
    220         . . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
    221         . . K ZR
    222         . . ;
    223         . . ; create the minimum graph
    224         . . ;
    225         . . S ZR("rdf:type")="sp:ValueAndUnit"
    226         . . S ZR("sp:unit")=$G(@LRN@("units@value"))
    227         . . S ZR("sp:value")=$G(@LRN@("low@value"))
    228         . . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
    229         . . K ZR
    230         . ;
    231         . ; create the value and unit graph
    232         . ;
    233         . S ZR("rdf:type")="sp:ValueAndUnit"
    234         . S ZR("sp:unit")=$G(@LRN@("units@value"))
    235         . I ZR("sp:unit")="" S ZR("sp:unit")=$G(@LRN@("test@value"))
    236         . S ZR("sp:value")=$G(@LRN@("result@value"))
    237         . D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
    238         . K ZR
    239         . ;
    240         . ; create specimen collected graph
    241         . ;
    242         . S ZR("rdf:type")="sp:Attribution"
    243         . S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
    244         . D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
    245         . K ZR
    246         . ;
    247         . ; create lab name graph - this contains the test name and code
    248         . ;
    249         . I LOINC'="" D  ;
    250         . . S ZR("rdf:type")="sp:CodedValue"
    251         . . S ZR("dcterms:title")=LABTST
    252         . . N LOINCNM S LOINCNM="loinc:"_LOINC
    253         . . S ZR("sp:code")="loinc:"_LOINC
    254         . . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
    255         . . K ZR
    256         . . S ZR("dcterms:identifier")=LOINC
    257         . . S ZR("dcterms:title")=LABTST
    258         . . S ZR("rdf:type")="sp:Code"
    259         . . S ZR("sp:system")="http://loinc.org/codes/"
    260         . . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
    261         . . K ZR
    262         . ;
    263         . ; that's all for now folks (there is more to do like reference ranges
    264         . ; and result values)
    265         . ;
    266         D BULKLOAD^C0XF2N(.C0XFDA)
    267         S GRTN=C0SGRF
    268         Q
    269         ;
    270 SAMPLE  ; import sample lab tests to the triplestore
    271         N GN
    272         S GN=$NA(^rdf("lab_results"))
    273         D INSRDF^C0XF2N(GN,"/smart/lab/samples")
    274         Q
    275         ;
     1C0SLAB   ; GPL - Smart Lab Processing ;4/15/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22 ; sample VistA NHIN lab result
     23 ;
     24 ;^TMP("C0STBL",32,"lab",8,"collected@value")=3110626.16
     25 ;^TMP("C0STBL",32,"lab",8,"comment")="Report Released Date/Time: Jun 26, 2011@19:00"
     26 ;^TMP("C0STBL",32,"lab",8,"comment@xml:space")="preserve"
     27 ;^TMP("C0STBL",32,"lab",8,"facility@code")=100
     28 ;^TMP("C0STBL",32,"lab",8,"facility@name")="VOE OFFICE INSTITUTION"
     29 ;^TMP("C0STBL",32,"lab",8,"groupName@value")="CH 0626 47"
     30 ;^TMP("C0STBL",32,"lab",8,"high@value")=" 101"
     31 ;^TMP("C0STBL",32,"lab",8,"id@value")="CH;6889372.84;67003"
     32 ;^TMP("C0STBL",32,"lab",8,"interpretation@value")="H"
     33 ;^TMP("C0STBL",32,"lab",8,"labOrderID@value")=336
     34 ;^TMP("C0STBL",32,"lab",8,"localName@value")="FBLDGLU"
     35 ;^TMP("C0STBL",32,"lab",8,"loinc@value")="14771-0"
     36 ;^TMP("C0STBL",32,"lab",8,"low@value")="69 "
     37 ;^TMP("C0STBL",32,"lab",8,"orderID@value")=807
     38 ;^TMP("C0STBL",32,"lab",8,"result@value")=178
     39 ;^TMP("C0STBL",32,"lab",8,"resulted@value")=3110626.190006
     40 ;^TMP("C0STBL",32,"lab",8,"sample@value")="SERUM"
     41 ;^TMP("C0STBL",32,"lab",8,"specimen@code")="0X500"
     42 ;^TMP("C0STBL",32,"lab",8,"specimen@name")="SERUM"
     43 ;^TMP("C0STBL",32,"lab",8,"status@value")="completed"
     44 ;^TMP("C0STBL",32,"lab",8,"test@value")="FASTING BLOOD GLUCOSE"
     45 ;^TMP("C0STBL",32,"lab",8,"type@value")="CH"
     46 ;^TMP("C0STBL",32,"lab",8,"units@value")="MG/DL"
     47 ;^TMP("C0STBL",32,"lab",8,"vuid@value")=4656342
     48 ;
     49 ; sample Smart lab result triples
     50 ;
     51 ;G("loinc:29571-7","dcterms:identifier")="29571-7"
     52 ;G("loinc:29571-7","dcterms:title")="Phe DBS Ql"
     53 ;G("loinc:29571-7","rdf:type")="sp:Code"
     54 ;G("loinc:29571-7","sp:system")="http://loinc.org/codes/"
     55 ;G("loinc:38478-4","dcterms:identifier")="38478-4"
     56 ;G("loinc:38478-4","dcterms:title")="Biotinidase DBS Ql"
     57 ;G("loinc:38478-4","rdf:type")="sp:Code"
     58 ;G("loinc:38478-4","sp:system")="http://loinc.org/codes/"
     59 ;G("qqWZZIew993","rdf:type")="sp:Attribution"
     60 ;G("qqWZZIew993","sp:startDate")="2007-04-21"
     61 ;G("qqWZZIew994","rdf:type")="sp:NarrativeResult"
     62 ;G("qqWZZIew994","sp:value")="Normal"
     63 ;G("qqWZZIew995","dcterms:title")="Biotinidase DBS Ql"
     64 ;G("qqWZZIew995","rdf:type")="sp:CodedValue"
     65 ;G("qqWZZIew995","sp:code")="loinc:38478-4"
     66 ;G("qqWZZIew997","rdf:type")="sp:Attribution"
     67 ;G("qqWZZIew997","sp:startDate")="2007-09-08"
     68 ;G("qqWZZIew998","rdf:type")="sp:NarrativeResult"
     69 ;G("qqWZZIew998","sp:value")="Normal"
     70 ;G("qqWZZIew999","dcterms:title")="Phe DBS Ql"
     71 ;G("qqWZZIew999","rdf:type")="sp:CodedValue"
     72 ;G("qqWZZIew999","sp:code")="loinc:29571-7"
     73 ;G("smart:99912345/lab_results/3d9b39249193","rdf:type")="sp:LabResult"
     74 ;G("smart:99912345/lab_results/3d9b39249193","sp:belongsTo")="smart:99912345"
     75 ;G("smart:99912345/lab_results/3d9b39249193","sp:labName")="qqWZZIew995"
     76 ;G("smart:99912345/lab_results/3d9b39249193","sp:narrativeResult")="qqWZZIew994"
     77 ;G("smart:99912345/lab_results/3d9b39249193","sp:specimenCollected")="qqWZZIew993"
     78 ;G("smart:99912345/lab_results/426c7adc4f54","rdf:type")="sp:LabResult"
     79 ;G("smart:99912345/lab_results/426c7adc4f54","sp:belongsTo")="smart:99912345"
     80 ;G("smart:99912345/lab_results/426c7adc4f54","sp:labName")="qqWZZIew999"
     81 ;G("smart:99912345/lab_results/426c7adc4f54","sp:narrativeResult")="qqWZZIew998"
     82 ;G("smart:99912345/lab_results/426c7adc4f54","sp:specimenCollected")="qqWZZIew997"
     83 ;
     84 ;
     85 ;  another Smart example, this one with sp:quantitativeResult
     86 ;
     87 ;G("loinc:786-4","dcterms:identifier")="786-4"
     88 ;G("loinc:786-4","dcterms:title")="MCHC RBC Auto-mCnc"
     89 ;G("loinc:786-4","rdf:type")="sp:Code"
     90 ;G("loinc:786-4","sp:system")="http://loinc.org/codes/"
     91 ;G("nodeID:4439","rdf:type")="sp:ValueAndUnit"
     92 ;G("nodeID:4439","sp:unit")="g/dL"
     93 ;G("nodeID:4439","sp:value")=36.6
     94 ;G("nodeID:4613","rdf:type")="sp:ValueAndUnit"
     95 ;G("nodeID:4613","sp:unit")="g/dL"
     96 ;G("nodeID:4613","sp:value")=32
     97 ;G("nodeID:4672","rdf:type")="sp:Attribution"
     98 ;G("nodeID:4672","sp:startDate")="2005-03-10"
     99 ;G("nodeID:4866","rdf:type")="sp:ValueAndUnit"
     100 ;G("nodeID:4866","sp:unit")="g/dL"
     101 ;G("nodeID:4866","sp:value")=36
     102 ;G("nodeID:4871","dcterms:title")="MCHC RBC Auto-mCnc"
     103 ;G("nodeID:4871","rdf:type")="sp:CodedValue"
     104 ;G("nodeID:4871","sp:code")="loinc:786-4"
     105 ;G("nodeID:5221","rdf:type")="sp:QuantitativeResult"
     106 ;G("nodeID:5221","sp:normalRange")="nodeID:5282"
     107 ;G("nodeID:5221","sp:valueAndUnit")="nodeID:4439"
     108 ;G("nodeID:5282","rdf:type")="sp:ValueRange"
     109 ;G("nodeID:5282","sp:maximum")="nodeID:4866"
     110 ;G("nodeID:5282","sp:minimum")="nodeID:4613"
     111 ;G("smart:1540505/lab_results/2fc100850766","rdf:type")="sp:LabResult"
     112 ;G("smart:1540505/lab_results/2fc100850766","sp:belongsTo")="smart:1540505"
     113 ;G("smart:1540505/lab_results/2fc100850766","sp:labName")="nodeID:4871"
     114 ;G("smart:1540505/lab_results/2fc100850766","sp:quantitativeResult")="nodeID:5221"
     115 ;G("smart:1540505/lab_results/2fc100850766","sp:specimenCollected")="nodeID:4672"
     116 ;
     117LAB(GRTN,C0SARY) ; GRTN, passed by reference,
     118 ; is the return name of the graph created. "" if none
     119 ; C0SARY is passed in by reference and is the NHIN array of lab
     120 ;
     121 I $O(C0SARY("lab",""))="" D  Q  ;
     122 . I $D(DEBUG) W !,"No Labs"
     123 S GRTN="" ; default to no labs
     124 N C0SGRF
     125 S C0SGRF="vistaSmart:"_ZPATID_"/lab_results"
     126 I $D(DEBUG) W !,"Processing ",C0SGRF
     127 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
     128 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
     129 N FARY S FARY="C0XFARY"
     130 D USEFARY^C0XF2N(FARY)
     131 D VOCINIT^C0XUTIL
     132 ;
     133 D STARTADD^C0XF2N ; initialize to create triples
     134 ;
     135 N ZI S ZI=""
     136 F  S ZI=$O(C0SARY("lab",ZI)) Q:ZI=""  D  ;
     137 . N LRN,ZR ; ZR is the local array for building the new triples
     138 . S LRN=$NA(C0SARY("lab",ZI)) ; base for values in this lab result
     139 . ;
     140 . N RSLTID ; unique Id for this lab result
     141 . S RSLTID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
     142 . ;
     143 . ; i don't like this because the same labs result gets a
     144 . ; different ID every time it's reported. Can't trace it back to VistA
     145 . ; I'd rather be using id@value ie "id@value")="CH;6889372.84;67003"
     146 . ; .. either that or store an OID with the lab result - but that
     147 . ; will have to wait for the redesign of file 60.. - gpl 4/16/2012
     148 . ;
     149 . N LOINC S LOINC=$G(@LRN@("loinc@value"))
     150 . I LOINC="" D  Q  ;
     151 . . I $D(DEBUG) W !,"NO LOINC VALUE, SKIPPING"
     152 . N LABTST S LABTST=$G(@LRN@("test@value"))
     153 . I $D(DEBUG) D  ;
     154 . . W !,"Processing Lab Result ",RSLTID
     155 . . W !,"test: ",LABTST
     156 . . W !,"loinc: ",LOINC
     157 . ;
     158 . ; first do the base result graph
     159 . ;
     160 . S ZR("rdf:type")="sp:LabResult"
     161 . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's lab results
     162 . ; ie /vista/smart/99912345/lab_results
     163 . ;
     164 . N LABNAME S LABNAME=$$ANONS^C0XF2N ; new node for lab name
     165 . S ZR("sp:labName")=LABNAME
     166 . ;
     167 . N NARRSLT S NARRSLT=$$ANONS^C0XF2N ; new node for narrative result
     168 . S ZR("sp:narrativeResult")=NARRSLT
     169 . ;
     170 . N QNTRSLT S QNTRSLT=$$ANONS^C0XF2N ; new node for narrative result
     171 . S ZR("sp:quantitativeResult")=QNTRSLT
     172 . ;
     173 . N SPECCOLL S SPECCOLL=$$ANONS^C0XF2N ; new node for specimen collected
     174 . S ZR("sp:specimenCollected")=SPECCOLL
     175 . ;
     176 . D ADDINN^C0XF2N(C0SGRF,RSLTID,.ZR) ; addIfNotNull the triples
     177 . K ZR ; clean up
     178 . ;
     179 . ; create the narrative result graph
     180 . ;
     181 . N IVAL S IVAL=$G(@LRN@("interpretation@value"))'="" D  ; H OR L
     182 . I IVAL'=""
     183 . . S ZR("rdf:type")="sp:NarrativeResult"
     184 . . S ZR("sp:value")=$G(@LRN@("interpretation@value")) ; H or L
     185 . . I ZR("sp:value")="L" S ZR("sp:value")="abnormal"
     186 . . I ZR("sp:value")="H" S ZR("sp:value")="abnormal"
     187 . . I ZR("sp:value")="HH" S ZR("sp:value")="critical"
     188 . . I ZR("sp:value")="LL" S ZR("sp:value")="critical"
     189 . . D ADDINN^C0XF2N(C0SGRF,NARRSLT,.ZR)
     190 . . K ZR
     191 . ;
     192 . ; create the quantitative result graph
     193 . ;
     194 . S ZR("rdf:type")="sp:QuantitativeResult"
     195 . N NORMNM S NORMNM=$$ANONS^C0XF2N ; new node for normal range graph
     196 . N VUNM S VUNM=$$ANONS^C0XF2N ; new node for value and unit graph
     197 . N HASNORMAL S HASNORMAL=0
     198 . I $G(@LRN@("high@value"))'="" S HASNORMAL=1
     199 . I HASNORMAL S ZR("sp:normalRange")=NORMNM
     200 . S ZR("sp:valueAndUnit")=VUNM
     201 . D ADDINN^C0XF2N(C0SGRF,QNTRSLT,.ZR)
     202 . K ZR
     203 . ;
     204 . ; create the normal range graph
     205 . ;
     206 . I HASNORMAL D  ;
     207 . . S ZR("rdf:type")="sp:ValueRange"
     208 . . N MAXNM S MAXNM=$$ANONS^C0XF2N ; new node for maximum graph
     209 . . N MINNM S MINNM=$$ANONS^C0XF2N ; new node for minimum graph
     210 . . S ZR("sp:maximum")=MAXNM
     211 . . S ZR("sp:minimum")=MINNM
     212 . . D ADDINN^C0XF2N(C0SGRF,NORMNM,.ZR)
     213 . . K ZR
     214 . . ;
     215 . . ; create the maximum graph
     216 . . ;
     217 . . S ZR("rdf:type")="sp:ValueAndUnit"
     218 . . S ZR("sp:unit")=$G(@LRN@("units@value"))
     219 . . S ZR("sp:value")=$G(@LRN@("high@value"))
     220 . . D ADDINN^C0XF2N(C0SGRF,MAXNM,.ZR)
     221 . . K ZR
     222 . . ;
     223 . . ; create the minimum graph
     224 . . ;
     225 . . S ZR("rdf:type")="sp:ValueAndUnit"
     226 . . S ZR("sp:unit")=$G(@LRN@("units@value"))
     227 . . S ZR("sp:value")=$G(@LRN@("low@value"))
     228 . . D ADDINN^C0XF2N(C0SGRF,MINNM,.ZR)
     229 . . K ZR
     230 . ;
     231 . ; create the value and unit graph
     232 . ;
     233 . S ZR("rdf:type")="sp:ValueAndUnit"
     234 . S ZR("sp:unit")=$G(@LRN@("units@value"))
     235 . I ZR("sp:unit")="" S ZR("sp:unit")="{unknown}" ;$G(@LRN@("test@value"))
     236 . S ZR("sp:value")=$G(@LRN@("result@value"))
     237 . D ADDINN^C0XF2N(C0SGRF,VUNM,.ZR)
     238 . K ZR
     239 . ;
     240 . ; create specimen collected graph
     241 . ;
     242 . S ZR("rdf:type")="sp:Attribution"
     243 . S ZR("sp:startDate")=$$SPDATE^C0SUTIL($G(@LRN@("collected@value")))
     244 . D ADDINN^C0XF2N(C0SGRF,SPECCOLL,.ZR)
     245 . K ZR
     246 . ;
     247 . ; create lab name graph - this contains the test name and code
     248 . ;
     249 . I LOINC'="" D  ;
     250 . . S ZR("rdf:type")="sp:CodedValue"
     251 . . S ZR("dcterms:title")=LABTST
     252 . . N LOINCNM S LOINCNM="loinc:"_LOINC
     253 . . S ZR("sp:code")="loinc:"_LOINC
     254 . . D ADDINN^C0XF2N(C0SGRF,LABNAME,.ZR)
     255 . . K ZR
     256 . . S ZR("dcterms:identifier")=LOINC
     257 . . S ZR("dcterms:title")=LABTST
     258 . . S ZR("rdf:type")="sp:Code"
     259 . . S ZR("sp:system")="http://loinc.org/codes/"
     260 . . D ADDINN^C0XF2N(C0SGRF,LOINCNM,.ZR)
     261 . . K ZR
     262 . ;
     263 . ; that's all for now folks (there is more to do like reference ranges
     264 . ; and result values)
     265 . ;
     266 D BULKLOAD^C0XF2N(.C0XFDA)
     267 S GRTN=C0SGRF
     268 Q
     269 ;
     270SAMPLE ; import sample lab tests to the triplestore
     271 N GN
     272 S GN=$NA(^rdf("lab_results"))
     273 D INSRDF^C0XF2N(GN,"/smart/lab/samples")
     274 Q
     275 ;
  • smart/trunk/p/C0SMART.m

    r1540 r1569  
    1 C0SMART   ; GPL - Smart Container Entry Points;2/22/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21 EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG)        ; return a Smart RDF file section ZTYP
    22         ;  for patient ZPATID; ZFORM defaults to rdf
    23         ; ZRTN is passed by reference
    24         ; For now, ZPATID is the DFN
    25         ;
    26         I '$D(ZFORM) S ZFORM="rdf"
    27         K ZRTN ; CLEAN RETURN
    28         N C0SARY
    29         I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
    30         E  D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
    31         I $G(C0SARY("patient",1,"id@value"))'=ZPATID D  Q  ;
    32         . W !,"Error Retreiving Patient Record"
    33         ;
    34         K C0XFDA
    35         ;
    36         N C0SGR ; graph
    37         ;
    38         ; processing table
    39         ;
    40         N C0SCTRL
    41         S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
    42         S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
    43         S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
    44         S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
    45         ;
    46         I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q  ;
    47         N ZX
    48         S ZX=C0SCTRL(ZTYP)
    49         X ZX ;
    50         ;
    51         I '$D(C0SGR) Q  ;
    52         ;
    53         D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
    54         ;
    55         Q
    56         ;
     1C0SMART   ; GPL - Smart Container Entry Points;2/22/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21EN(ZRTN,ZPATID,ZTYP,ZFORM,DEBUG) ; return a Smart RDF file section ZTYP
     22 ;  for patient ZPATID; ZFORM defaults to rdf
     23 ; ZRTN is passed by reference
     24 ; For now, ZPATID is the DFN
     25 ;
     26 I '$D(ZFORM) S ZFORM="rdf"
     27 K ZRTN ; CLEAN RETURN
     28 N C0SARY
     29 I ZTYP="patient" D EN^C0SNHIN(.C0SARY,ZPATID,"patient")
     30 E  D EN^C0SNHIN(.C0SARY,ZPATID,"patient;"_ZTYP)
     31 I $G(C0SARY("patient",1,"id@value"))'=ZPATID D  Q  ;
     32 . W !,"Error Retreiving Patient Record"
     33 ;
     34 K C0XFDA
     35 ;
     36 N C0SGR ; graph
     37 ;
     38 ; processing table
     39 ;
     40 N C0SCTRL
     41 S C0SCTRL("med")="D MED^C0SMED(.C0SGR,.C0SARY)"
     42 S C0SCTRL("patient")="D PATIENT^C0SDEM(.C0SGR,.C0SARY)"
     43 S C0SCTRL("lab")="D LAB^C0SLAB(.C0SGR,.C0SARY)"
     44 S C0SCTRL("problem")="D PROB^C0SPROB2(.C0SGR,.C0SARY)"
     45 ;
     46 I '$D(C0SCTRL(ZTYP)) W !,ZTYP," ","Not Supported" Q  ;
     47 N ZX
     48 S ZX=C0SCTRL(ZTYP)
     49 X ZX ;
     50 ;
     51 I '$D(C0SGR) Q  ;
     52 ;
     53 D getGraph^C0XGET1(.ZRTN,C0SGR,ZFORM)
     54 ;
     55 Q
     56 ;
  • smart/trunk/p/C0SMED.m

    r1540 r1569  
    1 C0SMED    ; GPL - Smart Meds Processing ;2/22/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22 MED(GRTN,C0SARY)        ; GRTN, passed by reference,
    23         ; is the return name of the graph created. "" if none
    24         ; C0SARY is passed in by reference and is the NHIN array of meds
    25         ;
    26         I $O(C0SARY("med",""))="" D  Q  ;
    27         . I $D(DEBUG) W !,"No Meds"
    28         S GRTN="" ; default to no meds
    29         N C0SGRF
    30         S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
    31         I $D(DEBUG) W !,"Processing ",C0SGRF
    32         D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
    33         N MEDTRP ; MEDS TRIPLES
    34         D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
    35         N FARY S FARY="C0XFARY"
    36         D USEFARY^C0XF2N(FARY)
    37         D VOCINIT^C0XUTIL
    38         ;
    39         N DUPCHK S DUPCHK="" ; check for no duplicates
    40         N ZI S ZI=""
    41         F  S ZI=$O(C0SARY("med",ZI)) Q:ZI=""  D  ;
    42         . N SDATE,SDTMP
    43         . I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D  Q  ;
    44         . . I $D(DEBUG) W !,"Expired Mediation, Skipping"
    45         . I $G(COSARY("med",ZI,"vaType@value"))="I" D  Q  ;
    46         . . I $D(DEBUG) W !,"Inpatient Med, skipping"
    47         . I $G(COSARY("med",ZI,"vaType@value"))="V" D  Q  ;
    48         . . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
    49         . ;
    50         . S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
    51         . I SDTMP="" D  ;
    52         . . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
    53         . S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
    54         . S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
    55         . I SDATE="" S SDATE="UNKNOWN"
    56         . N DNAME,VUID,DCODE,RXNORM,SIG
    57         . S DNAME=$G(C0SARY("med",ZI,"name@value"))
    58         . I DNAME="" D  ;
    59         . . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
    60         . S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
    61         . S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
    62         . I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
    63         . S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
    64         . I $P(RXNORM,"^",2)="RXNORM" D  ;
    65         . . S RXVER=$P(RXNORM,"^",3)
    66         . . S RXNORM=$P(RXNORM,"^",1)
    67         . E  D  Q  ;
    68         . . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
    69         . . I $D(DEBUG) W !,RXNORM
    70         . I DNAME="" D  Q  ;
    71         . . I $D(DEBUG) W !,"Error No Drug Name"
    72         . S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
    73         . I +$D(DUPCHK(MEDGRF)) D  Q  ; NO DUPS ALLOWED
    74         . . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
    75         . S DUPCHK(MEDGRF)=""
    76         . I $D(DEBUG) D  ;
    77         . . W !,"Processing Medication ",MEDGRF
    78         . . W !,DNAME
    79         . . W !,RXNORM
    80         . S SIG=$G(C0SARY("med",ZI,"sig"))
    81         . I SIG["|" D  ;
    82         . . N SIGTMP
    83         . . S SIGTMP=SIG
    84         . . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
    85         . . I DNAME["FREE TXT" D  ; eRx free text drug, get drug name from sig
    86         . . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
    87         . K C0XFARY
    88         . D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
    89         . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
    90         . N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
    91         . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
    92         . I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
    93         . N NQTY,NQTY2,NFREQ,NFREQ2
    94         . S NQTY=$$ANONS^C0XF2N ; anonomous subject
    95         . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
    96         . S NQTY2=$$ANONS^C0XF2N ; anonomous subject
    97         . D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
    98         . N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
    99         . I DOSE="" S DOSE="UNKNOWN"
    100         . N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
    101         . I UNIT="" S UNIT="UNKNOWN"
    102         . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
    103         . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
    104         . S NFREQ=$$ANONS^C0XF2N ; anonomous subject
    105         . S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
    106         . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
    107         . D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
    108         . N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
    109         . I SCHED="" S SCHED="UNKNOWN"
    110         . N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
    111         . I SCHUNIT="" S SCHUNIT="UNKNOWN"
    112         . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
    113         . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
    114         . D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
    115         . D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
    116         . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
    117         . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
    118         . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
    119         . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
    120         . D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
    121         . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
    122         . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
    123         . D BULKLOAD^C0XF2N(.C0XFDA)
    124         . K C0XFDA
    125         S GRTN=C0SGRF
    126         q
    127         ;
    128 RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
    129         ;
    130 RXCUI(ZVUID)    ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
    131         ; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
    132         N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
    133         I $G(ZVUID)="" Q ""
    134         I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
    135         N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
    136         S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
    137         N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
    138         S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
    139         I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
    140         Q ZRSLT
    141         ;
    142 NISTMAP(ZRXN)   ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
    143         ; CONFORM TO NIST REQUIREMENTS
    144         ;INPATIENT CERTIFICATION
    145         I ZRXN=309362 S ZRXN=213169
    146         I ZRXN=855318 S ZRXN=855320
    147         I ZRXN=197361 S ZRXN=212549
    148         ;OUTPATIENT CERTIFICATION
    149         I ZRXN=310534 S ZRXN=205875
    150         I ZRXN=617312 S ZRXN=617314
    151         I ZRXN=310429 S ZRXN=200801
    152         I ZRXN=628953 S ZRXN=628958
    153         I ZRXN=745679 S ZRXN=630208
    154         I ZRXN=311564 S ZRXN=979334
    155         I ZRXN=836343 S ZRXN=836370
    156         Q ZRXN
    157         ;
     1C0SMED   ; GPL - Smart Meds Processing ;2/22/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22MED(GRTN,C0SARY) ; GRTN, passed by reference,
     23 ; is the return name of the graph created. "" if none
     24 ; C0SARY is passed in by reference and is the NHIN array of meds
     25 ;
     26 I $O(C0SARY("med",""))="" D  Q  ;
     27 . I $D(DEBUG) W !,"No Meds"
     28 S GRTN="" ; default to no meds
     29 N C0SGRF
     30 S C0SGRF="vistaSmart:"_ZPATID_"/"_ZTYP
     31 I $D(DEBUG) W !,"Processing ",C0SGRF
     32 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
     33 N MEDTRP ; MEDS TRIPLES
     34 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
     35 N FARY S FARY="C0XFARY"
     36 D USEFARY^C0XF2N(FARY)
     37 D VOCINIT^C0XUTIL
     38 ;
     39 N DUPCHK S DUPCHK="" ; check for no duplicates
     40 N ZI S ZI=""
     41 F  S ZI=$O(C0SARY("med",ZI)) Q:ZI=""  D  ;
     42 . N SDATE,SDTMP
     43 . I $G(C0SARY("med",ZI,"vaStatus@value"))="EXPIRED" D  Q  ;
     44 . . I $D(DEBUG) W !,"Expired Mediation, Skipping"
     45 . I $G(COSARY("med",ZI,"vaType@value"))="I" D  Q  ;
     46 . . I $D(DEBUG) W !,"Inpatient Med, skipping"
     47 . I $G(COSARY("med",ZI,"vaType@value"))="V" D  Q  ;
     48 . . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
     49 . ;
     50 . S SDTMP=$G(C0SARY("med",ZI,"ordered@value"))
     51 . I SDTMP="" D  ;
     52 . . S SDTMP=$G(C0SARY("med",ZI,"start@value"))
     53 . S SDATE=$$FMTE^XLFDT(SDTMP,"7D") ; ordered date
     54 . S SDATE=$TR(SDATE,"/","-") ; change slashes to hyphens
     55 . I SDATE="" S SDATE="UNKNOWN"
     56 . N DNAME,VUID,DCODE,RXNORM,SIG
     57 . S DNAME=$G(C0SARY("med",ZI,"name@value"))
     58 . I DNAME="" D  ;
     59 . . S DNAME=$G(C0SARY("med",ZI,"products.product@name"))
     60 . S VUID=$G(C0SARY("med",ZI,"products.product.vaProduct@vuid"))
     61 . S DCODE=$G(C0SARY("med",ZI,"products.product.vaProduct@code"))
     62 . I DCODE="" S DCODE=$G(C0SARY("med",ZI,"id@value"))
     63 . S RXNORM=$$RXCUI(VUID) ; look up RxNorm code
     64 . I $P(RXNORM,"^",2)="RXNORM" D  ;
     65 . . S RXVER=$P(RXNORM,"^",3)
     66 . . S RXNORM=$P(RXNORM,"^",1)
     67 . E  D  Q  ;
     68 . . I $D(DEBUG) W !,"NO RXNORM NUMBER AVAILABLE"
     69 . . I $D(DEBUG) W !,RXNORM
     70 . I DNAME="" D  Q  ;
     71 . . I $D(DEBUG) W !,"Error No Drug Name"
     72 . S MEDGRF=C0SGRF_"/"_DCODE_"-"_$G(SDTMP)
     73 . I +$D(DUPCHK(MEDGRF)) D  Q  ; NO DUPS ALLOWED
     74 . . I $D(DEBUG) W !,"Found Duplicate Medication ",MEDGRF
     75 . S DUPCHK(MEDGRF)=""
     76 . I $D(DEBUG) D  ;
     77 . . W !,"Processing Medication ",MEDGRF
     78 . . W !,DNAME
     79 . . W !,RXNORM
     80 . S SIG=$G(C0SARY("med",ZI,"sig"))
     81 . I SIG["|" D  ;
     82 . . N SIGTMP
     83 . . S SIGTMP=SIG
     84 . . S SIG=$P(SIGTMP,"|",2) ; remove the drug name from the sig
     85 . . I DNAME["FREE TXT" D  ; eRx free text drug, get drug name from sig
     86 . . . S DNAME=$P(SIGTMP,"|",1) ; eRx Drug name is stored as the first piece of the sig
     87 . K C0XFARY
     88 . D ADD^C0XF2N(C0SGRF,MEDGRF,"rdf:type","sp:Medication",FARY)
     89 . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:belongsTo",C0SGRF,FARY)
     90 . N DSUBJ S DSUBJ=$$ANONS^C0XF2N ; anonomous subject
     91 . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:drugName",DSUBJ,FARY)
     92 . I SIG'="" D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:instructions",SIG,FARY)
     93 . N NQTY,NQTY2,NFREQ,NFREQ2
     94 . S NQTY=$$ANONS^C0XF2N ; anonomous subject
     95 . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:quantity",NQTY,FARY)
     96 . S NQTY2=$$ANONS^C0XF2N ; anonomous subject
     97 . D ADD^C0XF2N(C0SGRF,NQTY,"sp:ValueAndUnit",NQTY2,FARY)
     98 . N DOSE S DOSE=$G(C0SARY("med",ZI,"doses.dose@dose"))
     99 . I DOSE="" S DOSE="UNKNOWN"
     100 . N UNIT S UNIT=$G(C0SARY("med",ZI,"doses.dose@units"))
     101 . I UNIT="" S UNIT="UNKNOWN"
     102 . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:value",DOSE,FARY)
     103 . D ADD^C0XF2N(C0SGRF,NQTY2,"sp:unit",UNIT,FARY)
     104 . S NFREQ=$$ANONS^C0XF2N ; anonomous subject
     105 . S NFREQ2=$$ANONS^C0XF2N ; anonomous subject
     106 . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:frequency",NFREQ,FARY)
     107 . D ADD^C0XF2N(C0SGRF,NFREQ,"sp:ValueAndUnit",NFREQ2,FARY)
     108 . N SCHED S SCHED=$G(C0SARY("med",ZI,"doses.dose@schedule"))
     109 . I SCHED="" S SCHED="UNKNOWN"
     110 . N SCHUNIT S SCHUNIT=$G(C0SARY("med",ZI,"doses.dose@route"))
     111 . I SCHUNIT="" S SCHUNIT="UNKNOWN"
     112 . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:value",SCHED,FARY)
     113 . D ADD^C0XF2N(C0SGRF,NFREQ2,"sp:unit",SCHUNIT,FARY)
     114 . D ADD^C0XF2N(C0SGRF,DSUBJ,"rdf:type","sp:CodedValue",FARY)
     115 . D ADD^C0XF2N(C0SGRF,DSUBJ,"sp:code","rxnorm:"_RXNORM,FARY)
     116 . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","sp:Code",FARY)
     117 . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:title",DNAME,FARY)
     118 . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"sp:system","rxnorm:",FARY)
     119 . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"dcterms:identifier",RXNORM,FARY)
     120 . D ADD^C0XF2N(C0SGRF,DSUBJ,"dcterms:title",DNAME,FARY)
     121 . D ADD^C0XF2N(C0SGRF,MEDGRF,"sp:startDate",SDATE,FARY)
     122 . D ADD^C0XF2N(C0SGRF,"rxnorm:"_RXNORM,"rdf:type","http://smartplatforms.org/terms/codes/RxNorm_Semantic",FARY)
     123 . D BULKLOAD^C0XF2N(.C0XFDA)
     124 . K C0XFDA
     125 S GRTN=C0SGRF
     126 q
     127 ;
     128RXNFN() Q 1130590011.001 ; RxNorm Concepts file number
     129 ;
     130RXCUI(ZVUID) ; EXTRINSIC WHICH RETURNS THE RXNORM CODE IF KNOWN OF
     131 ; THE VUID - RETURNS CODE^SYSTEM^VERSION TO USE IN THE CCR
     132 N ZRSLT S ZRSLT=ZVUID_"^"_"VUID"_"^" ; DEFAULT
     133 I $G(ZVUID)="" Q ""
     134 I '$D(^C0P("RXN")) Q ZRSLT ; ERX NOT INSTALLED
     135 N C0PIEN ; S C0PIEN=$$FIND1^DIC($$RXNFN,"","QX",ZVUID,"VUID")
     136 S C0PIEN=$O(^C0P("RXN","VUID",ZVUID,"")) ;GPL FIX FOR MULTIPLES
     137 N ZRXN S ZRXN=$$GET1^DIQ($$RXNFN,C0PIEN,.01)
     138 S ZRXN=$$NISTMAP(ZRXN) ; CHANGE THE CODE IF NEEDED
     139 I ZRXN'="" S ZRSLT=ZRXN_"^RXNORM^08AB_081201F"
     140 Q ZRSLT
     141 ;
     142NISTMAP(ZRXN) ; EXTRINSIC WHICH MAPS SOME RXNORM NUMBERS TO
     143 ; CONFORM TO NIST REQUIREMENTS
     144 ;INPATIENT CERTIFICATION
     145 I ZRXN=309362 S ZRXN=213169
     146 I ZRXN=855318 S ZRXN=855320
     147 I ZRXN=197361 S ZRXN=212549
     148 ;OUTPATIENT CERTIFICATION
     149 I ZRXN=310534 S ZRXN=205875
     150 I ZRXN=617312 S ZRXN=617314
     151 I ZRXN=310429 S ZRXN=200801
     152 I ZRXN=628953 S ZRXN=628958
     153 I ZRXN=745679 S ZRXN=630208
     154 I ZRXN=311564 S ZRXN=979334
     155 I ZRXN=836343 S ZRXN=836370
     156 Q ZRXN
     157 ;
  • smart/trunk/p/C0SMXMLB.m

    r1540 r1569  
    1 MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09  16:55 - Smart Container Ver.
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         QUIT
    4         ;
    5         ;DOC - The top level tag
    6         ;DOCTYPE - Want to include a DOCTYPE node
    7         ;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
    8 START(DOC,DOCTYPE,FLAG,NO1ST)   ;Call this once at the begining.
    9         K ^TMP("MXMLBLD",$J)
    10         S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
    11         I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
    12         I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
    13         D:$L($G(DOCTYPE)) OUTPUT("<!DOCTYPE "_DOCTYPE_">") D OUTPUT("<"_DOC_">")
    14         Q
    15         ;
    16 END     ;Call this once to close out the document
    17         D OUTPUT("</"_$G(^TMP("MXMLBLD",$J,"DOC"))_">")
    18         I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
    19         K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
    20         Q
    21         ;
    22 ITEM(INDENT,TAG,ATT,VALUE)      ;Output a Item
    23         N I,X
    24         S ATT=$G(ATT)
    25         I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
    26         D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"</"_TAG_">")
    27         Q
    28         ;DOITEM is a callback to output the lower level.
    29 MULTI(INDENT,TAG,ATT,DOITEM)    ;Output a Multipule
    30         N I,X,S
    31         S ATT=$G(ATT)
    32         D PUSH($G(INDENT),TAG,.ATT)
    33         D @DOITEM
    34         D POP
    35         Q
    36         ;
    37 ATT(ATT)        ;Output a string of attributes
    38         I $D(ATT)<9 Q ""
    39         N I,S,V
    40         S S="",I=""
    41         F  S I=$O(ATT(I)) Q:I=""  S S=S_" "_I_"="_$$Q(ATT(I))
    42         Q S
    43         ;
    44 Q(X)    ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
    45         ;I X'[$C(34) Q $C(34)_X_$C(34)
    46         I X'[$C(39) Q $C(39)_X_$C(39)
    47         ;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
    48         N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
    49         F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
    50         S Y=Y_$P(X,Q,$L(X,Q))
    51         ;Q $C(34)_Y_$C(34)
    52         Q $C(39)_Y_$C(39)
    53         ;
    54 XMLHDR()        ; -- provides current XML standard header
    55         Q "<?xml version=""1.0"" encoding=""utf-8"" ?>"
    56         ;
    57 OUTPUT(S)       ;Output
    58         N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
    59         I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
    60         W S,!
    61         Q
    62         ;
    63 CHARCHK(STR)    ; -- replace xml character limits with entities
    64         N A,I,X,Y,Z,NEWSTR
    65         S (Y,Z)=""
    66         ;IF STR["&" SET NEWSTR=STR DO  SET STR=Y_Z
    67         ;. FOR X=1:1  SET Y=Y_$PIECE(NEWSTR,"&",X)_"&amp;",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
    68         I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&amp;"_$P(STR,"&",I+1,999)
    69         I STR["<" F  S STR=$PIECE(STR,"<",1)_"&lt;"_$PIECE(STR,"<",2,99) Q:STR'["<"
    70         I STR[">" F  S STR=$PIECE(STR,">",1)_"&gt;"_$PIECE(STR,">",2,99) Q:STR'[">"
    71         I STR["'" F  S STR=$PIECE(STR,"'",1)_"&apos;"_$PIECE(STR,"'",2,99) Q:STR'["'"
    72         I STR["""" F  S STR=$PIECE(STR,"""",1)_"&quot;"_$PIECE(STR,"""",2,99) Q:STR'[""""
    73         ;
    74         S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
    75         QUIT STR
    76         ;
    77 COMMENT(VAL)    ;Add Comments
    78         N I,L
    79         ;I $D($G(VAL))=1 D OUTPUT("<!-- "_ATT_" -->") Q
    80         I $D(VAL) D OUTPUT("<!-- "_ATT_" -->") Q  ;CHANGED BY GPL FOR GTM
    81         S I="",L="<!--"
    82         F  S I=$O(ATT(I)) Q:I=""  D OUTPUT(L_ATT(I)) S L=""
    83         D OUTPUT("-->")
    84         Q
    85         ;
    86 PUSH(INDENT,TAG,ATT)    ;Write a TAG and save.
    87         N CNT
    88         S ATT=$G(ATT)
    89         D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
    90         S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
    91         Q
    92         ;
    93 POP     ;Write last pushed tag and pop
    94         N CNT,TAG,INDENT,X
    95         S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
    96         S INDENT=+X,TAG=$P(X,"^",2)
    97         D OUTPUT($$BLS(INDENT)_"</"_TAG_">")
    98         Q
    99         ;
    100 BLS(I)  ;Return INDENT string
    101         N S
    102         S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
    103         Q S
    104         ;
    105 INDENT()        ;Renturn indent level
    106         Q +$G(^TMP("MXMLBLD",$J,"STK"))
     1MXMLBLD ;;ISF/RWF - Tool to build XML ;07/09/09  16:55 - Smart Container Ver.
     2 ;;8.0;KERNEL;;;Build 2
     3 QUIT
     4 ;
     5 ;DOC - The top level tag
     6 ;DOCTYPE - Want to include a DOCTYPE node
     7 ;FLAG - Set to 'G' to store the output in the global ^TMP("MXMLBLD",$J,
     8START(DOC,DOCTYPE,FLAG,NO1ST) ;Call this once at the begining.
     9 K ^TMP("MXMLBLD",$J)
     10 S ^TMP("MXMLBLD",$J,"DOC")=DOC,^TMP("MXMLBLD",$J,"STK")=0
     11 I $G(FLAG)["G" S ^TMP("MXMLBLD",$J,"CNT")=1
     12 I $G(NO1ST)'=1 D OUTPUT($$XMLHDR)
     13 D:$L($G(DOCTYPE)) OUTPUT("<!DOCTYPE "_DOCTYPE_">") D OUTPUT("<"_DOC_">")
     14 Q
     15 ;
     16END ;Call this once to close out the document
     17 D OUTPUT("</"_$G(^TMP("MXMLBLD",$J,"DOC"))_">")
     18 I '$G(^TMP("MXMLBLD",$J,"CNT")) K ^TMP("MXMLBLD",$J)
     19 K ^TMP("MXMLBLD",$J,"DOC"),^("CNT"),^("STK")
     20 Q
     21 ;
     22ITEM(INDENT,TAG,ATT,VALUE) ;Output a Item
     23 N I,X
     24 S ATT=$G(ATT)
     25 I '$D(VALUE) D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_" />") Q
     26 D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">"_$$CHARCHK(VALUE)_"</"_TAG_">")
     27 Q
     28 ;DOITEM is a callback to output the lower level.
     29MULTI(INDENT,TAG,ATT,DOITEM) ;Output a Multipule
     30 N I,X,S
     31 S ATT=$G(ATT)
     32 D PUSH($G(INDENT),TAG,.ATT)
     33 D @DOITEM
     34 D POP
     35 Q
     36 ;
     37ATT(ATT) ;Output a string of attributes
     38 I $D(ATT)<9 Q ""
     39 N I,S,V
     40 S S="",I=""
     41 F  S I=$O(ATT(I)) Q:I=""  S S=S_" "_I_"="_$$Q(ATT(I))
     42 Q S
     43 ;
     44Q(X) ;Add Quotes - Changed by gpl to use single instead of double quotes 6/11
     45 ;I X'[$C(34) Q $C(34)_X_$C(34)
     46 I X'[$C(39) Q $C(39)_X_$C(39)
     47 ;N Q,Y,I,Z S Q=$C(34),(Y,Z)=""
     48 N Q,Y,I,Z S Q=$C(39),(Y,Z)=""
     49 F I=1:1:$L(X,Q)-1 S Y=Y_$P(X,Q,I)_Q_Q
     50 S Y=Y_$P(X,Q,$L(X,Q))
     51 ;Q $C(34)_Y_$C(34)
     52 Q $C(39)_Y_$C(39)
     53 ;
     54XMLHDR() ; -- provides current XML standard header
     55 Q "<?xml version=""1.0"" encoding=""utf-8"" ?>"
     56 ;
     57OUTPUT(S) ;Output
     58 N C S C=$G(^TMP("MXMLBLD",$J,"CNT"))
     59 I C S ^TMP("MXMLBLD",$J,C)=S,^TMP("MXMLBLD",$J,"CNT")=C+1 Q
     60 W S,!
     61 Q
     62 ;
     63CHARCHK(STR) ; -- replace xml character limits with entities
     64 N A,I,X,Y,Z,NEWSTR
     65 S (Y,Z)=""
     66 ;IF STR["&" SET NEWSTR=STR DO  SET STR=Y_Z
     67 ;. FOR X=1:1  SET Y=Y_$PIECE(NEWSTR,"&",X)_"&amp;",Z=$PIECE(STR,"&",X+1,999) QUIT:Z'["&"
     68 I STR["&" F I=1:1:$L(STR,"&")-1 S STR=$P(STR,"&",1,I)_"&amp;"_$P(STR,"&",I+1,999)
     69 I STR["<" F  S STR=$PIECE(STR,"<",1)_"&lt;"_$PIECE(STR,"<",2,99) Q:STR'["<"
     70 I STR[">" F  S STR=$PIECE(STR,">",1)_"&gt;"_$PIECE(STR,">",2,99) Q:STR'[">"
     71 I STR["'" F  S STR=$PIECE(STR,"'",1)_"&apos;"_$PIECE(STR,"'",2,99) Q:STR'["'"
     72 I STR["""" F  S STR=$PIECE(STR,"""",1)_"&quot;"_$PIECE(STR,"""",2,99) Q:STR'[""""
     73 ;
     74 S STR=$TR(STR,$C(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31))
     75 QUIT STR
     76 ;
     77COMMENT(VAL) ;Add Comments
     78 N I,L
     79 ;I $D($G(VAL))=1 D OUTPUT("<!-- "_ATT_" -->") Q
     80 I $D(VAL) D OUTPUT("<!-- "_ATT_" -->") Q  ;CHANGED BY GPL FOR GTM
     81 S I="",L="<!--"
     82 F  S I=$O(ATT(I)) Q:I=""  D OUTPUT(L_ATT(I)) S L=""
     83 D OUTPUT("-->")
     84 Q
     85 ;
     86PUSH(INDENT,TAG,ATT) ;Write a TAG and save.
     87 N CNT
     88 S ATT=$G(ATT)
     89 D OUTPUT($$BLS($G(INDENT))_"<"_TAG_$$ATT(.ATT)_">")
     90 S CNT=$G(^TMP("MXMLBLD",$J,"STK"))+1,^TMP("MXMLBLD",$J,"STK")=CNT,^TMP("MXMLBLD",$J,"STK",CNT)=INDENT_"^"_TAG
     91 Q
     92 ;
     93POP ;Write last pushed tag and pop
     94 N CNT,TAG,INDENT,X
     95 S CNT=$G(^TMP("MXMLBLD",$J,"STK")),X=^TMP("MXMLBLD",$J,"STK",CNT),^TMP("MXMLBLD",$J,"STK")=CNT-1
     96 S INDENT=+X,TAG=$P(X,"^",2)
     97 D OUTPUT($$BLS(INDENT)_"</"_TAG_">")
     98 Q
     99 ;
     100BLS(I) ;Return INDENT string
     101 N S
     102 S S="",I=$G(I) S:I>0 $P(S," ",I)=" "
     103 Q S
     104 ;
     105INDENT() ;Renturn indent level
     106 Q +$G(^TMP("MXMLBLD",$J,"STK"))
  • smart/trunk/p/C0SNHIN.m

    r1540 r1569  
    1 C0SNHIN   ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2011-2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21 EN(ZRTN,ZDFN,ZPART,KEEP)        ; GENERATE AN NHIN ARRAY FOR A PATIENT
    22         ;
    23         K GARY,GNARY,GIDX,C0SDOCID
    24         K ZRTN
    25         N GN
    26         K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
    27         K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
    28         K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
    29         D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
    30         S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
    31         S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
    32         D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
    33         I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
    34         ;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
    35         Q
    36         ;
    37 PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
    38         ;
    39         N ZG
    40         S ZG=$NA(^TMP("PQRIXML",$J))
    41         K @ZG
    42         D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
    43         N C0SDOCID
    44         S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
    45         D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
    46         I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
    47         Q
    48         ;
    49 PQRI2(ZRTN)     ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
    50         ;
    51         ;N GG
    52         D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
    53         D PROCESS(ZRTN,"GG","root",1)
    54         Q
    55         ;
    56 PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP)        ; PARSE AND RUN DOMO ON XML
    57         ; ZRTN IS PASSED BY REFERENCE
    58         ; ZXML IS PASSED BY NAME
    59         ; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
    60         ;
    61         N GN
    62         S GN=$NA(^TMP("C0SPROCESS",$J))
    63         K @GN
    64         M @GN=@ZXML
    65         S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
    66         K @GN
    67         D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
    68         I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
    69         Q
    70         ;
    71 LOADSMRT        ;
    72         ;
    73         K ^GPL("SMART")
    74         S GN=$NA(^GPL("SMART",1))
    75         I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
    76         Q
    77         ;
    78 SMART   ; TRY IT WITH SMART
    79         ;
    80         S GN=$NA(^GPL("SMART"))
    81         ;K ^TMP("MXMLDOM",$J)
    82         K ^TMP("MXMLERR",$J)
    83         S C0SDOCID=$$PARSE(GN,"SMART")
    84         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
    85         ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
    86         Q
    87         ;
    88 CCR     ; TRY IT WITH A CCR
    89         ;
    90         S GN=$NA(^GPL("CCR"))
    91         ;K ^TMP("MXMLDOM",$J)
    92         K ^TMP("MXMLERR",$J)
    93         S C0SDOCID=$$PARSE(GN,"CCR")
    94         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
    95         ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
    96         Q
    97         ;
    98 MED     ; TRY IT WITH A CCR MED SECTION
    99         ;
    100         S GN=$NA(^GPL("MED"))
    101         K ^TMP("MXMLDOM",$J)
    102         K ^TMP("MXMLERR",$J)
    103         S C0SDOCID=$$PARSE(GN,"MED")
    104         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
    105         ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
    106         Q
    107         ;
    108 CCD     ; TRY IT WITH A CCD
    109         ;
    110         S GN=$NA(^GPL("CCD"))
    111         ;K ^TMP("MXMLDOM",$J)
    112         K ^TMP("MXMLERR",$J)
    113         S C0SDOCID=$$PARSE(GN,"CCD")
    114         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
    115         ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
    116         Q
    117         ;
    118 TEST1   ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
    119         ; PARSED WITH MXML
    120         ; RUN THROUGH XPATH
    121         K GARY,GIDX,C0SDOCID
    122         S GN=$NA(^GPL("NHIN"))
    123         ;S GN=$NA(^GPL("DOMI"))
    124         S C0SDOCID=$$PARSE(GN,"GPLTEST")
    125         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
    126         K ^GPL("GNARY")
    127         M ^GPL("GNARY")=GNARY
    128         Q
    129         ;
    130 TEST2   ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
    131         ;
    132         S GN=$NA(^GPL("GNARY"))
    133         S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
    134         D OUTXML^C0SDOM("G",C0SDOCID)
    135         K ^GPL("DOMI")
    136         M ^GPL("DOMI")=G
    137         Q
    138         ;
    139 TEST3   ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
    140         ; PARSED WITH MXML
    141         ; RUN THROUGH XPATH
    142         K GARY,GIDX,C0SDOCID
    143         ;S GN=$NA(^GPL("NHIN"))
    144         S GN=$NA(^GPL("DOMI"))
    145         S C0SDOCID=$$PARSE(GN,"GPLTEST")
    146         D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
    147         Q
    148         ;
    149 DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
    150         ; THE XPATH INDEX ZXIDX, PASSED BY NAME
    151         ; THE XPATH ARRAY XPARY, PASSED BY NAME
    152         ; ZOID IS THE STARTING OID
    153         ; ZPATH IS THE STARTING XPATH, USUALLY "/"
    154         ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
    155         ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
    156         I $G(ZREDUX)="" S ZREDUX=""
    157         N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
    158         N NEWNUM S NEWNUM=""
    159         I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
    160         S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
    161         I $G(ZREDUX)'="" D  ; REDUX PROVIDED?
    162         . N GT S GT=$P(NEWPATH,ZREDUX,2)
    163         . I GT'="" S NEWPATH=GT
    164         S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
    165         N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
    166         I $D(GA) D  ; PROCESS THE ATTRIBUTES
    167         . N ZI S ZI=""
    168         . F  S ZI=$O(GA(ZI)) Q:ZI=""  D  ; FOR EACH ATTRIBUTE
    169         . . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
    170         . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
    171         . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
    172         N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
    173         I $D(GD(2)) D  ;
    174         . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
    175         E  I $D(GD(1)) D  ;
    176         . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
    177         . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
    178         N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
    179         I ZFRST'=0 D  ; THERE IS A CHILD
    180         . N ZNUM
    181         . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
    182         . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
    183         N GNXT S GNXT=$$NXTSIB(ZOID)
    184         I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
    185         I GNXT'=0 D  ;
    186         . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
    187         . I (ZNUM="")&(ZMULT) D  ; SIBLING IS FIRST OF MULTIPLES
    188         . . N ZNUM S ZNUM=1 ;
    189         . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
    190         . E  D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
    191         Q
    192         ;
    193 ADDNARY(ZXP,ZVALUE)     ; ADD AN NHIN ARRAY VALUE TO ZNARY
    194         ;
    195         N ZZI,ZZJ,ZZN
    196         S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
    197         I ZZI="" Q  ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
    198         S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
    199         S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
    200         I ZZI'["]" D  ; A SINGLETON
    201         . S ZZN=1
    202         E  D  ; THERE IS AN [x] OCCURANCE
    203         . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
    204         . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
    205         I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
    206         Q
    207         ;
    208 PARSE(INXML,INDOC)      ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
    209         ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
    210         ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
    211         ;Q $$EN^MXMLDOM(INXML)
    212         Q $$EN^MXMLDOM(INXML,"W")
    213         ;
    214 ISMULT(ZOID)    ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
    215         N ZN
    216         ;I $$TAG(ZOID)["entry" B
    217         S ZN=$$NXTSIB(ZOID)
    218         I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
    219         Q 0
    220         ;
    221 FIRST(ZOID)     ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
    222         Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
    223         ;
    224 PARENT(ZOID)    ;RETURNS THE OID OF THE PARENT OF ZOID
    225         Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
    226         ;
    227 ATT(RTN,NODE)   ;GET ATTRIBUTES FOR ZOID
    228         S HANDLE=C0SDOCID
    229         K @RTN
    230         D GETTXT^MXMLDOM("A")
    231         Q
    232         ;
    233 TAG(ZOID)       ; RETURNS THE XML TAG FOR THE NODE
    234         ;I ZOID=149 B ;GPLTEST
    235         N X,Y
    236         S Y=""
    237         S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
    238         I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
    239         I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
    240         Q Y
    241         ;
    242 NXTSIB(ZOID)    ; RETURNS THE NEXT SIBLING
    243         Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
    244         ;
    245 DATA(ZT,ZOID)   ; RETURNS DATA FOR THE NODE
    246         ;N ZT,ZN S ZT=""
    247         ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
    248         ;Q $G(@C0SDOM@(ZOID,"T",1))
    249         S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
    250         Q
    251         ;
    252 OUTXML(ZRTN,INID)       ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
    253         ;
    254         S C0SDOCID=INID
    255         D START^C0SMXMLB($$TAG(1),,"G")
    256         D NDOUT($$FIRST(1))
    257         D END^C0SMXMLB ;END THE DOCUMENT
    258         M @ZRTN=^TMP("MXMLBLD",$J)
    259         K ^TMP("MXMLBLD",$J)
    260         Q
    261         ;
    262 NDOUT(ZOID)     ;CALLBACK ROUTINE - IT IS RECURSIVE
    263         N ZI S ZI=$$FIRST(ZOID)
    264         I ZI'=0 D  ; THERE IS A CHILD
    265         . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
    266         . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
    267         E  D  ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
    268         . ;W "DOING",ZOID,!
    269         . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
    270         . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
    271         . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
    272         I $$NXTSIB(ZOID)'=0 D  ; THERE IS A SIBLING
    273         . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
    274         Q
    275         ;
    276 WNHIN(ZDFN)     ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
    277         ;
    278         N GN,GN2
    279         D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
    280         S GN2=$NA(@GN@(1))
    281         W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
    282         Q
    283         ;
    284 TESTNARY        ; TEST MAKING A NHIN ARRAY
    285         N ZI S ZI=""
    286         N ZH ; DOM HANDLE
    287         D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
    288         S ZH=C0SDOCID ; SET THE HANDLE
    289         N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
    290         F  S ZI=$O(@ZD@(ZI)) Q:ZI=""  D  ; FOR EACH NODE
    291         . N ZATT
    292         . D MNARY(.ZATT,ZH,ZI)
    293         . N ZPRE,ZN
    294         . S ZPRE=$$PRE(ZI)
    295         . S ZN=$P(ZPRE,",",2)
    296         . S ZPRE=$P(ZPRE,",",1)
    297         . ;I $D(ZATT) ZWR ZATT
    298         . N ZJ S ZJ=""
    299         . F  S ZJ=$O(ZATT(ZJ)) Q:ZJ=""  D  ; FOR EACH ATTRIBUTE
    300         . . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
    301         . . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
    302         Q
    303         ;
    304 PRE(ZNODE)      ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
    305         ;
    306         N GI,GI2,GPT,GJ,GN
    307         S GI=$$PARENT(ZNODE) ; PARENT NODE
    308         I GI=0 Q ""  ; NO PARENT
    309         S GPT=$$TAG(GI) ; TAG OF PARENT
    310         S GI2=$$PARENT(GI) ; PARENT OF PARENT
    311         I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
    312         S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
    313         I GJ=ZNODE Q:$$TAG(GI)_",1"
    314         F GN=2:1 Q:GJ=ZNODE  D  ;
    315         . S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
    316         Q GPT_","_GN
    317         ;
    318 MNARY(ZRTN,ZHANDLE,ZOID)        ; MAKE A NHIN ARRAY FROM A DOM NODE
    319         ; RETURNED IN ZRTN, PASSED BY REFERENCE
    320         ; ZHANDLE IS THE DOM DOCUMENT ID
    321         ; ZOID IS THE DOM NODE
    322         D ATT("ZRTN",ZOID)
    323         Q
    324         ;
     1C0SNHIN   ; GPL - Smart Container - OUTPUT OF NHINV ROUTINES;6/3/11  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2011-2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21EN(ZRTN,ZDFN,ZPART,KEEP) ; GENERATE AN NHIN ARRAY FOR A PATIENT
     22 ;
     23 K GARY,GNARY,GIDX,C0SDOCID
     24 K ZRTN
     25 N GN
     26 K ^TMP("NHINV",$J) ; CLEAN UP FROM LAST CALL
     27 K ^TMP("MXMLDOM",$J) ; CLEAN UP DOM
     28 K ^TMP("MXMLERR",$J) ; CLEAN UP MXML ERRORS
     29 D GET^C0SNHINV(.GN,ZDFN,ZPART) ; CALL NHINV ROUTINES TO PULL XML
     30 S GN=$P(GN,")",1)_")" ; CUT OFF THE REST OF LINE PROTOCOL
     31 S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
     32 D DOMO^C0SDOM(C0SDOCID,"/","ZRTN","GIDX","GARY",,"/results/") ; BLD ARRAYS
     33 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
     34 ;D PROCESS("ZRTN",GN,"/result/",$G(KEEP))
     35 Q
     36 ;
     37PQRI(ZOUT,KEEP) ; RETURN THE NHIN ARRAY FOR THE PQRI XML TEMPLATE
     38 ;
     39 N ZG
     40 S ZG=$NA(^TMP("PQRIXML",$J))
     41 K @ZG
     42 D GETXML^C0SMXP(ZG,"PQRIXML") ; GET THE XML FROM C0S MISC XML
     43 N C0SDOCID
     44 S C0SDOCID=$$PARSE^C0SDOM(ZG,"PQRIXML") ; PARSE THE XML
     45 D DOMO^C0SDOM(C0SDOCID,"/","ZOUT","GIDX","GARY",,"//submission") ; BLD ARRAYS
     46 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
     47 Q
     48 ;
     49PQRI2(ZRTN) ; RETURN THE NHIN ARRAY FOR PQRI ONE MEASURE
     50 ;
     51 ;N GG
     52 D GETXML^C0SMXP("GG","PQRI ONE MEASURE")
     53 D PROCESS(ZRTN,"GG","root",1)
     54 Q
     55 ;
     56PROCESS(ZRSLT,ZXML,ZREDUCE,KEEP) ; PARSE AND RUN DOMO ON XML
     57 ; ZRTN IS PASSED BY REFERENCE
     58 ; ZXML IS PASSED BY NAME
     59 ; IF KEEP IS 1, GARY AND GIDX ARE NOT KILLED
     60 ;
     61 N GN
     62 S GN=$NA(^TMP("C0SPROCESS",$J))
     63 K @GN
     64 M @GN=@ZXML
     65 S C0SDOCID=$$PARSE(GN,"NHINARRAY") ; PARSE WITH MXML
     66 K @GN
     67 D DOMO^C0SDOM(C0SDOCID,"/","ZRSLT","GIDX","GARY",,$G(ZREDUCE)) ; BLD ARRAYS
     68 I '$G(KEEP) K GIDX,GARY ; GET RID OF THE ARRAYS UNLESS KEEP=1
     69 Q
     70 ;
     71LOADSMRT ;
     72 ;
     73 K ^GPL("SMART")
     74 S GN=$NA(^GPL("SMART",1))
     75 I $$FTG^%ZISH("/home/george/","alex-lewis2.xml",GN,2) W !,"SMART FILE LOADED"
     76 Q
     77 ;
     78SMART ; TRY IT WITH SMART
     79 ;
     80 S GN=$NA(^GPL("SMART"))
     81 ;K ^TMP("MXMLDOM",$J)
     82 K ^TMP("MXMLERR",$J)
     83 S C0SDOCID=$$PARSE(GN,"SMART")
     84 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//rdf:RDF/")
     85 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
     86 Q
     87 ;
     88CCR ; TRY IT WITH A CCR
     89 ;
     90 S GN=$NA(^GPL("CCR"))
     91 ;K ^TMP("MXMLDOM",$J)
     92 K ^TMP("MXMLERR",$J)
     93 S C0SDOCID=$$PARSE(GN,"CCR")
     94 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ContinuityOfCareRecord/Body/")
     95 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
     96 Q
     97 ;
     98MED ; TRY IT WITH A CCR MED SECTION
     99 ;
     100 S GN=$NA(^GPL("MED"))
     101 K ^TMP("MXMLDOM",$J)
     102 K ^TMP("MXMLERR",$J)
     103 S C0SDOCID=$$PARSE(GN,"MED")
     104 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//Medications/")
     105 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
     106 Q
     107 ;
     108CCD ; TRY IT WITH A CCD
     109 ;
     110 S GN=$NA(^GPL("CCD"))
     111 ;K ^TMP("MXMLDOM",$J)
     112 K ^TMP("MXMLERR",$J)
     113 S C0SDOCID=$$PARSE(GN,"CCD")
     114 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"//ClinicalDocument/component/structuredBody/")
     115 ;K ^TMP("MXMLDOM",$J) ;CLEAN UP... IT'S BIG
     116 Q
     117 ;
     118TEST1 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
     119 ; PARSED WITH MXML
     120 ; RUN THROUGH XPATH
     121 K GARY,GIDX,C0SDOCID
     122 S GN=$NA(^GPL("NHIN"))
     123 ;S GN=$NA(^GPL("DOMI"))
     124 S C0SDOCID=$$PARSE(GN,"GPLTEST")
     125 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
     126 K ^GPL("GNARY")
     127 M ^GPL("GNARY")=GNARY
     128 Q
     129 ;
     130TEST2 ; PUT GNARY THROUGH DOMI AND STORE XML IN ^GPL("DOMI")
     131 ;
     132 S GN=$NA(^GPL("GNARY"))
     133 S C0SDOCID=$$DOMI^C0SDOM(GN,,"results")
     134 D OUTXML^C0SDOM("G",C0SDOCID)
     135 K ^GPL("DOMI")
     136 M ^GPL("DOMI")=G
     137 Q
     138 ;
     139TEST3 ; TEST NHINV OUTPUT IN ^GPL("NIHIN")
     140 ; PARSED WITH MXML
     141 ; RUN THROUGH XPATH
     142 K GARY,GIDX,C0SDOCID
     143 ;S GN=$NA(^GPL("NHIN"))
     144 S GN=$NA(^GPL("DOMI"))
     145 S C0SDOCID=$$PARSE(GN,"GPLTEST")
     146 D DOMO^C0SDOM(C0SDOCID,"/","GNARY","GIDX","GARY",,"/results/")
     147 Q
     148 ;
     149DOMO(ZOID,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; RECURSIVE ROUTINE TO POPULATE
     150 ; THE XPATH INDEX ZXIDX, PASSED BY NAME
     151 ; THE XPATH ARRAY XPARY, PASSED BY NAME
     152 ; ZOID IS THE STARTING OID
     153 ; ZPATH IS THE STARTING XPATH, USUALLY "/"
     154 ; ZNUM IS THE MULTIPLE NUMBER [x], USUALLY NULL WHEN ON THE TOP NODE
     155 ; ZREDUX IS THE XPATH REDUCTION STRING, TAKEN OUT OF EACH XPATH IF PRESENT
     156 I $G(ZREDUX)="" S ZREDUX=""
     157 N NEWPATH,NARY ; NEWPATH IS AN XPATH NARY IS AN NHIN MUMPS ARRAY
     158 N NEWNUM S NEWNUM=""
     159 I $G(ZNUM)>0 S NEWNUM="["_ZNUM_"]"
     160 S NEWPATH=ZPATH_"/"_$$TAG(ZOID)_NEWNUM ; CREATE THE XPATH FOR THIS NODE
     161 I $G(ZREDUX)'="" D  ; REDUX PROVIDED?
     162 . N GT S GT=$P(NEWPATH,ZREDUX,2)
     163 . I GT'="" S NEWPATH=GT
     164 S @ZXIDX@(NEWPATH)=ZOID ; ADD THE XPATH FOR THIS NODE TO THE XPATH INDEX
     165 N GA D ATT("GA",ZOID) ; GET ATTRIBUTES FOR THIS NODE
     166 I $D(GA) D  ; PROCESS THE ATTRIBUTES
     167 . N ZI S ZI=""
     168 . F  S ZI=$O(GA(ZI)) Q:ZI=""  D  ; FOR EACH ATTRIBUTE
     169 . . N ZP S ZP=NEWPATH_"/"_ZI ; PATH FOR ATTRIBUTE
     170 . . S @ZXPARY@(ZP)=GA(ZI) ; ADD THE ATTRIBUTE XPATH TO THE XP ARRAY
     171 . . I GA(ZI)'="" D ADDNARY(ZP,GA(ZI)) ; ADD THE NHIN ARRAY VALUE
     172 N GD D DATA("GD",ZOID) ; SEE IF THERE IS DATA FOR THIS NODE
     173 I $D(GD(2)) D  ;
     174 . M @ZXPARY@(NEWPATH)=GD ; IF MULITPLE DATA MERGE TO THE ARRAY
     175 E  I $D(GD(1)) D  ;
     176 . S @ZXPARY@(NEWPATH)=GD(1) ; IF SINGLE VALUE, ADD TO ARRAY
     177 . I GD(1)'="" D ADDNARY(NEWPATH,GD(1)) ; ADD TO NHIN ARRAY
     178 N ZFRST S ZFRST=$$FIRST(ZOID) ; SET FIRST CHILD
     179 I ZFRST'=0 D  ; THERE IS A CHILD
     180 . N ZNUM
     181 . N ZMULT S ZMULT=$$ISMULT(ZFRST) ; IS FIRST CHILD A MULTIPLE
     182 . D DOMO(ZFRST,NEWPATH,ZNARY,ZXIDX,ZXPARY,$S(ZMULT:1,1:""),ZREDUX) ; THE CHILD
     183 N GNXT S GNXT=$$NXTSIB(ZOID)
     184 I $$TAG(GNXT)'=$$TAG(ZOID) S ZNUM="" ; RESET COUNTING AFTER MULTIPLES
     185 I GNXT'=0 D  ;
     186 . N ZMULT S ZMULT=$$ISMULT(GNXT) ; IS THE SIBLING A MULTIPLE?
     187 . I (ZNUM="")&(ZMULT) D  ; SIBLING IS FIRST OF MULTIPLES
     188 . . N ZNUM S ZNUM=1 ;
     189 . . D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,ZNUM,ZREDUX) ; DO NEXT SIB
     190 . E  D DOMO(GNXT,ZPATH,ZNARY,ZXIDX,ZXPARY,$S(ZNUM>0:ZNUM+1,1:""),ZREDUX) ; SIB
     191 Q
     192 ;
     193ADDNARY(ZXP,ZVALUE) ; ADD AN NHIN ARRAY VALUE TO ZNARY
     194 ;
     195 N ZZI,ZZJ,ZZN
     196 S ZZI=$P(ZXP,"/",1) ; FIRST PIECE OF XPATH ARRAY
     197 I ZZI="" Q  ; DON'T ADD THIS ONE .. PROBABLY THE //results NODE
     198 S ZZJ=$P(ZXP,ZZI_"/",2) ; REST OF XPATH ARRAY
     199 S ZZJ=$TR(ZZJ,"/",".") ; REPLACE / WITH .
     200 I ZZI'["]" D  ; A SINGLETON
     201 . S ZZN=1
     202 E  D  ; THERE IS AN [x] OCCURANCE
     203 . S ZZN=$P($P(ZZI,"[",2),"]",1) ; PULL OUT THE OCCURANCE
     204 . S ZZI=$P(ZZI,"[",1) ; TAKE OUT THE [X]
     205 I ZZJ'="" S @ZNARY@(ZZI,ZZN,ZZJ)=ZVALUE
     206 Q
     207 ;
     208PARSE(INXML,INDOC) ;CALL THE MXML PARSER ON INXML, PASSED BY NAME
     209 ; INDOC IS PASSED AS THE DOCUMENT NAME - DON'T KNOW WHERE TO STORE THIS NOW
     210 ; EXTRINSIC WHICH RETURNS THE DOCID ASSIGNED BY MXML
     211 ;Q $$EN^MXMLDOM(INXML)
     212 Q $$EN^MXMLDOM(INXML,"W")
     213 ;
     214ISMULT(ZOID) ; RETURN TRUE IF ZOID IS ONE OF A MULTIPLE
     215 N ZN
     216 ;I $$TAG(ZOID)["entry" B
     217 S ZN=$$NXTSIB(ZOID)
     218 I ZN'="" Q $$TAG(ZOID)=$$TAG(ZN) ; IF TAG IS THE SAME AS NEXT SIB TAG
     219 Q 0
     220 ;
     221FIRST(ZOID) ;RETURNS THE OID OF THE FIRST CHILD OF ZOID
     222 Q $$CHILD^MXMLDOM(C0SDOCID,ZOID)
     223 ;
     224PARENT(ZOID) ;RETURNS THE OID OF THE PARENT OF ZOID
     225 Q $$PARENT^MXMLDOM(C0SDOCID,ZOID)
     226 ;
     227ATT(RTN,NODE) ;GET ATTRIBUTES FOR ZOID
     228 S HANDLE=C0SDOCID
     229 K @RTN
     230 D GETTXT^MXMLDOM("A")
     231 Q
     232 ;
     233TAG(ZOID) ; RETURNS THE XML TAG FOR THE NODE
     234 ;I ZOID=149 B ;GPLTEST
     235 N X,Y
     236 S Y=""
     237 S X=$G(C0SCBK("TAG")) ;IS THERE A CALLBACK FOR THIS ROUTINE
     238 I X'="" X X ; EXECUTE THE CALLBACK, SHOULD SET Y
     239 I Y="" S Y=$$NAME^MXMLDOM(C0SDOCID,ZOID)
     240 Q Y
     241 ;
     242NXTSIB(ZOID) ; RETURNS THE NEXT SIBLING
     243 Q $$SIBLING^MXMLDOM(C0SDOCID,ZOID)
     244 ;
     245DATA(ZT,ZOID) ; RETURNS DATA FOR THE NODE
     246 ;N ZT,ZN S ZT=""
     247 ;S C0SDOM=$NA(^TMP("MXMLDOM",$J,C0SDOCID))
     248 ;Q $G(@C0SDOM@(ZOID,"T",1))
     249 S ZN=$$TEXT^MXMLDOM(C0SDOCID,ZOID,ZT)
     250 Q
     251 ;
     252OUTXML(ZRTN,INID) ; USES C0SMXMLB (MXMLBLD) TO OUTPUT XML FROM AN MXMLDOM
     253 ;
     254 S C0SDOCID=INID
     255 D START^C0SMXMLB($$TAG(1),,"G")
     256 D NDOUT($$FIRST(1))
     257 D END^C0SMXMLB ;END THE DOCUMENT
     258 M @ZRTN=^TMP("MXMLBLD",$J)
     259 K ^TMP("MXMLBLD",$J)
     260 Q
     261 ;
     262NDOUT(ZOID) ;CALLBACK ROUTINE - IT IS RECURSIVE
     263 N ZI S ZI=$$FIRST(ZOID)
     264 I ZI'=0 D  ; THERE IS A CHILD
     265 . N ZATT D ATT("ZATT",ZOID) ; THESE ARE THE ATTRIBUTES MOVED TO ZATT
     266 . D MULTI^C0SMXMLB("",$$TAG(ZOID),.ZATT,"NDOUT^C0SMXML(ZI)") ;HAVE CHILDREN
     267 E  D  ; NO CHILD - IF NO CHILDREN, A NODE HAS DATA, IS AN ENDPOINT
     268 . ;W "DOING",ZOID,!
     269 . N ZD D DATA("ZD",ZOID) ;NODES WITHOUT CHILDREN HAVE DATA
     270 . N ZATT D ATT("ZATT",ZOID) ;ATTRIBUTES
     271 . D ITEM^C0SMXMLB("",$$TAG(ZOID),.ZATT,$G(ZD(1))) ;NO CHILDREN
     272 I $$NXTSIB(ZOID)'=0 D  ; THERE IS A SIBLING
     273 . D NDOUT($$NXTSIB(ZOID)) ;RECURSE FOR SIBLINGS
     274 Q
     275 ;
     276WNHIN(ZDFN) ; WRITES THE XML OUTPUT OF GET^NHINV TO AN XML FILE
     277 ;
     278 N GN,GN2
     279 D GET^NHINV(.GN,ZDFN) ; EXTRACT THE XML
     280 S GN2=$NA(@GN@(1))
     281 W $$OUTPUT^C0SXPATH(GN2,"nhin_"_ZDFN_".xml","/home/wvehr3-09/")
     282 Q
     283 ;
     284TESTNARY ; TEST MAKING A NHIN ARRAY
     285 N ZI S ZI=""
     286 N ZH ; DOM HANDLE
     287 D TEST1 ; PARSE AN NHIN RESULT INTO THE DOM
     288 S ZH=C0SDOCID ; SET THE HANDLE
     289 N ZD S ZD=$NA(^TMP("MXMLDOM",$J,ZH))
     290 F  S ZI=$O(@ZD@(ZI)) Q:ZI=""  D  ; FOR EACH NODE
     291 . N ZATT
     292 . D MNARY(.ZATT,ZH,ZI)
     293 . N ZPRE,ZN
     294 . S ZPRE=$$PRE(ZI)
     295 . S ZN=$P(ZPRE,",",2)
     296 . S ZPRE=$P(ZPRE,",",1)
     297 . ;I $D(ZATT) ZWR ZATT
     298 . N ZJ S ZJ=""
     299 . F  S ZJ=$O(ZATT(ZJ)) Q:ZJ=""  D  ; FOR EACH ATTRIBUTE
     300 . . W ZPRE_"["_ZN_"]"_$$TAG(ZI)_"."_ZJ_"="_ZATT(ZJ),!
     301 . . S GOUT(ZPRE,ZN,$$TAG(ZI)_"."_ZJ)=ZATT(ZJ)
     302 Q
     303 ;
     304PRE(ZNODE) ; EXTRINSIC WHICH RETURNS THE PREFIX FOR A NODE
     305 ;
     306 N GI,GI2,GPT,GJ,GN
     307 S GI=$$PARENT(ZNODE) ; PARENT NODE
     308 I GI=0 Q ""  ; NO PARENT
     309 S GPT=$$TAG(GI) ; TAG OF PARENT
     310 S GI2=$$PARENT(GI) ; PARENT OF PARENT
     311 I (GI2'=0)&($$TAG(GI2)'="results") S GPT=$$TAG(GI2)_"."_GPT
     312 S GJ=$$FIRST(GI) ; NODE OF FIRST SIB
     313 I GJ=ZNODE Q:$$TAG(GI)_",1"
     314 F GN=2:1 Q:GJ=ZNODE  D  ;
     315 . S GJ=$$NXTSIB(GJ) ; NEXT SIBLING
     316 Q GPT_","_GN
     317 ;
     318MNARY(ZRTN,ZHANDLE,ZOID) ; MAKE A NHIN ARRAY FROM A DOM NODE
     319 ; RETURNED IN ZRTN, PASSED BY REFERENCE
     320 ; ZHANDLE IS THE DOM DOCUMENT ID
     321 ; ZOID IS THE DOM NODE
     322 D ATT("ZRTN",ZOID)
     323 Q
     324 ;
  • smart/trunk/p/C0SNHINV.m

    r1540 r1569  
    1 C0SNHINV        ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;
    4         ; External References          DBIA#
    5         ; -------------------          -----
    6         ; ^DPT                         10035
    7         ; ^SC                          10040
    8         ; DIQ                           2056
    9         ; MPIF001                       2701
    10         ; VASITE                       10112
    11         ; XLFDT                        10103
    12         ; XLFSTR                       10104
    13         ; XUAF4                         2171
    14         ;
    15 GET(NHIN,DFN,TYPE,START,STOP,MAX,ID)    ; -- Return search results as XML in @NHIN@(n)
    16         ; RPC = NHIN GET VISTA DATA
    17         N ICN,NHINI,NHINTOTL
    18         S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
    19         ;
    20         ; parse & validate input parameters
    21         S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
    22         I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
    23         I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
    24         S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
    25         S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
    26         I START,STOP,STOP<START N X S X=START,START=STOP,STOP=X  ;switch
    27         I STOP,$L(STOP,".")<2 S STOP=STOP_".24"
    28         S ID=$G(ID)
    29         ;
    30         ; extract data
    31         N NHINTYPE,NHINP,RTN
    32         S NHINTYPE=TYPE D ADD("<results>")
    33         F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
    34         . S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN))  ;D ERR(2) Q
    35         . D @(RTN_"(DFN,START,STOP,MAX,ID)")
    36         D ADD("</results>")
    37         ;
    38         I $G(NHINTOTL),$G(@NHIN@(1))="<results>" S @NHIN@(1)="<results total='"_NHINTOTL_"' >"
    39         ;
    40 GTQ     ; end
    41         Q
    42         ;
    43 RTN(X)  ; -- Return name of NHINVxxx routine for clinical domain X
    44         S X=$$UP^XLFSTR(X),Y="NHINV"
    45         I X="ACCESSION"    S Y="NHINVLRA"
    46         I X="ALLERGY"      S Y="NHINVART"
    47         I X="APPOINTMENT"  S Y="NHINVAPT"
    48         ; X="CONSULT"      S Y="NHINVCON"
    49         I X="DOCUMENT"     S Y="NHINVTIU"
    50         I X="IMMUNIZATION" S Y="NHINVIMM"
    51         I X="LAB"          S Y="NHINVLR"
    52         I X="PANEL"        S Y="NHINVLRO"
    53         I X="MED"          S Y="NHINVPS"
    54         I X="RX"           S Y="NHINVPSO"
    55         ; X="ORDER"        S Y="NHINVOR"
    56         I X="PATIENT"      S Y="NHINVPT"
    57         I X="PROBLEM"      S Y="NHINVPL"
    58         I X="PROCEDURE"    S Y="NHINVPRC"
    59         I X="SURGERY"      S Y="NHINVSR"
    60         I X="VISIT"        S Y="NHINVSIT"
    61         I X="VITAL"        S Y="NHINVIT"
    62         I X="RADIOLOGY"    S Y="NHINVRA"
    63         I X="NEW"          S Y="NHINVPR"
    64         Q Y
    65         ;
    66 ALL()   ; -- return string for all types of data
    67         ;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
    68         Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
    69         ;
    70 ERR(X,VAL)      ; -- return error message
    71         N MSG  S MSG="Error"
    72         I X=1  S MSG="Patient with dfn '"_$G(VAL)_"' not found"
    73         I X=2  S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
    74         I X=99 S MSG="Unknown request"
    75         ;
    76         D ADD("<error>")
    77         D ADD("<message>"_MSG_"</message>")
    78         D ADD("</error>")
    79         Q
    80         ;
    81 ESC(X)  ; -- escape outgoing XML
    82         ; Q $ZCONVERT(X,"O","HTML")  ; uncomment for fastest performance on Cache
    83         ;
    84         N I,Y,QOT S QOT=""""
    85         S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&amp;"_$P(X,"&",I)
    86         S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"&lt;"_$P(X,"<",I)
    87         S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_"&gt;"_$P(X,">",I)
    88         S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"&apos;"_$P(X,"'",I)
    89         S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"&quot;"_$P(X,QOT,I)
    90         Q Y
    91         ;
    92 ADD(X)  ; Add a line @NHIN@(n)=X
    93         S NHINI=$G(NHINI)+1
    94         S @NHIN@(NHINI)=X
    95         Q
    96         ;
    97 STRING(ARRAY)   ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
    98         N I,X,Y S Y=""
    99         S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
    100         S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
    101         F  S I=$O(ARRAY(I)) Q:I<1  D
    102         . S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
    103         . I $E(X)=" " S Y=Y_$C(13,10)_X Q
    104         . S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
    105         Q Y
    106         ;
    107 FAC(X)  ; -- return Institution file station# for location X
    108         N HLOC,FAC,Y0,Y S Y=""
    109         S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
    110         ; Get P:4 via Med Ctr Div, if not directly linked
    111         I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
    112         S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
    113         S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
    114         I $L(Y),'Y S $P(Y,U)=FAC
    115         Q Y
    116         ;
    117 VUID(IEN,FILE)  ; -- Return VUID for item
    118         Q $$GET1^DIQ(FILE,IEN_",",99.99)
     1C0SNHINV ;SLC/MKB - Serve VistA data as XML via RPC - Smart Container Version
     2 ;;1.0;C0S;**1**;Oct 25, 2010;Build 11
     3 ;
     4 ; External References          DBIA#
     5 ; -------------------          -----
     6 ; ^DPT                         10035
     7 ; ^SC                          10040
     8 ; DIQ                           2056
     9 ; MPIF001                       2701
     10 ; VASITE                       10112
     11 ; XLFDT                        10103
     12 ; XLFSTR                       10104
     13 ; XUAF4                         2171
     14 ;
     15GET(NHIN,DFN,TYPE,START,STOP,MAX,ID) ; -- Return search results as XML in @NHIN@(n)
     16 ; RPC = NHIN GET VISTA DATA
     17 N ICN,NHINI,NHINTOTL
     18 S NHIN=$NA(^TMP("NHINV",$J)) K @NHIN
     19 ;
     20 ; parse & validate input parameters
     21 S ICN=+$P(DFN,";",2),DFN=+$G(DFN)
     22 I 'DFN S DFN=+$$GETDFN^MPIF001(ICN)
     23 I DFN<1!'$D(^DPT(DFN)) D ERR(1,DFN) G GTQ
     24 S TYPE=$G(TYPE) I TYPE="" S TYPE=$$ALL
     25 S:'$G(START) START=1410101 S:'$G(STOP) STOP=9999998 S:'$G(MAX) MAX=9999
     26 I START,STOP,STOP<START N X S X=START,START=STOP,STOP=X  ;switch
     27 I STOP,$L(STOP,".")<2 S STOP=STOP_".24"
     28 S ID=$G(ID)
     29 ;
     30 ; extract data
     31 N NHINTYPE,NHINP,RTN
     32 S NHINTYPE=TYPE D ADD("<results>")
     33 F NHINP=1:1:$L(NHINTYPE,";") S TYPE=$P(NHINTYPE,";",NHINP) I $L(TYPE) D
     34 . S RTN="EN^"_$$RTN(TYPE) Q:'$L($T(@RTN))  ;D ERR(2) Q
     35 . D @(RTN_"(DFN,START,STOP,MAX,ID)")
     36 D ADD("</results>")
     37 ;
     38 I $G(NHINTOTL),$G(@NHIN@(1))="<results>" S @NHIN@(1)="<results total='"_NHINTOTL_"' >"
     39 ;
     40GTQ ; end
     41 Q
     42 ;
     43RTN(X) ; -- Return name of NHINVxxx routine for clinical domain X
     44 S X=$$UP^XLFSTR(X),Y="NHINV"
     45 I X="ACCESSION"    S Y="NHINVLRA"
     46 I X="ALLERGY"      S Y="NHINVART"
     47 I X="APPOINTMENT"  S Y="NHINVAPT"
     48 ; X="CONSULT"      S Y="NHINVCON"
     49 I X="DOCUMENT"     S Y="NHINVTIU"
     50 I X="IMMUNIZATION" S Y="NHINVIMM"
     51 I X="LAB"          S Y="NHINVLR"
     52 I X="PANEL"        S Y="NHINVLRO"
     53 I X="MED"          S Y="NHINVPS"
     54 I X="RX"           S Y="NHINVPSO"
     55 ; X="ORDER"        S Y="NHINVOR"
     56 I X="PATIENT"      S Y="NHINVPT"
     57 I X="PROBLEM"      S Y="NHINVPL"
     58 I X="PROCEDURE"    S Y="NHINVPRC"
     59 I X="SURGERY"      S Y="NHINVSR"
     60 I X="VISIT"        S Y="NHINVSIT"
     61 I X="VITAL"        S Y="NHINVIT"
     62 I X="RADIOLOGY"    S Y="NHINVRA"
     63 I X="NEW"          S Y="NHINVPR"
     64 Q Y
     65 ;
     66ALL() ; -- return string for all types of data
     67 ;Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;document;procedure"
     68 Q "patient;allergy;problem;vital;lab;med;immunization;visit;appointment;procedure"
     69 ;
     70ERR(X,VAL) ; -- return error message
     71 N MSG  S MSG="Error"
     72 I X=1  S MSG="Patient with dfn '"_$G(VAL)_"' not found"
     73 I X=2  S MSG="Requested domain type '"_$G(VAL)_"' not recognized"
     74 I X=99 S MSG="Unknown request"
     75 ;
     76 D ADD("<error>")
     77 D ADD("<message>"_MSG_"</message>")
     78 D ADD("</error>")
     79 Q
     80 ;
     81ESC(X) ; -- escape outgoing XML
     82 ; Q $ZCONVERT(X,"O","HTML")  ; uncomment for fastest performance on Cache
     83 ;
     84 N I,Y,QOT S QOT=""""
     85 S Y=$P(X,"&") F I=2:1:$L(X,"&") S Y=Y_"&amp;"_$P(X,"&",I)
     86 S X=Y,Y=$P(X,"<") F I=2:1:$L(X,"<") S Y=Y_"&lt;"_$P(X,"<",I)
     87 S X=Y,Y=$P(X,">") F I=2:1:$L(X,">") S Y=Y_"&gt;"_$P(X,">",I)
     88 S X=Y,Y=$P(X,"'") F I=2:1:$L(X,"'") S Y=Y_"&apos;"_$P(X,"'",I)
     89 S X=Y,Y=$P(X,QOT) F I=2:1:$L(X,QOT) S Y=Y_"&quot;"_$P(X,QOT,I)
     90 Q Y
     91 ;
     92ADD(X) ; Add a line @NHIN@(n)=X
     93 S NHINI=$G(NHINI)+1
     94 S @NHIN@(NHINI)=X
     95 Q
     96 ;
     97STRING(ARRAY) ; -- Return text in ARRAY(n) or ARRAY(n,0) as a string
     98 N I,X,Y S Y=""
     99 S I=+$O(ARRAY("")) I I=0 S I=+$O(ARRAY(0))
     100 S Y=$S($D(ARRAY(I,0)):ARRAY(I,0),1:$G(ARRAY(I)))
     101 F  S I=$O(ARRAY(I)) Q:I<1  D
     102 . S X=$S($D(ARRAY(I,0)):ARRAY(I,0),1:ARRAY(I))
     103 . I $E(X)=" " S Y=Y_$C(13,10)_X Q
     104 . S Y=Y_$S($E(Y,$L(Y))=" ":"",1:" ")_X
     105 Q Y
     106 ;
     107FAC(X) ; -- return Institution file station# for location X
     108 N HLOC,FAC,Y0,Y S Y=""
     109 S HLOC=$G(^SC(+$G(X),0)),FAC=$P(HLOC,U,4) ;Institution ien
     110 ; Get P:4 via Med Ctr Div, if not directly linked
     111 I 'FAC,$P(HLOC,U,15) S FAC=$$GET1^DIQ(40.8,+$P(HLOC,U,15)_",",.07,"I")
     112 S Y0=$S(FAC:$$NS^XUAF4(FAC),1:$P($$SITE^VASITE,U,2,3)) ;name^stn#
     113 S:$L(Y0) Y=$P(Y0,U,2)_U_$P(Y0,U) ;switch to stn#^name
     114 I $L(Y),'Y S $P(Y,U)=FAC
     115 Q Y
     116 ;
     117VUID(IEN,FILE) ; -- Return VUID for item
     118 Q $$GET1^DIQ(FILE,IEN_",",99.99)
  • smart/trunk/p/C0SPROB.m

    r1540 r1569  
    1 C0SPROB   ; GPL - Smart Problem Processing ;5/01/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22         ; sample VistA NHIN problem list
    23         ;
    24         ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
    25         ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
    26         ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
    27         ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
    28         ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
    29         ;^TMP("C0STBL",91,"problem",1,"id@value")=100
    30         ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
    31         ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
    32         ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
    33         ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
    34         ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
    35         ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
    36         ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
    37         ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
    38         ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
    39         ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
    40         ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
    41         ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
    42         ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
    43         ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
    44         ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
    45         ;^TMP("C0STBL",91,"problem",2,"id@value")=108
    46         ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
    47         ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
    48         ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
    49         ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
    50         ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
    51         ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
    52         ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
    53         ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
    54         ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
    55         ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
    56         ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
    57         ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
    58         ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
    59         ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
    60         ;^TMP("C0STBL",91,"problem",3,"id@value")=109
    61         ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
    62         ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
    63         ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
    64         ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
    65         ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
    66         ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
    67         ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
    68         ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
    69         ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
    70         ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
    71         ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
    72         ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
    73         ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
    74         ;^TMP("C0STBL",91,"problem",4,"id@value")=115
    75         ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
    76         ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
    77         ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
    78         ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
    79         ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
    80         ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
    81         ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
    82         ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
    83         ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
    84         ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
    85         ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
    86         ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
    87         ;^TMP("C0STBL",91,"problem",5,"id@value")=116
    88         ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
    89         ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
    90         ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
    91         ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
    92         ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
    93         ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
    94         ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
    95         ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
    96         ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
    97         ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
    98         ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
    99         ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
    100         ;^TMP("C0STBL",91,"problem",6,"id@value")=117
    101         ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
    102         ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
    103         ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
    104         ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
    105         ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
    106         ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
    107         ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
    108         ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
    109         ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
    110         ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
    111         ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
    112         ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
    113         ;^TMP("C0STBL",91,"problem",7,"id@value")=118
    114         ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
    115         ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
    116         ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
    117         ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
    118         ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
    119         ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
    120         ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
    121         ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
    122         ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
    123         ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
    124         ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
    125         ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
    126         ;^TMP("C0STBL",91,"problem",8,"id@value")=119
    127         ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
    128         ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
    129         ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
    130         ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
    131         ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
    132         ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
    133         ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
    134         ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
    135         ;
    136         ; sample Smart lab result triples
    137         ;
    138         ;G("node16rk1fgdvx10882","code")="snomed:40930008"
    139         ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
    140         ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
    141         ;G("node16rk1fgdvx11051","code")="snomed:188155002"
    142         ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
    143         ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
    144         ;G("node16rk1fgdvx11073","code")="snomed:353295004"
    145         ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
    146         ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
    147         ;G("node16rk1fgdvx11089","code")="snomed:54302000"
    148         ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
    149         ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
    150         ;G("node16rk1fgdvx11351","code")="snomed:38341003"
    151         ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
    152         ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
    153         ;G("node16rk1fgdvx11390","code")="snomed:44054006"
    154         ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
    155         ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
    156         ;G("node16rk1fgdvx11558","code")="snomed:195967001"
    157         ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
    158         ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
    159         ;G("node16rk1fgdvx11578","code")="snomed:254837009"
    160         ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
    161         ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
    162         ;G("node16rk1fgdvx11687","code")="snomed:8517006"
    163         ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
    164         ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
    165         ;G("node16rk1fgdvx11716","code")="snomed:55822004"
    166         ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
    167         ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
    168         ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
    169         ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
    170         ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
    171         ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
    172         ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
    173         ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
    174         ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
    175         ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
    176         ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
    177         ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
    178         ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
    179         ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
    180         ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
    181         ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
    182         ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
    183         ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
    184         ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
    185         ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
    186         ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
    187         ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
    188         ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
    189         ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
    190         ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
    191         ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
    192         ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
    193         ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
    194         ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
    195         ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
    196         ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
    197         ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
    198         ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
    199         ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
    200         ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
    201         ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
    202         ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
    203         ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
    204         ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
    205         ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
    206         ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
    207         ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
    208         ;G("snomed:188155002","dcterms:identifier")=188155002
    209         ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
    210         ;G("snomed:188155002","rdf:type")="sp:Code"
    211         ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    212         ;G("snomed:195967001","dcterms:identifier")=195967001
    213         ;G("snomed:195967001","dcterms:title")="Asthma"
    214         ;G("snomed:195967001","rdf:type")="sp:Code"
    215         ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    216         ;G("snomed:254837009","dcterms:identifier")=254837009
    217         ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
    218         ;G("snomed:254837009","rdf:type")="sp:Code"
    219         ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    220         ;G("snomed:353295004","dcterms:identifier")=353295004
    221         ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
    222         ;G("snomed:353295004","rdf:type")="sp:Code"
    223         ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    224         ;G("snomed:38341003","dcterms:identifier")=38341003
    225         ;G("snomed:38341003","dcterms:title")="Essential hypertension"
    226         ;G("snomed:38341003","rdf:type")="sp:Code"
    227         ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    228         ;G("snomed:40930008","dcterms:identifier")=40930008
    229         ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
    230         ;G("snomed:40930008","rdf:type")="sp:Code"
    231         ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    232         ;G("snomed:44054006","dcterms:identifier")=44054006
    233         ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
    234         ;G("snomed:44054006","rdf:type")="sp:Code"
    235         ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    236         ;G("snomed:54302000","dcterms:identifier")=54302000
    237         ;G("snomed:54302000","dcterms:title")="Disorder of breast"
    238         ;G("snomed:54302000","rdf:type")="sp:Code"
    239         ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    240         ;G("snomed:55822004","dcterms:identifier")=55822004
    241         ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
    242         ;G("snomed:55822004","rdf:type")="sp:Code"
    243         ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    244         ;G("snomed:8517006","dcterms:identifier")=8517006
    245         ;G("snomed:8517006","dcterms:title")="History of tobacco use"
    246         ;G("snomed:8517006","rdf:type")="sp:Code"
    247         ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
    248        
    249         ;
    250 PROB(GRTN,C0SARY)       ; GRTN, passed by reference,
    251         ; is the return name of the graph created. "" if none
    252         ; C0SARY is passed in by reference and is the NHIN array of problems
    253         ;
    254         I $O(C0SARY("problem",""))="" D  Q  ;
    255         . I $D(DEBUG) W !,"No Problems"
    256         S GRTN="" ; default to no problems
    257         N C0SGRF
    258         S C0SGRF="vistaSmart:"_ZPATID_"/problems"
    259         I $D(DEBUG) W !,"Processing ",C0SGRF
    260         D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
    261         D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
    262         N FARY S FARY="C0XFARY"
    263         D USEFARY^C0XF2N(FARY)
    264         D VOCINIT^C0XUTIL
    265         ;
    266         D STARTADD^C0XF2N ; initialize to create triples
    267         ;
    268         N ZI S ZI=""
    269         F  S ZI=$O(C0SARY("problem",ZI)) Q:ZI=""  D  ;
    270         . N LRN,ZR ; ZR is the local array for building the new triples
    271         . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
    272         . ;
    273         . N PROBID ; unique Id for this problem
    274         . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
    275         . ;
    276         . ; i don't like this because the same problems gets a
    277         . ; different ID every time it's reported. Can't trace it back to VistA
    278         . ; I'd rather be using id@value ie "id@value")="118"
    279         . ;
    280         . N SNOMED S SNOMED=$G(@LRN@("icd@value"))
    281         . N SNOGRF S SNOGRF="snomed:"_SNOMED
    282         . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
    283         . I $D(DEBUG) D  ;
    284         . . W !,"Processing Problem List ",PROBID
    285         . . W !,"problem: ",SNOTIT
    286         . . W !,"code: ",SNOMED
    287         . ;
    288         . ; first do the base result graph
    289         . ;
    290         . S ZR("rdf:type")="sp:Problem"
    291         . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
    292         . ; ie /vista/smart/99912345/problems
    293         . ;
    294         . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
    295         . S ZR("sp:problemName")=PROBNAME
    296         . ;
    297         . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
    298         . S ZR("sp:startDate")=STARTDT
    299         . ;
    300         . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
    301         . K ZR ; clean up
    302         . ;
    303         . ; create the problemName graph
    304         . ;
    305         . S ZR("rdf:type")="sp:CodedValue"
    306         . S ZR("sp:code")="snomed:"_SNOMED
    307         . S ZR("dcterms:title")=$G(@LRN@("name@value"))
    308         . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
    309         . K ZR
    310         . ;
    311         . ; create snomed graph
    312         . ;
    313         . S ZR("rdf:type")="sp:Code"
    314         . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    315         . S ZR("dcterms:identifier")=SNOMED
    316         . S ZR("dcterms:title")=SNOTIT
    317         . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
    318         . K ZR
    319         . ;
    320         D BULKLOAD^C0XF2N(.C0XFDA)
    321         S GRTN=C0SGRF
    322         Q
    323         ;
     1C0SPROB   ; GPL - Smart Problem Processing ;5/01/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22 ; sample VistA NHIN problem list
     23 ;
     24 ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
     25 ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
     26 ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
     27 ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
     28 ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
     29 ;^TMP("C0STBL",91,"problem",1,"id@value")=100
     30 ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
     31 ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
     32 ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
     33 ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
     34 ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
     35 ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
     36 ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
     37 ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
     38 ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
     39 ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
     40 ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
     41 ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
     42 ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
     43 ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
     44 ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
     45 ;^TMP("C0STBL",91,"problem",2,"id@value")=108
     46 ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
     47 ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
     48 ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
     49 ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
     50 ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
     51 ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
     52 ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
     53 ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
     54 ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
     55 ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
     56 ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
     57 ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
     58 ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
     59 ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
     60 ;^TMP("C0STBL",91,"problem",3,"id@value")=109
     61 ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
     62 ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
     63 ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
     64 ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
     65 ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
     66 ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
     67 ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
     68 ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
     69 ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
     70 ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
     71 ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
     72 ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
     73 ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
     74 ;^TMP("C0STBL",91,"problem",4,"id@value")=115
     75 ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
     76 ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
     77 ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
     78 ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
     79 ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
     80 ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
     81 ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
     82 ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
     83 ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
     84 ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
     85 ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
     86 ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
     87 ;^TMP("C0STBL",91,"problem",5,"id@value")=116
     88 ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
     89 ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
     90 ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
     91 ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
     92 ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
     93 ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
     94 ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
     95 ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
     96 ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
     97 ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
     98 ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
     99 ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
     100 ;^TMP("C0STBL",91,"problem",6,"id@value")=117
     101 ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
     102 ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
     103 ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
     104 ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
     105 ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
     106 ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
     107 ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
     108 ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
     109 ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
     110 ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
     111 ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
     112 ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
     113 ;^TMP("C0STBL",91,"problem",7,"id@value")=118
     114 ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
     115 ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
     116 ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
     117 ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
     118 ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
     119 ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
     120 ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
     121 ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
     122 ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
     123 ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
     124 ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
     125 ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
     126 ;^TMP("C0STBL",91,"problem",8,"id@value")=119
     127 ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
     128 ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
     129 ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
     130 ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
     131 ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
     132 ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
     133 ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
     134 ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
     135 ;
     136 ; sample Smart lab result triples
     137 ;
     138 ;G("node16rk1fgdvx10882","code")="snomed:40930008"
     139 ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
     140 ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
     141 ;G("node16rk1fgdvx11051","code")="snomed:188155002"
     142 ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
     143 ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
     144 ;G("node16rk1fgdvx11073","code")="snomed:353295004"
     145 ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
     146 ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
     147 ;G("node16rk1fgdvx11089","code")="snomed:54302000"
     148 ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
     149 ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
     150 ;G("node16rk1fgdvx11351","code")="snomed:38341003"
     151 ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
     152 ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
     153 ;G("node16rk1fgdvx11390","code")="snomed:44054006"
     154 ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
     155 ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
     156 ;G("node16rk1fgdvx11558","code")="snomed:195967001"
     157 ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
     158 ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
     159 ;G("node16rk1fgdvx11578","code")="snomed:254837009"
     160 ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
     161 ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
     162 ;G("node16rk1fgdvx11687","code")="snomed:8517006"
     163 ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
     164 ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
     165 ;G("node16rk1fgdvx11716","code")="snomed:55822004"
     166 ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
     167 ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
     168 ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
     169 ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
     170 ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
     171 ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
     172 ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
     173 ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
     174 ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
     175 ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
     176 ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
     177 ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
     178 ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
     179 ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
     180 ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
     181 ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
     182 ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
     183 ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
     184 ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
     185 ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
     186 ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
     187 ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
     188 ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
     189 ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
     190 ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
     191 ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
     192 ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
     193 ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
     194 ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
     195 ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
     196 ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
     197 ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
     198 ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
     199 ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
     200 ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
     201 ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
     202 ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
     203 ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
     204 ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
     205 ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
     206 ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
     207 ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
     208 ;G("snomed:188155002","dcterms:identifier")=188155002
     209 ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
     210 ;G("snomed:188155002","rdf:type")="sp:Code"
     211 ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     212 ;G("snomed:195967001","dcterms:identifier")=195967001
     213 ;G("snomed:195967001","dcterms:title")="Asthma"
     214 ;G("snomed:195967001","rdf:type")="sp:Code"
     215 ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     216 ;G("snomed:254837009","dcterms:identifier")=254837009
     217 ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
     218 ;G("snomed:254837009","rdf:type")="sp:Code"
     219 ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     220 ;G("snomed:353295004","dcterms:identifier")=353295004
     221 ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
     222 ;G("snomed:353295004","rdf:type")="sp:Code"
     223 ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     224 ;G("snomed:38341003","dcterms:identifier")=38341003
     225 ;G("snomed:38341003","dcterms:title")="Essential hypertension"
     226 ;G("snomed:38341003","rdf:type")="sp:Code"
     227 ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     228 ;G("snomed:40930008","dcterms:identifier")=40930008
     229 ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
     230 ;G("snomed:40930008","rdf:type")="sp:Code"
     231 ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     232 ;G("snomed:44054006","dcterms:identifier")=44054006
     233 ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
     234 ;G("snomed:44054006","rdf:type")="sp:Code"
     235 ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     236 ;G("snomed:54302000","dcterms:identifier")=54302000
     237 ;G("snomed:54302000","dcterms:title")="Disorder of breast"
     238 ;G("snomed:54302000","rdf:type")="sp:Code"
     239 ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     240 ;G("snomed:55822004","dcterms:identifier")=55822004
     241 ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
     242 ;G("snomed:55822004","rdf:type")="sp:Code"
     243 ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     244 ;G("snomed:8517006","dcterms:identifier")=8517006
     245 ;G("snomed:8517006","dcterms:title")="History of tobacco use"
     246 ;G("snomed:8517006","rdf:type")="sp:Code"
     247 ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
     248
     249 ;
     250PROB(GRTN,C0SARY) ; GRTN, passed by reference,
     251 ; is the return name of the graph created. "" if none
     252 ; C0SARY is passed in by reference and is the NHIN array of problems
     253 ;
     254 I $O(C0SARY("problem",""))="" D  Q  ;
     255 . I $D(DEBUG) W !,"No Problems"
     256 S GRTN="" ; default to no problems
     257 N C0SGRF
     258 S C0SGRF="vistaSmart:"_ZPATID_"/problems"
     259 I $D(DEBUG) W !,"Processing ",C0SGRF
     260 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
     261 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
     262 N FARY S FARY="C0XFARY"
     263 D USEFARY^C0XF2N(FARY)
     264 D VOCINIT^C0XUTIL
     265 ;
     266 D STARTADD^C0XF2N ; initialize to create triples
     267 ;
     268 N ZI S ZI=""
     269 F  S ZI=$O(C0SARY("problem",ZI)) Q:ZI=""  D  ;
     270 . N LRN,ZR ; ZR is the local array for building the new triples
     271 . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
     272 . ;
     273 . N PROBID ; unique Id for this problem
     274 . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
     275 . ;
     276 . ; i don't like this because the same problems gets a
     277 . ; different ID every time it's reported. Can't trace it back to VistA
     278 . ; I'd rather be using id@value ie "id@value")="118"
     279 . ;
     280 . N SNOMED S SNOMED=$G(@LRN@("icd@value"))
     281 . N SNOGRF S SNOGRF="snomed:"_SNOMED
     282 . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
     283 . I $D(DEBUG) D  ;
     284 . . W !,"Processing Problem List ",PROBID
     285 . . W !,"problem: ",SNOTIT
     286 . . W !,"code: ",SNOMED
     287 . ;
     288 . ; first do the base result graph
     289 . ;
     290 . S ZR("rdf:type")="sp:Problem"
     291 . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
     292 . ; ie /vista/smart/99912345/problems
     293 . ;
     294 . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
     295 . S ZR("sp:problemName")=PROBNAME
     296 . ;
     297 . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
     298 . S ZR("sp:startDate")=STARTDT
     299 . ;
     300 . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
     301 . K ZR ; clean up
     302 . ;
     303 . ; create the problemName graph
     304 . ;
     305 . S ZR("rdf:type")="sp:CodedValue"
     306 . S ZR("sp:code")="snomed:"_SNOMED
     307 . S ZR("dcterms:title")=$G(@LRN@("name@value"))
     308 . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
     309 . K ZR
     310 . ;
     311 . ; create snomed graph
     312 . ;
     313 . S ZR("rdf:type")="sp:Code"
     314 . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     315 . S ZR("dcterms:identifier")=SNOMED
     316 . S ZR("dcterms:title")=SNOTIT
     317 . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
     318 . K ZR
     319 . ;
     320 D BULKLOAD^C0XF2N(.C0XFDA)
     321 S GRTN=C0SGRF
     322 Q
     323 ;
  • smart/trunk/p/C0SPROB2.m

    r1540 r1569  
    1 C0SPROB   ; GPL - Smart Problem Processing ;5/01/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22         ; sample VistA NHIN problem list
    23         ;
    24         ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
    25         ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
    26         ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
    27         ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
    28         ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
    29         ;^TMP("C0STBL",91,"problem",1,"id@value")=100
    30         ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
    31         ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
    32         ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
    33         ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
    34         ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
    35         ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
    36         ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
    37         ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
    38         ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
    39         ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
    40         ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
    41         ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
    42         ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
    43         ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
    44         ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
    45         ;^TMP("C0STBL",91,"problem",2,"id@value")=108
    46         ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
    47         ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
    48         ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
    49         ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
    50         ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
    51         ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
    52         ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
    53         ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
    54         ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
    55         ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
    56         ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
    57         ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
    58         ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
    59         ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
    60         ;^TMP("C0STBL",91,"problem",3,"id@value")=109
    61         ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
    62         ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
    63         ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
    64         ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
    65         ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
    66         ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
    67         ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
    68         ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
    69         ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
    70         ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
    71         ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
    72         ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
    73         ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
    74         ;^TMP("C0STBL",91,"problem",4,"id@value")=115
    75         ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
    76         ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
    77         ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
    78         ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
    79         ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
    80         ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
    81         ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
    82         ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
    83         ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
    84         ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
    85         ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
    86         ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
    87         ;^TMP("C0STBL",91,"problem",5,"id@value")=116
    88         ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
    89         ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
    90         ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
    91         ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
    92         ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
    93         ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
    94         ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
    95         ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
    96         ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
    97         ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
    98         ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
    99         ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
    100         ;^TMP("C0STBL",91,"problem",6,"id@value")=117
    101         ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
    102         ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
    103         ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
    104         ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
    105         ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
    106         ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
    107         ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
    108         ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
    109         ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
    110         ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
    111         ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
    112         ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
    113         ;^TMP("C0STBL",91,"problem",7,"id@value")=118
    114         ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
    115         ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
    116         ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
    117         ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
    118         ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
    119         ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
    120         ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
    121         ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
    122         ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
    123         ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
    124         ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
    125         ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
    126         ;^TMP("C0STBL",91,"problem",8,"id@value")=119
    127         ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
    128         ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
    129         ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
    130         ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
    131         ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
    132         ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
    133         ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
    134         ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
    135         ;
    136         ; sample Smart lab result triples
    137         ;
    138         ;G("node16rk1fgdvx10882","code")="snomed:40930008"
    139         ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
    140         ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
    141         ;G("node16rk1fgdvx11051","code")="snomed:188155002"
    142         ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
    143         ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
    144         ;G("node16rk1fgdvx11073","code")="snomed:353295004"
    145         ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
    146         ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
    147         ;G("node16rk1fgdvx11089","code")="snomed:54302000"
    148         ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
    149         ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
    150         ;G("node16rk1fgdvx11351","code")="snomed:38341003"
    151         ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
    152         ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
    153         ;G("node16rk1fgdvx11390","code")="snomed:44054006"
    154         ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
    155         ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
    156         ;G("node16rk1fgdvx11558","code")="snomed:195967001"
    157         ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
    158         ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
    159         ;G("node16rk1fgdvx11578","code")="snomed:254837009"
    160         ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
    161         ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
    162         ;G("node16rk1fgdvx11687","code")="snomed:8517006"
    163         ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
    164         ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
    165         ;G("node16rk1fgdvx11716","code")="snomed:55822004"
    166         ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
    167         ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
    168         ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
    169         ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
    170         ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
    171         ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
    172         ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
    173         ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
    174         ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
    175         ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
    176         ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
    177         ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
    178         ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
    179         ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
    180         ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
    181         ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
    182         ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
    183         ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
    184         ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
    185         ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
    186         ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
    187         ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
    188         ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
    189         ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
    190         ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
    191         ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
    192         ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
    193         ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
    194         ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
    195         ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
    196         ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
    197         ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
    198         ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
    199         ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
    200         ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
    201         ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
    202         ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
    203         ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
    204         ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
    205         ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
    206         ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
    207         ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
    208         ;G("snomed:188155002","dcterms:identifier")=188155002
    209         ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
    210         ;G("snomed:188155002","rdf:type")="sp:Code"
    211         ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    212         ;G("snomed:195967001","dcterms:identifier")=195967001
    213         ;G("snomed:195967001","dcterms:title")="Asthma"
    214         ;G("snomed:195967001","rdf:type")="sp:Code"
    215         ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    216         ;G("snomed:254837009","dcterms:identifier")=254837009
    217         ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
    218         ;G("snomed:254837009","rdf:type")="sp:Code"
    219         ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    220         ;G("snomed:353295004","dcterms:identifier")=353295004
    221         ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
    222         ;G("snomed:353295004","rdf:type")="sp:Code"
    223         ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    224         ;G("snomed:38341003","dcterms:identifier")=38341003
    225         ;G("snomed:38341003","dcterms:title")="Essential hypertension"
    226         ;G("snomed:38341003","rdf:type")="sp:Code"
    227         ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    228         ;G("snomed:40930008","dcterms:identifier")=40930008
    229         ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
    230         ;G("snomed:40930008","rdf:type")="sp:Code"
    231         ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    232         ;G("snomed:44054006","dcterms:identifier")=44054006
    233         ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
    234         ;G("snomed:44054006","rdf:type")="sp:Code"
    235         ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    236         ;G("snomed:54302000","dcterms:identifier")=54302000
    237         ;G("snomed:54302000","dcterms:title")="Disorder of breast"
    238         ;G("snomed:54302000","rdf:type")="sp:Code"
    239         ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    240         ;G("snomed:55822004","dcterms:identifier")=55822004
    241         ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
    242         ;G("snomed:55822004","rdf:type")="sp:Code"
    243         ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    244         ;G("snomed:8517006","dcterms:identifier")=8517006
    245         ;G("snomed:8517006","dcterms:title")="History of tobacco use"
    246         ;G("snomed:8517006","rdf:type")="sp:Code"
    247         ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
    248        
    249         ;
    250 PROB(GRTN,C0SARY)       ; GRTN, passed by reference,
    251         ; is the return name of the graph created. "" if none
    252         ; C0SARY is passed in by reference and is the NHIN array of problems
    253         ;
    254         I $O(C0SARY("problem",""))="" D  Q  ;
    255         . I $D(DEBUG) W !,"No Problems"
    256         S GRTN="" ; default to no problems
    257         N C0SGRF
    258         S C0SGRF="vistaSmart:"_ZPATID_"/problems"
    259         I $D(DEBUG) W !,"Processing ",C0SGRF
    260         D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
    261         D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
    262         N FARY S FARY="C0XFARY"
    263         D USEFARY^C0XF2N(FARY)
    264         D VOCINIT^C0XUTIL
    265         ;
    266         D STARTADD^C0XF2N ; initialize to create triples
    267         ;
    268         N ZI S ZI=""
    269         F  S ZI=$O(C0SARY("problem",ZI)) Q:ZI=""  D  ;
    270         . N LRN,ZR ; ZR is the local array for building the new triples
    271         . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
    272         . ;
    273         . N PROBID ; unique Id for this problem
    274         . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
    275         . ;
    276         . ; i don't like this because the same problems gets a
    277         . ; different ID every time it's reported. Can't trace it back to VistA
    278         . ; I'd rather be using id@value ie "id@value")="118"
    279         . ;
    280         . N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
    281         . S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
    282         . N SNOGRF ; graph for SNOMED code
    283         . I SNOMED="" D  ;
    284         . . S SNOMED=ICD ; if not found, return the ICD code
    285         . . S SNOGRF="icd9:"_SNOMED
    286         . E  S SNOGRF="snomed:"_SNOMED
    287         . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
    288         . I $D(DEBUG) D  ;
    289         . . W !,"Processing Problem List ",PROBID
    290         . . W !,"problem: ",SNOTIT
    291         . . W !,"code: ",SNOMED
    292         . ;
    293         . ; first do the base result graph
    294         . ;
    295         . S ZR("rdf:type")="sp:Problem"
    296         . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
    297         . ; ie /vista/smart/99912345/problems
    298         . ;
    299         . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
    300         . S ZR("sp:problemName")=PROBNAME
    301         . ;
    302         . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
    303         . S ZR("sp:startDate")=STARTDT
    304         . ;
    305         . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
    306         . K ZR ; clean up
    307         . ;
    308         . ; create the problemName graph
    309         . ;
    310         . S ZR("rdf:type")="sp:CodedValue"
    311         . ;S ZR("sp:code")="snomed:"_SNOMED
    312         . S ZR("sp:code")=SNOGRF
    313         . S ZR("dcterms:title")=$G(@LRN@("name@value"))
    314         . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
    315         . K ZR
    316         . ;
    317         . ; create snomed graph
    318         . ;
    319         . S ZR("rdf:type")="sp:Code"
    320         . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
    321         . I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
    322         . S ZR("dcterms:identifier")=SNOMED
    323         . S ZR("dcterms:title")=SNOTIT
    324         . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
    325         . K ZR
    326         . ;
    327         D BULKLOAD^C0XF2N(.C0XFDA)
    328         S GRTN=C0SGRF
    329         Q
    330         ;
    331 SNOMED(ZICD)    ; extrinsic which returns SNOMED code given an ICD9 code
    332         ; requires the mapping table installed in the triplestore
    333         ;
    334         N ZSN,ZARY,ZSUB,ZSUBS
    335         I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
    336         D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
    337         S ZSUB=$O(ZSUBS("")) ; pick the first one
    338         I ZSUB="" Q ""
    339         D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
    340         S ZSN=$O(ZARY(""))
    341         I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
    342         Q ZSN
    343         ;
     1C0SPROB   ; GPL - Smart Problem Processing ;5/01/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22 ; sample VistA NHIN problem list
     23 ;
     24 ;^TMP("C0STBL",91,"problem",1,"acuity@value")="C"
     25 ;^TMP("C0STBL",91,"problem",1,"entered@value")=3110531
     26 ;^TMP("C0STBL",91,"problem",1,"facility@code")=100
     27 ;^TMP("C0STBL",91,"problem",1,"facility@name")="VOE OFFICE INSTITUTION"
     28 ;^TMP("C0STBL",91,"problem",1,"icd@value")=414.9
     29 ;^TMP("C0STBL",91,"problem",1,"id@value")=100
     30 ;^TMP("C0STBL",91,"problem",1,"location@value")="DR OFFICE"
     31 ;^TMP("C0STBL",91,"problem",1,"name@value")="Coronary Artery Disease"
     32 ;^TMP("C0STBL",91,"problem",1,"onset@value")=3100201
     33 ;^TMP("C0STBL",91,"problem",1,"provider@code")=63
     34 ;^TMP("C0STBL",91,"problem",1,"provider@name")="KING,MATTHEW MICHAEL"
     35 ;^TMP("C0STBL",91,"problem",1,"removed@value")=0
     36 ;^TMP("C0STBL",91,"problem",1,"sc@value")=0
     37 ;^TMP("C0STBL",91,"problem",1,"status@value")="A"
     38 ;^TMP("C0STBL",91,"problem",1,"unverified@value")=0
     39 ;^TMP("C0STBL",91,"problem",1,"updated@value")=3110531
     40 ;^TMP("C0STBL",91,"problem",2,"acuity@value")="C"
     41 ;^TMP("C0STBL",91,"problem",2,"entered@value")=3110602
     42 ;^TMP("C0STBL",91,"problem",2,"facility@code")=100
     43 ;^TMP("C0STBL",91,"problem",2,"facility@name")="VOE OFFICE INSTITUTION"
     44 ;^TMP("C0STBL",91,"problem",2,"icd@value")=780.2
     45 ;^TMP("C0STBL",91,"problem",2,"id@value")=108
     46 ;^TMP("C0STBL",91,"problem",2,"name@value")="Syncope and collapse"
     47 ;^TMP("C0STBL",91,"problem",2,"onset@value")=3110102
     48 ;^TMP("C0STBL",91,"problem",2,"provider@code")=63
     49 ;^TMP("C0STBL",91,"problem",2,"provider@name")="KING,MATTHEW MICHAEL"
     50 ;^TMP("C0STBL",91,"problem",2,"removed@value")=0
     51 ;^TMP("C0STBL",91,"problem",2,"sc@value")=0
     52 ;^TMP("C0STBL",91,"problem",2,"status@value")="A"
     53 ;^TMP("C0STBL",91,"problem",2,"unverified@value")=0
     54 ;^TMP("C0STBL",91,"problem",2,"updated@value")=3110602
     55 ;^TMP("C0STBL",91,"problem",3,"acuity@value")="C"
     56 ;^TMP("C0STBL",91,"problem",3,"entered@value")=3110602
     57 ;^TMP("C0STBL",91,"problem",3,"facility@code")=100
     58 ;^TMP("C0STBL",91,"problem",3,"facility@name")="VOE OFFICE INSTITUTION"
     59 ;^TMP("C0STBL",91,"problem",3,"icd@value")=433.91
     60 ;^TMP("C0STBL",91,"problem",3,"id@value")=109
     61 ;^TMP("C0STBL",91,"problem",3,"name@value")="Occlusion and Stenosis of Unspecifid Precerebral Artery with Cerebral Infarctio"
     62 ;^TMP("C0STBL",91,"problem",3,"onset@value")=3100101
     63 ;^TMP("C0STBL",91,"problem",3,"provider@code")=63
     64 ;^TMP("C0STBL",91,"problem",3,"provider@name")="KING,MATTHEW MICHAEL"
     65 ;^TMP("C0STBL",91,"problem",3,"removed@value")=0
     66 ;^TMP("C0STBL",91,"problem",3,"sc@value")=0
     67 ;^TMP("C0STBL",91,"problem",3,"status@value")="A"
     68 ;^TMP("C0STBL",91,"problem",3,"unverified@value")=0
     69 ;^TMP("C0STBL",91,"problem",3,"updated@value")=3110602
     70 ;^TMP("C0STBL",91,"problem",4,"entered@value")=3110603
     71 ;^TMP("C0STBL",91,"problem",4,"facility@code")=100
     72 ;^TMP("C0STBL",91,"problem",4,"facility@name")="VOE OFFICE INSTITUTION"
     73 ;^TMP("C0STBL",91,"problem",4,"icd@value")="00.66"
     74 ;^TMP("C0STBL",91,"problem",4,"id@value")=115
     75 ;^TMP("C0STBL",91,"problem",4,"location@value")="DR OFFICE"
     76 ;^TMP("C0STBL",91,"problem",4,"name@value")="00.66"
     77 ;^TMP("C0STBL",91,"problem",4,"provider@code")=63
     78 ;^TMP("C0STBL",91,"problem",4,"provider@name")="KING,MATTHEW MICHAEL"
     79 ;^TMP("C0STBL",91,"problem",4,"removed@value")=0
     80 ;^TMP("C0STBL",91,"problem",4,"status@value")="A"
     81 ;^TMP("C0STBL",91,"problem",4,"unverified@value")=0
     82 ;^TMP("C0STBL",91,"problem",4,"updated@value")=3110603
     83 ;^TMP("C0STBL",91,"problem",5,"entered@value")=3110603
     84 ;^TMP("C0STBL",91,"problem",5,"facility@code")=100
     85 ;^TMP("C0STBL",91,"problem",5,"facility@name")="VOE OFFICE INSTITUTION"
     86 ;^TMP("C0STBL",91,"problem",5,"icd@value")=37.21
     87 ;^TMP("C0STBL",91,"problem",5,"id@value")=116
     88 ;^TMP("C0STBL",91,"problem",5,"location@value")="DR OFFICE"
     89 ;^TMP("C0STBL",91,"problem",5,"name@value")=37.21
     90 ;^TMP("C0STBL",91,"problem",5,"provider@code")=63
     91 ;^TMP("C0STBL",91,"problem",5,"provider@name")="KING,MATTHEW MICHAEL"
     92 ;^TMP("C0STBL",91,"problem",5,"removed@value")=0
     93 ;^TMP("C0STBL",91,"problem",5,"status@value")="A"
     94 ;^TMP("C0STBL",91,"problem",5,"unverified@value")=0
     95 ;^TMP("C0STBL",91,"problem",5,"updated@value")=3110603
     96 ;^TMP("C0STBL",91,"problem",6,"entered@value")=3110603
     97 ;^TMP("C0STBL",91,"problem",6,"facility@code")=100
     98 ;^TMP("C0STBL",91,"problem",6,"facility@name")="VOE OFFICE INSTITUTION"
     99 ;^TMP("C0STBL",91,"problem",6,"icd@value")=81.51
     100 ;^TMP("C0STBL",91,"problem",6,"id@value")=117
     101 ;^TMP("C0STBL",91,"problem",6,"location@value")="DR OFFICE"
     102 ;^TMP("C0STBL",91,"problem",6,"name@value")=81.51
     103 ;^TMP("C0STBL",91,"problem",6,"provider@code")=63
     104 ;^TMP("C0STBL",91,"problem",6,"provider@name")="KING,MATTHEW MICHAEL"
     105 ;^TMP("C0STBL",91,"problem",6,"removed@value")=0
     106 ;^TMP("C0STBL",91,"problem",6,"status@value")="A"
     107 ;^TMP("C0STBL",91,"problem",6,"unverified@value")=0
     108 ;^TMP("C0STBL",91,"problem",6,"updated@value")=3110603
     109 ;^TMP("C0STBL",91,"problem",7,"entered@value")=3110603
     110 ;^TMP("C0STBL",91,"problem",7,"facility@code")=100
     111 ;^TMP("C0STBL",91,"problem",7,"facility@name")="VOE OFFICE INSTITUTION"
     112 ;^TMP("C0STBL",91,"problem",7,"icd@value")=47.09
     113 ;^TMP("C0STBL",91,"problem",7,"id@value")=118
     114 ;^TMP("C0STBL",91,"problem",7,"location@value")="DR OFFICE"
     115 ;^TMP("C0STBL",91,"problem",7,"name@value")=47.09
     116 ;^TMP("C0STBL",91,"problem",7,"provider@code")=63
     117 ;^TMP("C0STBL",91,"problem",7,"provider@name")="KING,MATTHEW MICHAEL"
     118 ;^TMP("C0STBL",91,"problem",7,"removed@value")=0
     119 ;^TMP("C0STBL",91,"problem",7,"status@value")="A"
     120 ;^TMP("C0STBL",91,"problem",7,"unverified@value")=0
     121 ;^TMP("C0STBL",91,"problem",7,"updated@value")=3110603
     122 ;^TMP("C0STBL",91,"problem",8,"entered@value")=3110603
     123 ;^TMP("C0STBL",91,"problem",8,"facility@code")=100
     124 ;^TMP("C0STBL",91,"problem",8,"facility@name")="VOE OFFICE INSTITUTION"
     125 ;^TMP("C0STBL",91,"problem",8,"icd@value")="250.00"
     126 ;^TMP("C0STBL",91,"problem",8,"id@value")=119
     127 ;^TMP("C0STBL",91,"problem",8,"location@value")="DR OFFICE"
     128 ;^TMP("C0STBL",91,"problem",8,"name@value")="Diabetes Mellitus without mentionof Complication, type II or unspecified type,"
     129 ;^TMP("C0STBL",91,"problem",8,"provider@code")=63
     130 ;^TMP("C0STBL",91,"problem",8,"provider@name")="KING,MATTHEW MICHAEL"
     131 ;^TMP("C0STBL",91,"problem",8,"removed@value")=0
     132 ;^TMP("C0STBL",91,"problem",8,"status@value")="A"
     133 ;^TMP("C0STBL",91,"problem",8,"unverified@value")=0
     134 ;^TMP("C0STBL",91,"problem",8,"updated@value")=3110603
     135 ;
     136 ; sample Smart lab result triples
     137 ;
     138 ;G("node16rk1fgdvx10882","code")="snomed:40930008"
     139 ;G("node16rk1fgdvx10882","dcterms:title")="Hypothyroidism"
     140 ;G("node16rk1fgdvx10882","rdf:type")="sp:CodedValue"
     141 ;G("node16rk1fgdvx11051","code")="snomed:188155002"
     142 ;G("node16rk1fgdvx11051","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
     143 ;G("node16rk1fgdvx11051","rdf:type")="sp:CodedValue"
     144 ;G("node16rk1fgdvx11073","code")="snomed:353295004"
     145 ;G("node16rk1fgdvx11073","dcterms:title")="Toxic diffuse goiter"
     146 ;G("node16rk1fgdvx11073","rdf:type")="sp:CodedValue"
     147 ;G("node16rk1fgdvx11089","code")="snomed:54302000"
     148 ;G("node16rk1fgdvx11089","dcterms:title")="Disorder of breast"
     149 ;G("node16rk1fgdvx11089","rdf:type")="sp:CodedValue"
     150 ;G("node16rk1fgdvx11351","code")="snomed:38341003"
     151 ;G("node16rk1fgdvx11351","dcterms:title")="Essential hypertension"
     152 ;G("node16rk1fgdvx11351","rdf:type")="sp:CodedValue"
     153 ;G("node16rk1fgdvx11390","code")="snomed:44054006"
     154 ;G("node16rk1fgdvx11390","dcterms:title")="Diabetes mellitus type 2"
     155 ;G("node16rk1fgdvx11390","rdf:type")="sp:CodedValue"
     156 ;G("node16rk1fgdvx11558","code")="snomed:195967001"
     157 ;G("node16rk1fgdvx11558","dcterms:title")="Asthma"
     158 ;G("node16rk1fgdvx11558","rdf:type")="sp:CodedValue"
     159 ;G("node16rk1fgdvx11578","code")="snomed:254837009"
     160 ;G("node16rk1fgdvx11578","dcterms:title")="Primary malignant neoplasm of female breast"
     161 ;G("node16rk1fgdvx11578","rdf:type")="sp:CodedValue"
     162 ;G("node16rk1fgdvx11687","code")="snomed:8517006"
     163 ;G("node16rk1fgdvx11687","dcterms:title")="History of tobacco use"
     164 ;G("node16rk1fgdvx11687","rdf:type")="sp:CodedValue"
     165 ;G("node16rk1fgdvx11716","code")="snomed:55822004"
     166 ;G("node16rk1fgdvx11716","dcterms:title")="Hyperlipidemia"
     167 ;G("node16rk1fgdvx11716","rdf:type")="sp:CodedValue"
     168 ;G("smart:1577780/problems/69560e4721e1","belongsTo")="smart:1577780"
     169 ;G("smart:1577780/problems/69560e4721e1","problemName")="node16rk1fgdvx11089"
     170 ;G("smart:1577780/problems/69560e4721e1","rdf:type")="sp:Problem"
     171 ;G("smart:1577780/problems/69560e4721e1","startDate")="2005-08-02"
     172 ;G("smart:1577780/problems/06ef10c4e92c","belongsTo")="smart:1577780"
     173 ;G("smart:1577780/problems/06ef10c4e92c","problemName")="node16rk1fgdvx11051"
     174 ;G("smart:1577780/problems/06ef10c4e92c","rdf:type")="sp:Problem"
     175 ;G("smart:1577780/problems/06ef10c4e92c","startDate")="2006-02-20"
     176 ;G("smart:1577780/problems/9894ba9dfe5a","belongsTo")="smart:1577780"
     177 ;G("smart:1577780/problems/9894ba9dfe5a","problemName")="node16rk1fgdvx11578"
     178 ;G("smart:1577780/problems/9894ba9dfe5a","rdf:type")="sp:Problem"
     179 ;G("smart:1577780/problems/9894ba9dfe5a","startDate")="2005-08-22"
     180 ;G("smart:1577780/problems/c109aa7a0675","belongsTo")="smart:1577780"
     181 ;G("smart:1577780/problems/c109aa7a0675","problemName")="node16rk1fgdvx11558"
     182 ;G("smart:1577780/problems/c109aa7a0675","rdf:type")="sp:Problem"
     183 ;G("smart:1577780/problems/c109aa7a0675","startDate")="2005-09-22"
     184 ;G("smart:1577780/problems/1c50100614a2","belongsTo")="smart:1577780"
     185 ;G("smart:1577780/problems/1c50100614a2","problemName")="node16rk1fgdvx11073"
     186 ;G("smart:1577780/problems/1c50100614a2","rdf:type")="sp:Problem"
     187 ;G("smart:1577780/problems/1c50100614a2","startDate")="2007-02-21"
     188 ;G("smart:1577780/problems/083dffb2c4a0","belongsTo")="smart:1577780"
     189 ;G("smart:1577780/problems/083dffb2c4a0","problemName")="node16rk1fgdvx11390"
     190 ;G("smart:1577780/problems/083dffb2c4a0","rdf:type")="sp:Problem"
     191 ;G("smart:1577780/problems/083dffb2c4a0","startDate")="2007-01-07"
     192 ;G("smart:1577780/problems/762b5639a2d1","belongsTo")="smart:1577780"
     193 ;G("smart:1577780/problems/762b5639a2d1","problemName")="node16rk1fgdvx11687"
     194 ;G("smart:1577780/problems/762b5639a2d1","rdf:type")="sp:Problem"
     195 ;G("smart:1577780/problems/762b5639a2d1","startDate")="2006-02-20"
     196 ;G("smart:1577780/problems/9dc9053dd6f4","belongsTo")="smart:1577780"
     197 ;G("smart:1577780/problems/9dc9053dd6f4","problemName")="node16rk1fgdvx11716"
     198 ;G("smart:1577780/problems/9dc9053dd6f4","rdf:type")="sp:Problem"
     199 ;G("smart:1577780/problems/9dc9053dd6f4","startDate")="2008-04-08"
     200 ;G("smart:1577780/problems/e3fe9b7ee552","belongsTo")="smart:1577780"
     201 ;G("smart:1577780/problems/e3fe9b7ee552","problemName")="node16rk1fgdvx10882"
     202 ;G("smart:1577780/problems/e3fe9b7ee552","rdf:type")="sp:Problem"
     203 ;G("smart:1577780/problems/e3fe9b7ee552","startDate")="2005-10-27"
     204 ;G("smart:1577780/problems/9933307e8f95","belongsTo")="smart:1577780"
     205 ;G("smart:1577780/problems/9933307e8f95","problemName")="node16rk1fgdvx11351"
     206 ;G("smart:1577780/problems/9933307e8f95","rdf:type")="sp:Problem"
     207 ;G("smart:1577780/problems/9933307e8f95","startDate")="2005-08-22"
     208 ;G("snomed:188155002","dcterms:identifier")=188155002
     209 ;G("snomed:188155002","dcterms:title")="Primary malignant neoplasm of lower outer quadrant of female breast"
     210 ;G("snomed:188155002","rdf:type")="sp:Code"
     211 ;G("snomed:188155002","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     212 ;G("snomed:195967001","dcterms:identifier")=195967001
     213 ;G("snomed:195967001","dcterms:title")="Asthma"
     214 ;G("snomed:195967001","rdf:type")="sp:Code"
     215 ;G("snomed:195967001","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     216 ;G("snomed:254837009","dcterms:identifier")=254837009
     217 ;G("snomed:254837009","dcterms:title")="Primary malignant neoplasm of female breast"
     218 ;G("snomed:254837009","rdf:type")="sp:Code"
     219 ;G("snomed:254837009","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     220 ;G("snomed:353295004","dcterms:identifier")=353295004
     221 ;G("snomed:353295004","dcterms:title")="Toxic diffuse goiter"
     222 ;G("snomed:353295004","rdf:type")="sp:Code"
     223 ;G("snomed:353295004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     224 ;G("snomed:38341003","dcterms:identifier")=38341003
     225 ;G("snomed:38341003","dcterms:title")="Essential hypertension"
     226 ;G("snomed:38341003","rdf:type")="sp:Code"
     227 ;G("snomed:38341003","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     228 ;G("snomed:40930008","dcterms:identifier")=40930008
     229 ;G("snomed:40930008","dcterms:title")="Hypothyroidism"
     230 ;G("snomed:40930008","rdf:type")="sp:Code"
     231 ;G("snomed:40930008","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     232 ;G("snomed:44054006","dcterms:identifier")=44054006
     233 ;G("snomed:44054006","dcterms:title")="Diabetes mellitus type 2"
     234 ;G("snomed:44054006","rdf:type")="sp:Code"
     235 ;G("snomed:44054006","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     236 ;G("snomed:54302000","dcterms:identifier")=54302000
     237 ;G("snomed:54302000","dcterms:title")="Disorder of breast"
     238 ;G("snomed:54302000","rdf:type")="sp:Code"
     239 ;G("snomed:54302000","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     240 ;G("snomed:55822004","dcterms:identifier")=55822004
     241 ;G("snomed:55822004","dcterms:title")="Hyperlipidemia"
     242 ;G("snomed:55822004","rdf:type")="sp:Code"
     243 ;G("snomed:55822004","system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     244 ;G("snomed:8517006","dcterms:identifier")=8517006
     245 ;G("snomed:8517006","dcterms:title")="History of tobacco use"
     246 ;G("snomed:8517006","rdf:type")="sp:Code"
     247 ;G("snomed:8517006","system")="http://purl.bioontology.org/ontology/SNOMEDCT/"
     248
     249 ;
     250PROB(GRTN,C0SARY) ; GRTN, passed by reference,
     251 ; is the return name of the graph created. "" if none
     252 ; C0SARY is passed in by reference and is the NHIN array of problems
     253 ;
     254 I $O(C0SARY("problem",""))="" D  Q  ;
     255 . I $D(DEBUG) W !,"No Problems"
     256 S GRTN="" ; default to no problems
     257 N C0SGRF
     258 S C0SGRF="vistaSmart:"_ZPATID_"/problems"
     259 I $D(DEBUG) W !,"Processing ",C0SGRF
     260 D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
     261 D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
     262 N FARY S FARY="C0XFARY"
     263 D USEFARY^C0XF2N(FARY)
     264 D VOCINIT^C0XUTIL
     265 ;
     266 D STARTADD^C0XF2N ; initialize to create triples
     267 ;
     268 N ZI S ZI=""
     269 F  S ZI=$O(C0SARY("problem",ZI)) Q:ZI=""  D  ;
     270 . N LRN,ZR ; ZR is the local array for building the new triples
     271 . S LRN=$NA(C0SARY("problem",ZI)) ; base for values in this lab result
     272 . ;
     273 . N PROBID ; unique Id for this problem
     274 . S PROBID=C0SGRF_"/"_$$LKY17^C0XF2N ; use a random number
     275 . ;
     276 . ; i don't like this because the same problems gets a
     277 . ; different ID every time it's reported. Can't trace it back to VistA
     278 . ; I'd rather be using id@value ie "id@value")="118"
     279 . ;
     280 . N SNOMED,ICD S ICD=$G(@LRN@("icd@value"))
     281 . S SNOMED=$$SNOMED(ICD) ; look up the snomed code in the map
     282 . N SNOGRF ; graph for SNOMED code
     283 . I SNOMED="" D  ;
     284 . . S SNOMED=ICD ; if not found, return the ICD code
     285 . . S SNOGRF="icd9:"_SNOMED
     286 . E  S SNOGRF="snomed:"_SNOMED
     287 . N SNOTIT S SNOTIT=$G(@LRN@("name@value"))
     288 . I $D(DEBUG) D  ;
     289 . . W !,"Processing Problem List ",PROBID
     290 . . W !,"problem: ",SNOTIT
     291 . . W !,"code: ",SNOMED
     292 . ;
     293 . ; first do the base result graph
     294 . ;
     295 . S ZR("rdf:type")="sp:Problem"
     296 . S ZR("sp:belongsTo")=C0SGRF ; the subject for this patient's problems
     297 . ; ie /vista/smart/99912345/problems
     298 . ;
     299 . N PROBNAME S PROBNAME=$$ANONS^C0XF2N ; new node for problem name
     300 . S ZR("sp:problemName")=PROBNAME
     301 . ;
     302 . N STARTDT S STARTDT=$$SPDATE^C0SUTIL($G(@LRN@("entered@value")))
     303 . S ZR("sp:startDate")=STARTDT
     304 . ;
     305 . D ADDINN^C0XF2N(C0SGRF,PROBID,.ZR) ; addIfNotNull the triples
     306 . K ZR ; clean up
     307 . ;
     308 . ; create the problemName graph
     309 . ;
     310 . S ZR("rdf:type")="sp:CodedValue"
     311 . ;S ZR("sp:code")="snomed:"_SNOMED
     312 . S ZR("sp:code")=SNOGRF
     313 . S ZR("dcterms:title")=$G(@LRN@("name@value"))
     314 . D ADDINN^C0XF2N(C0SGRF,PROBNAME,.ZR)
     315 . K ZR
     316 . ;
     317 . ; create snomed graph
     318 . ;
     319 . S ZR("rdf:type")="sp:Code"
     320 . S ZR("sp:system")="http://purl.bioontology.org/ontology/SNOMEDCT"
     321 . I SNOGRF["icd9" S ZR("sp:system")="http://purl.bioontology.org/ontology/ICD9"
     322 . S ZR("dcterms:identifier")=SNOMED
     323 . S ZR("dcterms:title")=SNOTIT
     324 . D ADDINN^C0XF2N(C0SGRF,SNOGRF,.ZR)
     325 . K ZR
     326 . ;
     327 D BULKLOAD^C0XF2N(.C0XFDA)
     328 S GRTN=C0SGRF
     329 Q
     330 ;
     331SNOMED(ZICD) ; extrinsic which returns SNOMED code given an ICD9 code
     332 ; requires the mapping table installed in the triplestore
     333 ;
     334 N ZSN,ZARY,ZSUB,ZSUBS
     335 I $E(ZICD,$L(ZICD))="." S ZICD=$P(ZICD,".",1) ; handle trailing dots
     336 D subjects^C0XGET1(.ZSUBS,"cg:ontology#code",ZICD) ; subjects with the ICD9 code
     337 S ZSUB=$O(ZSUBS("")) ; pick the first one
     338 I ZSUB="" Q ""
     339 D objects^C0XGET1(.ZARY,ZSUB,"cg:ontology#toCode")
     340 S ZSN=$O(ZARY(""))
     341 I $D(DEBUG) W !,ZSN," ",$$object^C0XGET1(ZSUB,"rdfs:label")
     342 Q ZSN
     343 ;
  • smart/trunk/p/C0STBL.m

    r1540 r1569  
    1 C0STBL    ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21 EN(BEGDFN,DFNCNT,ZPART) ; START IS A DFN
    22         I '$D(BEGDFN) S BDGDFN=""
    23         I '$D(DFNCNT) S DFNCNT=150
    24         I '$D(ZPART) S ZPART=""
    25         N ZTBL S ZTBL=$NA(^TMP("C0STBL"))
    26         N ZI,ZCNT,ZG
    27         S ZI=BEGDFN
    28         S ZCNT=0
    29         F  S ZI=$O(^DPT(ZI)) Q:(+ZI=0)!(ZCNT>DFNCNT)  D  ;
    30         . S ZCNT=ZCNT+1
    31         . W ZI," "
    32         . K ZG
    33         . D EN^C0SNHIN(.ZG,ZI,ZPART)
    34         . M @ZTBL@(ZI)=ZG
    35         . K G
    36         . ;D EN^C0SMART(.G,ZI,"med")
    37         . ;I $D(G) W !,$$output^C0XGET1("G")
    38         . ;k G
    39         . ;D EN^C0SMART(.G,ZI,"patient")
    40         . ;I $D(G) W !,$$output^C0XGET1("G")
    41         . ;K G
    42         . ;D EN^C0SMART(.G,ZI,"lab")
    43         . ;I $D(G) W !,$$output^C0XGET1("G")
    44         . ;K G
    45         . D EN^C0SMART(.G,ZI,"problem")
    46         . ;I $D(G) W !,$$output^C0XGET1("G")
    47         Q
    48         ;
    49 LOADHACK        ;
    50         N ZI
    51         F ZI=2:1:374 D  ;
    52         . D IMPORT^C0XF2N("hack"_ZI_".xml","/home/vista/hack/")
    53         Q
    54         ;
     1C0STBL   ; GPL - Smart Container CREATE A TABLE OF NHINV VALUES;2/22/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21EN(BEGDFN,DFNCNT,ZPART) ; START IS A DFN
     22 I '$D(BEGDFN) S BDGDFN=""
     23 I '$D(DFNCNT) S DFNCNT=150
     24 I '$D(ZPART) S ZPART=""
     25 N ZTBL S ZTBL=$NA(^TMP("C0STBL"))
     26 N ZI,ZCNT,ZG
     27 S ZI=$O(^DPT(BEGDFN),-1)
     28 S ZCNT=1
     29 F  S ZI=$O(^DPT(ZI)) Q:((+ZI=0)!(ZCNT>DFNCNT))  D  ;
     30 . S ZCNT=ZCNT+1
     31 . W ZI," "
     32 . K ZG
     33 . D EN^C0SNHIN(.ZG,ZI,ZPART)
     34 . M @ZTBL@(ZI)=ZG
     35 . K G
     36 . N GDIR S GDIR="/home/vista/p/"
     37 . D EN^C0SMART(.G,ZI,"med")
     38 . I $D(G) W !,$$output^C0XGET1("G",ZI_"-med.rdf",GDIR)
     39 . k G
     40 . D EN^C0SMART(.G,ZI,"patient")
     41 . I $D(G) W !,$$output^C0XGET1("G",ZI_"-patient.rdf",GDIR)
     42 . K G
     43 . D EN^C0SMART(.G,ZI,"lab")
     44 . I $D(G) W !,$$output^C0XGET1("G",ZI_"-lab.rdf",GDIR)
     45 . K G
     46 . D EN^C0SMART(.G,ZI,"problem")
     47 . I $D(G) W !,$$output^C0XGET1("G",ZI_"-problem.rdf",GDIR)
     48 Q
     49 ;
     50LOADHACK ;
     51 N ZI
     52 F ZI=2:1:374 D  ;
     53 . D IMPORT^C0XF2N("hack"_ZI_".xml","/home/vista/hack/")
     54 Q
     55 ;
     56LABCNT ; COUNT LAB TESTS AND LOINC CODES
     57 K LABCNT,GLOINC,PATCNT
     58 S (LABCNT,GLOINC,PATCNT)=0
     59 N ZI S ZI=""
     60 N GN S GN=$NA(^TMP("C0STBL"))
     61 F  S ZI=$O(@GN@(ZI)) Q:ZI=""  D  ;
     62 . S PATCNT=PATCNT+1
     63 . I '$D(@GN@(ZI,"lab")) Q  ;
     64 . N ZJ S ZJ=""
     65 . F  S ZJ=$O(@GN@(ZI,"lab",ZJ)) Q:ZJ=""  D  ;
     66 . . S LABCNT=LABCNT+1
     67 . . S X=$G(@GN@(ZI,"lab",ZJ,"loinc@value"))
     68 . . I X'="" S GLOINC=GLOINC+1
     69 W !,"Total number of patients: ",PATCNT
     70 W !,"Total number of lab results: ",LABCNT
     71 W !,"Total number of lab results with loinc codes: ",GLOINC
     72 W !,"Percentage of lab tests with loinc codes: ",$P((GLOINC/LABCNT)*100,".")_"%"
     73 Q
     74 ;
     75PROBCNT ; COUNT PROBLEMS AND SNOMED CODES
     76 K PROBCNT,GSNO,PATCNT
     77 S (PROBCNT,GSNO,PATCNT)=0
     78 N ZI S ZI=""
     79 N GN S GN=$NA(^TMP("C0STBL"))
     80 F  S ZI=$O(@GN@(ZI)) Q:ZI=""  D  ;
     81 . S PATCNT=PATCNT+1
     82 . I '$D(@GN@(ZI,"problem")) Q  ;
     83 . N ZJ S ZJ=""
     84 . F  S ZJ=$O(@GN@(ZI,"problem",ZJ)) Q:ZJ=""  D  ;
     85 . . S PROBCNT=PROBCNT+1
     86 . . S X=$G(@GN@(ZI,"problem",ZJ,"icd@value"))
     87 . . S Y=$$SNOMED^C0SPROB2(X)
     88 . . I Y'="" S GSNO=GSNO+1
     89 W !,"Total number of patients: ",PATCNT
     90 W !,"Total number of problems: ",PROBCNT
     91 W !,"Total number of problems with snomed codes: ",GSNO
     92 W !,"Percentage of problems with SNOMED codes: ",$P((GSNO/PROBCNT)*100,".")_"%"
     93 Q
     94 ;
     95MEDCNT ; COUNT INPATIENT VS OUTPATIENT MEDICATIONS
     96 K MEDCNT,OMED,PATCNT,DOSE,UNITS,FORM,SCHED,ROUTE
     97 S (MEDCNT,OMED,GSNO,PATCNT)=0
     98 N ZI S ZI=""
     99 N GN S GN=$NA(^TMP("C0STBL"))
     100 F  S ZI=$O(@GN@(ZI)) Q:ZI=""  D  ;
     101 . S PATCNT=PATCNT+1
     102 . I '$D(@GN@(ZI,"med")) Q  ;
     103 . N ZJ S ZJ=""
     104 . F  S ZJ=$O(@GN@(ZI,"med",ZJ)) Q:ZJ=""  D  ;
     105 . . S MEDCNT=MEDCNT+1
     106 . . I $G(@GN@(ZI,"med",ZJ,"vaStatus@value"))="EXPIRED" D  Q  ;
     107 . . . I $D(DEBUG) W !,"Expired Mediation, Skipping"
     108 . . I $G(@GN@(ZI,"med",ZJ,"vaType@value"))="I" D  Q  ;
     109 . . . I $D(DEBUG) W !,"Inpatient Med, skipping"
     110 . . I $G(@GN@(ZI,"med",ZI,"vaType@value"))="V" D  Q  ;
     111 . . . I $D(DEBUG) W !,"IV Inpatient Med, skipping"
     112 . . S OMED=OMED+1
     113 . . S X=$G(@GN@(ZI,"med",ZJ,"form@value"))
     114 . . S FORM(X)=$G(FORM(X))+1
     115 . . S X=$G(@GN@(ZI,"med",ZJ,"doses.dose@dose"))
     116 . . I X="" S X="UNKNOWN"
     117 . . S DOSE(X)=$G(DOSE(X))+1
     118 . . S X=$G(@GN@(ZI,"med",ZJ,"doses.dose@units"))
     119 . . I X="" S X="UNKNOWN"
     120 . . S UNITS(X)=$G(UNITS(X))+1
     121 . . S X=$G(@GN@(ZI,"med",ZJ,"doses.dose@schedule"))
     122 . . I X="" S X="UNKNOWN"
     123 . . S SCHED(X)=$G(SCHED(X))+1
     124 . . S X=$G(@GN@(ZI,"med",ZJ,"doses.dosc@route"))
     125 . . I X="" S X="UNKNOWN"
     126 . . S ROUTE(X)=$G(ROUTE(X))+1
     127 W !,"Total number of patients: ",PATCNT
     128 W !,"Total number of medications: ",MEDCNT
     129 W !,"Total number of outpatient medications: ",OMED
     130 W !,"Percentage of outpatient medications: ",$P((OMED/MEDCNT)*100,".")_"%",!
     131 ZWR FORM
     132 ZWR DOSE
     133 ZWR UNITS
     134 ZWR SCHED
     135 ZWR ROUTE
     136 Q
     137 ;
  • smart/trunk/p/C0SUTIL.m

    r1540 r1569  
    1 C0SUTIL   ; GPL - Smart Processing Utilities ;2/22/12  17:05
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         Q
    21         ;
    22 SPDATE(ZDATE)   ; extrinsic which returns the Smart date format yyyy-mm-dd
    23         ; ZDATE is a fileman format date
    24         N TMPDT
    25         S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
    26         S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
    27         I TMPDT="" S TMPDT="UNKNOWN"
    28         N Z2,Z3
    29         S Z2=$P(TMPDT,"-",2)
    30         S Z3=$P(TMPDT,"-",3)
    31         I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
    32         I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
    33         Q TMPDT
    34         ;
     1C0SUTIL   ; GPL - Smart Processing Utilities ;2/22/12  17:05
     2 ;;0.1;C0S;nopatch;noreleasedate;Build 2
     3 ;Copyright 2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 Q
     21 ;
     22SPDATE(ZDATE) ; extrinsic which returns the Smart date format yyyy-mm-dd
     23 ; ZDATE is a fileman format date
     24 N TMPDT
     25 S TMPDT=$$FMTE^XLFDT(ZDATE,"7D") ; ordered date
     26 S TMPDT=$TR(TMPDT,"/","-") ; change slashes to hyphens
     27 I TMPDT="" S TMPDT="UNKNOWN"
     28 N Z2,Z3
     29 S Z2=$P(TMPDT,"-",2)
     30 S Z3=$P(TMPDT,"-",3)
     31 I $L(Z2)=1 S $P(TMPDT,"-",2)="0"_Z2
     32 I $L(Z3)=1 S $P(TMPDT,"-",3)="0"_Z3
     33 Q TMPDT
     34 ;
  • smart/trunk/p/C0SXPATH.m

    r1540 r1569  
    1 C0SXPATH          ; CCDCCR/GPL - XPATH XML manipulation utilities; 6/1/08 ; 9/26/12 10:45am
    2         ;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 2
    3         ;Copyright 2008-2012 George Lilly.  Licensed under the terms of the GNU
    4         ;General Public License See attached copy of the License.
    5         ;
    6         ;This program is free software; you can redistribute it and/or modify
    7         ;it under the terms of the GNU General Public License as published by
    8         ;the Free Software Foundation; either version 2 of the License, or
    9         ;(at your option) any later version.
    10         ;
    11         ;This program is distributed in the hope that it will be useful,
    12         ;but WITHOUT ANY WARRANTY; without even the implied warranty of
    13         ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    14         ;GNU General Public License for more details.
    15         ;
    16         ;You should have received a copy of the GNU General Public License along
    17         ;with this program; if not, write to the Free Software Foundation, Inc.,
    18         ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
    19         ;
    20         W "This is an XML XPATH utility library",!
    21         W !
    22         Q
    23         ;
    24 OUTPUT(OUTARY,OUTNAME,OUTDIR)     ; WRITE AN ARRAY TO A FILE
    25         ;
    26         N Y
    27         S Y=$$GTF^%ZISH(OUTARY,$QL(OUTARY),OUTDIR,OUTNAME)
    28         I Y Q 1_U_"WROTE FILE: "_OUTNAME_" TO "_OUTDIR
    29         I 'Y Q 0_U_"ERROR WRITING FILE"_OUTNAME_" TO "_OUTDIR
    30         Q
    31         ;
    32 PUSH(STK,VAL)     ; pushs VAL onto STK and updates STK(0)
    33         ;  VAL IS A STRING AND STK IS PASSED BY NAME
    34         ;
    35         I '$D(@STK@(0)) S @STK@(0)=0 ; IF THE ARRAY IS EMPTY, INITIALIZE
    36         S @STK@(0)=@STK@(0)+1 ; INCREMENT ARRAY DEPTH
    37         S @STK@(@STK@(0))=VAL ; PUT VAL A THE END OF THE ARRAY
    38         Q
    39         ;
    40 POP(STK,VAL)       ; POPS THE LAST VALUE OFF THE STK AND RETURNS IT IN VAL
    41         ; VAL AND STK ARE PASSED BY REFERENCE
    42         ;
    43         I @STK@(0)<1 D  ; IF ARRAY IS EMPTY
    44         . S VAL=""
    45         . S @STK@(0)=0
    46         I @STK@(0)>0  D  ;
    47         . S VAL=@STK@(@STK@(0))
    48         . K @STK@(@STK@(0))
    49         . S @STK@(0)=@STK@(0)-1 ; NEW DEPTH OF THE ARRAY
    50         Q
    51         ;
    52 PUSHA(ADEST,ASRC)       ; PUSH ASRC ONTO ADEST, BOTH PASSED BY NAME
    53         ;
    54         N ZGI
    55         F ZGI=1:1:@ASRC@(0) D  ; FOR ALL OF THE SOURCE ARRAY
    56         . D PUSH(ADEST,@ASRC@(ZGI)) ; PUSH ONE ELEMENT
    57         Q
    58         ;
    59 MKMDX(STK,RTN,INREDUX)  ; MAKES A MUMPS INDEX FROM THE ARRAY STK
    60         ; RTN IS SET TO //FIRST/SECOND/THIRD FOR THREE ARRAY ELEMENTS
    61         ; REDUX IS A STRING TO REMOVE FROM THE RESULT
    62         S RTN=""
    63         N I
    64         ; W "STK= ",STK,!
    65         I @STK@(0)>0  D  ; IF THE ARRAY IS NOT EMPTY
    66         . S RTN="//"_@STK@(1) ; FIRST ELEMENT NEEDS NO SEMICOLON
    67         . I @STK@(0)>1  D  ; SUBSEQUENT ELEMENTS NEED A SEMICOLON
    68         . . F I=2:1:@STK@(0) S RTN=RTN_"/"_@STK@(I)
    69         I $G(INREDUX)'="" S RTN=$P(RTN,INREDUX,1)_$P(RTN,INREDUX,2)
    70         Q
    71         ;
    72 XNAME(ISTR)         ; FUNCTION TO EXTRACT A NAME FROM AN XML FRAG
    73         ;  </NAME> AND <NAME ID=XNAME> WILL RETURN NAME
    74         ; ISTR IS PASSED BY VALUE
    75         N CUR,TMP
    76         I ISTR?.E1"<".E  D  ; STRIP OFF LEFT BRACKET
    77         . S TMP=$P(ISTR,"<",2)
    78         I TMP?1"/".E  D  ; ALSO STRIP OFF SLASH IF PRESENT IE </NAME>
    79         . S TMP=$P(TMP,"/",2)
    80         S CUR=$P(TMP,">",1) ; EXTRACT THE NAME
    81         ; W "CUR= ",CUR,!
    82         I CUR?.1"_"1.A1" ".E  D  ; CONTAINS A BLANK IE NAME ID=TEST>
    83         . S CUR=$P(CUR," ",1) ; STRIP OUT BLANK AND AFTER
    84         ; W "CUR2= ",CUR,!
    85         Q CUR
    86         ;
    87 XVAL(ISTR)      ; EXTRACTS THE VALUE FROM A FRAGMENT OF XML
    88         ; <NAME>VALUE</NAME> WILL RETURN VALUE
    89         N G
    90         S G=$P(ISTR,">",2) ;STRIP OFF <NAME>
    91         Q $P(G,"<",1) ; STRIP OFF </NAME> LEAVING VALUE
    92         ;
    93 VDX2VDV(OUTVDV,INVDX)   ; CONVERT AN VDX ARRAY TO VDV
    94         ; VDX: @INVDX@(XPATH)=VALUE
    95         ; VDV: @OUTVDV@(X1X2X3X4)=VALUE
    96         ; THE VDV DATANAMES MIGHT BE MORE CONVENIENT FOR USE IN CODE
    97         ; AN INDEX IS PROVIDED TO GO BACK TO VDX FOR CONVERSIONS
    98         ; @VDV@("XPATH",X1X2X3X4)="XPATH"
    99         N ZA,ZI,ZW
    100         S ZI=""
    101         F  S ZI=$O(@INVDX@(ZI)) Q:ZI=""  D  ;
    102         . S ZW=$TR(ZI,"/","") ; ELIMINATE ALL SLASHES - CAMEL CASE VARIABLE NAME
    103         . W ZW,!
    104         . S @OUTVDV@(ZW)=@INVDX@(ZI)
    105         . S @OUTVDV@("XPATH",ZW)=ZI
    106         Q
    107         ;
    108 VDX2XPG(OUTXPG,INVDX)   ; CONVERT AN VDX ARRAY TO XPG
    109         ; VDX: @VDX@(XPATH)=VALUE
    110         ; XPG: @(VDX(X1,X2,X3,X4))@=VALUE
    111         ; THIS IS A STEP TOWARD GENERATING XML FROM A VDX
    112         N ZA,ZI,ZW
    113         S ZI=""
    114         F  S ZI=$O(@INVDX@(ZI)) Q:ZI=""  D  ;
    115         . S ZW=$E(ZI,3,$L(ZI)) ; STRIP OFF INITIAL //
    116         . S ZW2=$P(ZW,"/",1)
    117         . F ZK=1:1:$L(ZW,"/") D PUSH("ZA",$P(ZW,"/",ZK))
    118         . ;ZWR ZA
    119         . S ZW2=ZA(1)
    120         . F ZK=2:1:ZA(0) D  ;
    121         . . S ZW2=ZW2_""","""_ZA(ZK)
    122         . K ZA
    123         . S ZW2=""""_ZW2_""""
    124         . W ZW2,!
    125         . S ZN=OUTXPG_"("_ZW2_")"
    126         . S @ZN=@INVDX@(ZI)
    127         Q
    128         ;
    129 XML2XPG(OUTXPG,INXML)   ; CONVERT AN XML ARRAY, PASSED BY NAME TO AN XPG ARRAY
    130         ; XPG MEANS XPATH GLOBAL AND HAS THE FORM @OUTXPG@("X1","X2","X3")=VALUE
    131         ;
    132         ;N G1
    133         D INDEX(INXML,"G1",1) ; PRODUCES A VDX ARRAY IN G1, NO INDEX IS PRODUCED
    134         D VDX2XPG(OUTXPG,"G1") ; CONVERTS THE VDX ARRAY TO XPG FORM
    135         Q
    136         ;
    137 DO     
    138         D XPG2XML("^GPL2B","^GPL2A")
    139         Q
    140         ;
    141 T1      ; TEST OUT THESE ROUTINES
    142         D XML2XPG("G2","^GPL")
    143         D XPG2XML("G3","G2")
    144         K ^GPLOUT
    145         M ^GPLOUT=G3
    146         W $$OUTPUT^C0CXPATH("^GPLOUT(1)","GPLTEST.xml","/home/vademo2/EHR/p")
    147         Q
    148         ;
    149 XPG2XML(OUTXML,INXPG)   ;
    150         N C0CN,FWD,ZA,G,GA,ZQ
    151         S ZQ=0 ; QUIT FLAG
    152         F  Q:ZQ=1  D  ; LOOP THROUGH EVERYTHING
    153         . I '$D(C0CN) D  ; FIRST TIME THROUGH
    154         . . K @OUTXML ; MAKE SURE OUTPUT ARRAY IS CLEAR
    155         . . S FWD=1 ; START OUT GOING FORWARD THROUGH SUBSCRIPTS
    156         . . S G=$Q(@INXPG) ; THIS ONE
    157         . . S GN=$Q(@G) ; NEXT ONE
    158         . . S C0CN=1 ; SUBSCRIPT COUNT
    159         . . S ZQ=0 ; QUIT FLAG
    160         . . D ZXO("?xml version=""1.0"" encoding=""UTF-8""?") ;MAKE IT REAL XML
    161         . . I $QS(G,1)="ContinuityOfCareRecord" D  ;
    162         . . . D ZXO("?xml-stylesheet type=""text/xsl"" href=""ccr.xsl""?") ; HACK TO MAKE THE CCR STYLESHEET WORK
    163         . I FWD D  ; GOING FORWARDS
    164         . . I C0CN<$QL(G) D  ; NOT A DATA NODE
    165         . . . S ZA=$QS(G,C0CN) ; PULL OUT THE SUBSCRIPT
    166         . . . D ZXO(ZA) ; AND OPEN AN XML ELEMENT
    167         . . . I @OUTXML@(@OUTXML@(0))="<ContinuityOfCareRecord>" D  ;
    168         . . . . S @OUTXML@(@OUTXML@(0))="<ContinuityOfCareRecord xmlns=""urn:astm-org:CCR"">"
    169         . . . S C0CN=C0CN+1 ; MOVE TO THE NEXT ONE
    170         . . E  D  ; AT THE DATA NODE
    171         . . . S ZA=$QS(G,C0CN) ; PULL OUT THE SUBSCRIPT
    172         . . . D ZXVAL(ZA,@G) ; OUTPUT <X>VAL</X> FOR DATA NODE
    173         . . . S FWD=0 ; GO BACKWARDS
    174         . I 'FWD D  ;GOING BACKWARDS
    175         . . S GN=$Q(@G) ;NEXT XPATH
    176         . . ;W "NEXT!",GN,!
    177         . . S C0CN=C0CN-1 ; PREVIOUS SUBSCRIPT
    178         . . I GN'="" D  ;
    179         . . . I $QS(G,C0CN)'=$QS(GN,C0CN) D  ; NEED TO CLOSE OFF ELEMENT
    180         . . . . D ZXC($QS(G,C0CN)) ;
    181         . . . E  I GN'="" D  ; MORE ELEMENTS AT THIS LEVEL
    182         . . . . S G=$Q(@G) ; ADVANCE TO NEW XPATH
    183         . . . . S C0CN=C0CN+1 ; GET READY TO PROCESS NEXT SUBSCRIPT
    184         . . . . S FWD=1 ; GOING FORWARD NOW
    185         . I (GN="")&(C0CN=1) D  Q  ; WHEN WE ARE ALL DONE
    186         . . D ZXC($QS(G,C0CN)) ; LAST ONE
    187         . . S ZQ=1 ; QUIT NOW
    188         Q
    189         ;
    190 ZXO(WHAT)       
    191         D PUSH("GA",WHAT)
    192         D PUSH(OUTXML,"<"_WHAT_">")
    193         Q
    194         ;
    195 ZXC(WHAT)       
    196         D POP("GA",.TMP)
    197         D PUSH(OUTXML,"</"_WHAT_">")
    198         Q
    199         ;
    200 ZXVAL(WHAT,VAL) 
    201         D PUSH(OUTXML,"<"_WHAT_">"_VAL_"</"_WHAT_">")
    202         Q
    203         ;
    204 INDEX(IZXML,VDX,NOINX,TEMPLATE,REDUX)   ; parse XML in IZXML and produce
    205         ; an XPATH index; REDUX is a string to be removed from each xpath
    206         ; GPL 7/14/09 OPTIONALLY GENERATE AN XML TEMPLATE IF PASSED BY NAME
    207         ; TEMPLATE IS IDENTICAL TO THE PARSED XML LINE BY LINE
    208         ; EXCEPT THAT DATA VALUES ARE REPLACED WITH @@XPATH@@ FOR THE XPATH OF THE TAG
    209         ; GPL 5/24/09 AND OPTIONALLY PRODUCE THE VDX ARRAY PASSED BY NAME
    210         ; @VDX@("XPATH")=VALUE
    211         ; ex. @IZXML@("XPATH")=FIRSTLINE^LASTLINE
    212         ; WHERE FIRSTLINE AND LASTLINE ARE THE BEGINNING AND ENDING OF THE
    213         ; XML SECTION
    214         ; IZXML IS PASSED BY NAME
    215         ; IF NOINX IS SET TO 1, NO INDEX WILL BE GENERATED, BUT THE VDX WILL BE
    216         N I,LINE,FIRST,LAST,CUR,TMP,MDX,FOUND,CURVAL,DVDX,LCNT
    217         N C0CSTK ; LEAVE OUT FOR DEBUGGING
    218         I '$D(REDUX) S REDUX=""
    219         I '$D(NOINX) S NOINX=0 ; IF NOT PASSED, GENERATE AN INDEX
    220         N ZXML
    221         I NOINX S ZXML=$NA(^TMP("C0CINDEX",$J)) ; TEMP PLACE FOR INDEX TO DISCARD
    222         E  S ZXML=IZXML ; PLACE FOR INDEX TO KEEP
    223         I '$D(@IZXML@(0)) D  ; IF COUNT NOT IN NODE 0 COUNT THEM
    224         . S I="",LCNT=0
    225         . F  S I=$O(@IZXML@(I)) Q:I=""  S LCNT=LCNT+1
    226         E  S LCNT=@IZXML@(0) ; LINE COUNT PASSED IN ARRAY
    227         I LCNT=0  D  Q  ; NO XML PASSED
    228         . W "ERROR IN XML FILE",!
    229         S DVDX=0 ; DEFAULT DO NOT PRODUCE VDX INDEX
    230         I $D(VDX) S DVDX=1 ; IF NAME PASSED, DO VDX
    231         S C0CSTK(0)=0 ; INITIALIZE STACK
    232         K LKASD ; KILL LOOKASIDE ARRAY
    233         D MKLASD(.LKASD,IZXML) ;MAKE LOOK ASIDE BUFFER FOR MULTIPLES
    234         F I=1:1:LCNT  D  ; PROCESS THE ENTIRE ARRAY
    235         . S LINE=@IZXML@(I)
    236         . I $D(TEMPLATE) D  ;IF TEMPLATE IS REQUESTED
    237         . . S @TEMPLATE@(I)=$$CLEAN(LINE)
    238         . ;W LINE,!
    239         . S FOUND=0  ; INTIALIZED FOUND FLAG
    240         . I LINE?.E1"<!".E S FOUND=1 ; SKIP OVER COMMENTS
    241         . I FOUND'=1  D
    242         . . I (LINE?.E1"<"1.E1"</".E)!(LINE?.E1"<"1.E1"/>".E)  D
    243         . . . ; THIS IS THE CASE THERE SECTION BEGINS AND ENDS
    244         . . . ; ON THE SAME LINE
    245         . . . ; W "FOUND ",LINE,!
    246         . . . S FOUND=1  ; SET FOUND FLAG
    247         . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
    248         . . . S CUR=CUR_$G(LKASD(CUR,I)) ; HANDLE MULTIPLES
    249         . . . D PUSH("C0CSTK",CUR) ; ADD TO THE STACK
    250         . . . D MKMDX("C0CSTK",.MDX,REDUX) ; GENERATE THE M INDEX
    251         . . . ; W "MDX=",MDX,!
    252         . . . I $D(@ZXML@(MDX))  D  ; IN THE INDEX, IS A MULTIPLE
    253         . . . . ;I '$D(ZDUP(MDX)) S ZDUP(MDX)=2
    254         . . . . ;E  S ZDUP(MDX)=ZDUP(MDX)+1
    255         . . . . ;W "DUP:",MDX,!
    256         . . . . ;I '$D(CURVAL) S CURVAL=""
    257         . . . . ;I DVDX S @VDX@(MDX_"["_ZDUP(MDX)_"]")=CURVAL
    258         . . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
    259         . . . I '$D(@ZXML@(MDX))  D  ; NOT IN THE INDEX, NOT A MULTIPLE
    260         . . . . S @ZXML@(MDX)=I_"^"_I  ; ADD INDEX ENTRY-FIRST AND LAST
    261         . . . . S CURVAL=$$XVAL(LINE) ; VALUE
    262         . . . . S $P(@ZXML@(MDX),"^",3)=CURVAL ; THIRD PIECE
    263         . . . . I DVDX S @VDX@(MDX)=CURVAL ; FILL IN VDX ARRAY IF REQUESTED
    264         . . . . I $D(TEMPLATE) D  ; IF TEMPLATE IS REQUESTED
    265         . . . . . S LINE=$$CLEAN(LINE) ; CLEAN OUT CONTROL CHARACTERS
    266         . . . . . S @TEMPLATE@(I)=$P(LINE,">",1)_">@@"_MDX_"@@</"_$P(LINE,"</",2)
    267         . . . D POP("C0CSTK",.TMP) ; REMOVE FROM STACK
    268         . I FOUND'=1  D  ; THE LINE DOESN'T CONTAIN THE START AND END
    269         . . I LINE?.E1"</"1.E  D  ; LINE CONTAINS END OF A SECTION
    270         . . . ; W "FOUND ",LINE,!
    271         . . . S FOUND=1  ; SET FOUND FLAG
    272         . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
    273         . . . D MKMDX("C0CSTK",.MDX) ; GENERATE THE M INDEX
    274         . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
    275         . . . D POP("C0CSTK",.TMP) ; REMOVE FROM STACK
    276         . . . S TMP=$P(TMP,"[",1) ; REMOVE [X] FROM MULTIPLE
    277         . . . I TMP'=CUR  D  ; MALFORMED XML, END MUST MATCH START
    278         . . . . W "MALFORMED XML ",CUR,"LINE "_I_LINE,!
    279         . . . . D PARY("C0CSTK") ; PRINT OUT THE STACK FOR DEBUGING
    280         . . . . Q
    281         . I FOUND'=1  D  ; THE LINE MIGHT CONTAIN A SECTION BEGINNING
    282         . . I (LINE?.E1"<"1.E)&(LINE'["?>")  D  ; BEGINNING OF A SECTION
    283         . . . ; W "FOUND ",LINE,!
    284         . . . S FOUND=1  ; SET FOUND FLAG
    285         . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
    286         . . . S CUR=CUR_$G(LKASD(CUR,I)) ; HANDLE MULTIPLES
    287         . . . D PUSH("C0CSTK",CUR) ; ADD TO THE STACK
    288         . . . D MKMDX("C0CSTK",.MDX) ; GENERATE THE M INDEX
    289         . . . ; W "MDX=",MDX,!
    290         . . . I $D(@ZXML@(MDX))  D  ; IN THE INDEX, IS A MULTIPLE
    291         . . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
    292         . . . . ;B
    293         . . . I '$D(@ZXML@(MDX))  D  ; NOT IN THE INDEX, NOT A MULTIPLE
    294         . . . . S @ZXML@(MDX)=I_"^" ; INSERT INTO THE INDEX
    295         S @ZXML@("INDEXED")=""
    296         S @ZXML@("//")="1^"_LCNT ; ROOT XPATH
    297         I NOINX K @ZXML ; DELETE UNWANTED INDEX
    298         Q
    299         ;
    300 MKLASD(OUTBUF,INARY)    ; CREATE A LOOKASIDE BUFFER FOR MULTILPLES
    301         ;
    302         N ZI,ZN,ZA,ZLINE,ZLINE2,CUR,CUR2
    303         F ZI=1:1:LCNT-1  D  ; PROCESS THE ENTIRE ARRAY
    304         . S ZLINE=@IZXML@(ZI)
    305         . I ZI<LCNT S ZLINE2=@IZXML@(ZI+1)
    306         . I ZLINE?.E1"</"1.E  D  ; NEXT LINE CONTAINS END OF A SECTION
    307         . . S CUR=$$XNAME(ZLINE) ; EXTRACT THE NAME
    308         . . I (ZLINE2?.E1"<"1.E)&(ZLINE'["?>")  D  ; BEGINNING OF A SECTION
    309         . . . S CUR2=$$XNAME(ZLINE2) ; EXTRACT THE NAME
    310         . . . I CUR=CUR2 D  ; IF THIS IS A MULTIPLE
    311         . . . . S OUTBUF(CUR,ZI+1)=""
    312         ;ZWR OUTBUF
    313         S ZI=""
    314         F  S ZI=$O(OUTBUF(ZI)) Q:ZI=""  D  ; FOR EACH KIND OF MULTIPLE
    315         . S ZN=$O(OUTBUF(ZI,"")) ; LINE NUMBER OF SECOND MULTIPLE
    316         . F  S ZN=$O(@IZXML@(ZN),-1) Q:ZN=""  I $E($P(@IZXML@(ZN),"<"_ZI,2),1,1)=">" Q  ;
    317         . S OUTBUF(ZI,ZN)=""
    318         S ZA=1,ZI="",ZN=""
    319         F  S ZI=$O(OUTBUF(ZI)) Q:ZI=""  D  ; ADDING THE COUNT FOR THE MULIPLES [x]
    320         . S ZN="",ZA=1
    321         . F  S ZN=$O(OUTBUF(ZI,ZN)) Q:ZN=""  D  ;
    322         . . S OUTBUF(ZI,ZN)="["_ZA_"]"
    323         . . S ZA=ZA+1
    324         Q
    325         ;
    326 CLEAN(STR,TR)   ; extrinsic function; returns string
    327         ;; Removes all non printable characters from a string.
    328         ;; STR by Value
    329         ;; TR IS OPTIONAL TO IMPROVE PERFORMANCE
    330         N TR,I
    331         I '$D(TR) D  ;
    332         . F I=0:1:31 S TR=$G(TR)_$C(I)
    333         . S TR=TR_$C(127)
    334         QUIT $TR(STR,TR)
    335         ;
    336 QUERY(IARY,XPATH,OARY)  ; RETURNS THE XML ARRAY MATCHING THE XPATH EXPRESSION
    337         ; XPATH IS OF THE FORM "//FIRST/SECOND/THIRD"
    338         ; IARY AND OARY ARE PASSED BY NAME
    339         I '$D(@IARY@("INDEXED"))  D  ; INDEX IS NOT PRESENT IN IARY
    340         . D INDEX(IARY) ; GENERATE AN INDEX FOR THE XML
    341         N FIRST,LAST ; FIRST AND LAST LINES OF ARRAY TO RETURN
    342         N TMP,I,J,QXPATH
    343         S FIRST=1
    344         I '$D(@IARY@(0)) D  ; LINE COUNT NOT IN ZERO NODE
    345         . S @IARY@(0)=$O(@IARY@("//"),-1) ; THIS SHOULD USUALLY WORK
    346         S LAST=@IARY@(0) ; FIRST AND LAST DEFAULT TO ROOT
    347         I XPATH'="//" D  ; NOT A ROOT QUERY
    348         . S TMP=@IARY@(XPATH) ; LOOK UP LINE VALUES
    349         . S FIRST=$P(TMP,"^",1)
    350         . S LAST=$P(TMP,"^",2)
    351         K @OARY
    352         S @OARY@(0)=+LAST-FIRST+1
    353         S J=1
    354         FOR I=FIRST:1:LAST  D
    355         . S @OARY@(J)=@IARY@(I) ; COPY THE LINE TO OARY
    356         . S J=J+1
    357         ; ZWR OARY
    358         Q
    359         ;
    360 XF(IDX,XPATH)     ; EXTRINSIC TO RETURN THE STARTING LINE FROM AN XPATH
    361         ; INDEX WITH TWO PIECES START^FINISH
    362         ; IDX IS PASSED BY NAME
    363         Q $P(@IDX@(XPATH),"^",1)
    364         ;
    365 XL(IDX,XPATH)     ; EXTRINSIC TO RETURN THE LAST LINE FROM AN XPATH
    366         ; INDEX WITH TWO PIECES START^FINISH
    367         ; IDX IS PASSED BY NAME
    368         Q $P(@IDX@(XPATH),"^",2)
    369         ;
    370 START(ISTR)         ; EXTRINSIC TO RETURN THE STARTING LINE FROM AN INDEX
    371         ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
    372         ; COMPANION TO FINISH ; IDX IS PASSED BY NAME
    373         Q $P(ISTR,";",2)
    374         ;
    375 FINISH(ISTR)       ; EXTRINSIC TO RETURN THE LAST LINE FROM AN INDEX
    376         ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
    377         Q $P(ISTR,";",3)
    378         ;
    379 ARRAY(ISTR)         ; EXTRINSIC TO RETURN THE ARRAY REFERENCE FROM AN INDEX
    380         ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
    381         Q $P(ISTR,";",1)
    382         ;
    383 BUILD(BLIST,BDEST)           ; A COPY MACHINE THAT TAKE INSTRUCTIONS IN ARRAY BLIST
    384         ; WHICH HAVE ARRAY;START;FINISH AND COPIES THEM TO DEST
    385         ; DEST IS CLEARED TO START
    386         ; USES PUSH TO DO THE COPY
    387         N I
    388         K @BDEST
    389         F I=1:1:@BLIST@(0) D  ; FOR EACH INSTRUCTION IN BLIST
    390         . N J,ATMP
    391         . S ATMP=$$ARRAY(@BLIST@(I))
    392         . I $G(DEBUG) W "ATMP=",ATMP,!
    393         . I $G(DEBUG) W @BLIST@(I),!
    394         . F J=$$START(@BLIST@(I)):1:$$FINISH(@BLIST@(I)) D  ;
    395         . . ; FOR EACH LINE IN THIS INSTR
    396         . . I $G(DEBUG) W "BDEST= ",BDEST,!
    397         . . I $G(DEBUG) W "ATMP= ",@ATMP@(J),!
    398         . . D PUSH(BDEST,@ATMP@(J))
    399         Q
    400         ;
    401 QUEUE(BLST,ARRAY,FIRST,LAST)       ; ADD AN ENTRY TO A BLIST
    402         ;
    403         I $G(DEBUG) W "QUEUEING ",BLST,!
    404         D PUSH(BLST,ARRAY_";"_FIRST_";"_LAST)
    405         Q
    406         ;
    407 CP(CPSRC,CPDEST)               ; COPIES CPSRC TO CPDEST BOTH PASSED BY NAME
    408         ; KILLS CPDEST FIRST
    409         N CPINSTR
    410         I $G(DEBUG) W "MADE IT TO COPY",CPSRC,CPDEST,!
    411         I @CPSRC@(0)<1 D  ; BAD LENGTH
    412         . W "ERROR IN COPY BAD SOURCE LENGTH: ",CPSRC,!
    413         . Q
    414         ; I '$D(@CPDEST@(0)) S @CPDEST@(0)=0 ; IF THE DEST IS EMPTY, INIT
    415         D QUEUE("CPINSTR",CPSRC,1,@CPSRC@(0)) ; BLIST FOR ENTIRE ARRAY
    416         D BUILD("CPINSTR",CPDEST)
    417         Q
    418         ;
    419 QOPEN(QOBLIST,QOXML,QOXPATH)       ; ADD ALL BUT THE LAST LINE OF QOXML TO QOBLIST
    420         ; WARNING NEED TO DO QCLOSE FOR SAME XML BEFORE CALLING BUILD
    421         ; QOXPATH IS OPTIONAL - WILL OPEN INSIDE THE XPATH POINT
    422         ; USED TO INSERT CHILDREN NODES
    423         I @QOXML@(0)<1 D  ; MALFORMED XML
    424         . W "MALFORMED XML PASSED TO QOPEN: ",QOXML,!
    425         . Q
    426         I $G(DEBUG) W "DOING QOPEN",!
    427         N S1,E1,QOT,QOTMP
    428         S S1=1 ; OPEN FROM THE BEGINNING OF THE XML
    429         I $D(QOXPATH) D  ; XPATH PROVIDED
    430         . D QUERY(QOXML,QOXPATH,"QOT") ; INSURE INDEX
    431         . S E1=$P(@QOXML@(QOXPATH),"^",2)-1
    432         I '$D(QOXPATH) D  ; NO XPATH PROVIDED, OPEN AT ROOT
    433         . S E1=@QOXML@(0)-1
    434         D QUEUE(QOBLIST,QOXML,S1,E1)
    435         ; S QOTMP=QOXML_"^"_S1_"^"_E1
    436         ; D PUSH(QOBLIST,QOTMP)
    437         Q
    438         ;
    439 QCLOSE(QCBLIST,QCXML,QCXPATH)     ; CLOSE XML AFTER A QOPEN
    440         ; ADDS THE LIST LINE OF QCXML TO QCBLIST
    441         ; USED TO FINISH INSERTING CHILDERN NODES
    442         ; QCXPATH IS OPTIONAL - IF PROVIDED, WILL CLOSE UNTIL THE END
    443         ; IF QOPEN WAS CALLED WITH XPATH, QCLOSE SHOULD BE TOO
    444         I @QCXML@(0)<1 D  ; MALFORMED XML
    445         . W "MALFORMED XML PASSED TO QCLOSE: ",QCXML,!
    446         I $G(DEBUG) W "GOING TO CLOSE",!
    447         N S1,E1,QCT,QCTMP
    448         S E1=@QCXML@(0) ; CLOSE UNTIL THE END OF THE XML
    449         I $D(QCXPATH) D  ; XPATH PROVIDED
    450         . D QUERY(QCXML,QCXPATH,"QCT") ; INSURE INDEX
    451         . S S1=$P(@QCXML@(QCXPATH),"^",2) ; REMAINING XML
    452         I '$D(QCXPATH) D  ; NO XPATH PROVIDED, CLOSE AT ROOT
    453         . S S1=@QCXML@(0)
    454         D QUEUE(QCBLIST,QCXML,S1,E1)
    455         ; D PUSH(QCBLIST,QCXML_";"_S1_";"_E1)
    456         Q
    457         ;
    458 INSERT(INSXML,INSNEW,INSXPATH)  ; INSERT INSNEW INTO INSXML AT THE
    459         ; INSXPATH XPATH POINT INSXPATH IS OPTIONAL - IF IT IS
    460         ; OMITTED, INSERTION WILL BE AT THE ROOT
    461         ; NOTE INSERT IS NON DESTRUCTIVE AND WILL ADD THE NEW
    462         ; XML AT THE END OF THE XPATH POINT
    463         ; INSXML AND INSNEW ARE PASSED BY NAME INSXPATH IS A VALUE
    464         N INSBLD,INSTMP
    465         I $G(DEBUG) W "DOING INSERT ",INSXML,INSNEW,INSXPATH,!
    466         I $G(DEBUG) F G1=1:1:@INSXML@(0) W @INSXML@(G1),!
    467         I '$D(@INSXML@(1)) D  ; INSERT INTO AN EMPTY ARRAY
    468         . D CP^C0CXPATH(INSNEW,INSXML) ; JUST COPY INTO THE OUTPUT
    469         I $D(@INSXML@(1)) D  ; IF ORIGINAL ARRAY IS NOT EMPTY
    470         . I '$D(@INSXML@(0)) S @INSXML@(0)=$O(@INSXML@(""),-1) ;SET LENGTH
    471         . I $D(INSXPATH) D  ; XPATH PROVIDED
    472         . . D QOPEN("INSBLD",INSXML,INSXPATH) ; COPY THE BEFORE
    473         . . I $G(DEBUG) D PARY^C0CXPATH("INSBLD")
    474         . I '$D(INSXPATH) D  ; NO XPATH PROVIDED, OPEN AT ROOT
    475         . . D QOPEN("INSBLD",INSXML,"//") ; OPEN WITH ROOT XPATH
    476         . I '$D(@INSNEW@(0)) S @INSNEW@(0)=$O(@INSNEW@(""),-1) ;SIZE OF XML
    477         . D QUEUE("INSBLD",INSNEW,1,@INSNEW@(0)) ; COPY IN NEW XML
    478         . I $D(INSXPATH) D  ; XPATH PROVIDED
    479         . . D QCLOSE("INSBLD",INSXML,INSXPATH) ; CLOSE WITH XPATH
    480         . I '$D(INSXPATH) D  ; NO XPATH PROVIDED, CLOSE AT ROOT
    481         . . D QCLOSE("INSBLD",INSXML,"//") ; CLOSE WITH ROOT XPATH
    482         . D BUILD("INSBLD","INSTMP") ; PUT RESULTS IN INDEST
    483         . D CP^C0CXPATH("INSTMP",INSXML) ; COPY BUFFER TO SOURCE
    484         Q
    485         ;
    486 INSINNER(INNXML,INNNEW,INNXPATH)               ; INSERT THE INNER XML OF INNNEW
    487         ; INTO INNXML AT THE INNXPATH XPATH POINT
    488         ;
    489         N INNBLD,UXPATH
    490         N INNTBUF
    491         S INNTBUF=$NA(^TMP($J,"INNTBUF"))
    492         I '$D(INNXPATH) D  ; XPATH NOT PASSED
    493         . S UXPATH="//" ; USE ROOT XPATH
    494         I $D(INNXPATH) S UXPATH=INNXPATH ; USE THE XPATH THAT'S PASSED
    495         I '$D(@INNXML@(0)) D  ; INNXML IS EMPTY
    496         . D QUEUE^C0CXPATH("INNBLD",INNNEW,2,@INNNEW@(0)-1) ; JUST INNER
    497         . D BUILD("INNBLD",INNXML)
    498         I @INNXML@(0)>0  D  ; NOT EMPTY
    499         . D QOPEN("INNBLD",INNXML,UXPATH) ;
    500         . D QUEUE("INNBLD",INNNEW,2,@INNNEW@(0)-1) ; JUST INNER XML
    501         . D QCLOSE("INNBLD",INNXML,UXPATH)
    502         . D BUILD("INNBLD",INNTBUF) ; BUILD TO BUFFER
    503         . D CP(INNTBUF,INNXML) ; COPY BUFFER TO DEST
    504         Q
    505         ;
    506 INSB4(XDEST,XNEW)       ; INSERT XNEW AT THE BEGINNING OF XDEST
    507         ; BUT XDEST AN XNEW ARE PASSED BY NAME
    508         N XBLD,XTMP
    509         D QUEUE("XBLD",XDEST,1,1) ; NEED TO PRESERVE SECTION ROOT
    510         D QUEUE("XBLD",XNEW,1,@XNEW@(0)) ; ALL OF NEW XML FIRST
    511         D QUEUE("XBLD",XDEST,2,@XDEST@(0)) ; FOLLOWED BY THE REST OF SECTION
    512         D BUILD("XBLD","XTMP") ; BUILD THE RESULT
    513         D CP("XTMP",XDEST) ; COPY TO THE DESTINATION
    514         I $G(DEBUG) D PARY("XDEST")
    515         Q
    516         ;
    517 REPLACE(REXML,RENEW,REXPATH)       ; REPLACE THE XML AT THE XPATH POINT
    518         ; WITH RENEW - NOTE THIS WILL DELETE WHAT WAS THERE BEFORE
    519         ; REXML AND RENEW ARE PASSED BY NAME XPATH IS A VALUE
    520         ; THE DELETED XML IS PUT IN ^TMP($J,"REPLACE_OLD")
    521         N REBLD,XFIRST,XLAST,OLD,XNODE,RETMP
    522         S OLD=$NA(^TMP($J,"REPLACE_OLD"))
    523         D QUERY(REXML,REXPATH,OLD) ; CREATE INDEX, TEST XPATH, MAKE OLD
    524         S XNODE=@REXML@(REXPATH) ; PULL OUT FIRST AND LAST LINE PTRS
    525         S XFIRST=$P(XNODE,"^",1)
    526         S XLAST=$P(XNODE,"^",2)
    527         I RENEW="" D  ; WE ARE DELETING A SECTION, MUST SAVE THE TAG
    528         . D QUEUE("REBLD",REXML,1,XFIRST) ; THE BEFORE
    529         . D QUEUE("REBLD",REXML,XLAST,@REXML@(0)) ; THE REST
    530         I RENEW'="" D  ; NEW XML IS NOT NULL
    531         . D QUEUE("REBLD",REXML,1,XFIRST-1) ; THE BEFORE
    532         . D QUEUE("REBLD",RENEW,1,@RENEW@(0)) ; THE NEW
    533         . D QUEUE("REBLD",REXML,XLAST+1,@REXML@(0)) ; THE REST
    534         I $G(DEBUG) W "REPLACE PREBUILD",!
    535         I $G(DEBUG) D PARY("REBLD")
    536         D BUILD("REBLD","RTMP")
    537         K @REXML ; KILL WHAT WAS THERE
    538         D CP("RTMP",REXML) ; COPY IN THE RESULT
    539         Q
    540         ;
    541 DELETE(REXML,REXPATH)      ; DELETE THE XML AT THE XPATH POINT
    542         ; REXML IS PASSED BY NAME XPATH IS A VALUE
    543         N REBLD,XFIRST,XLAST,OLD,XNODE,RETMP
    544         S OLD=$NA(^TMP($J,"REPLACE_OLD"))
    545         D QUERY(REXML,REXPATH,OLD) ; CREATE INDEX, TEST XPATH, MAKE OLD
    546         S XNODE=@REXML@(REXPATH) ; PULL OUT FIRST AND LAST LINE PTRS
    547         S XFIRST=$P(XNODE,"^",1)
    548         S XLAST=$P(XNODE,"^",2)
    549         D QUEUE("REBLD",REXML,1,XFIRST-1) ; THE BEFORE
    550         D QUEUE("REBLD",REXML,XLAST+1,@REXML@(0)) ; THE REST
    551         I $G(DEBUG) D PARY("REBLD")
    552         D BUILD("REBLD","RTMP")
    553         K @REXML ; KILL WHAT WAS THERE
    554         D CP("RTMP",REXML) ; COPY IN THE RESULT
    555         Q
    556         ;
    557 MISSING(IXML,OARY)           ; SEARTH THROUGH INXLM AND PUT ANY @@X@@ VARS IN OARY
    558         ; W "Reporting on the missing",!
    559         ; W OARY
    560         I '$D(@IXML@(0)) W "MALFORMED XML PASSED TO MISSING",! Q
    561         N I
    562         S @OARY@(0)=0 ; INITIALIZED MISSING COUNT
    563         F I=1:1:@IXML@(0)  D   ; LOOP THROUGH WHOLE ARRAY
    564         . I @IXML@(I)?.E1"@@".E D  ; MISSING VARIABLE HERE
    565         . . D PUSH^C0CXPATH(OARY,$P(@IXML@(I),"@@",2)) ; ADD TO OUTARY
    566         . . Q
    567         Q
    568         ;
    569 MAP(IXML,INARY,OXML)    ; SUBSTITUTE MULTIPLE @@X@@ VARS WITH VALUES IN INARY
    570         ; AND PUT THE RESULTS IN OXML
    571         N XCNT
    572         I '$D(DEBUG) S DEBUG=0
    573         I '$D(IXML) W "MALFORMED XML PASSED TO MAP",! Q
    574         I '$D(@IXML@(0)) D  ; INITIALIZE COUNT
    575         . S XCNT=$O(@IXML@(""),-1)
    576         E  S XCNT=@IXML@(0) ;COUNT
    577         I $O(@INARY@(""))="" W "EMPTY ARRAY PASSED TO MAP",! Q
    578         N I,J,TNAM,TVAL,TSTR
    579         S @OXML@(0)=XCNT ; TOTAL LINES IN OUTPUT
    580         F I=1:1:XCNT  D   ; LOOP THROUGH WHOLE ARRAY
    581         . S @OXML@(I)=@IXML@(I) ; COPY THE LINE TO OUTPUT
    582         . I @OXML@(I)?.E1"@@".E D  ; IS THERE A VARIABLE HERE?
    583         . . S TSTR=$P(@IXML@(I),"@@",1) ; INIT TO PART BEFORE VARS
    584         . . F J=2:2:10  D  Q:$P(@IXML@(I),"@@",J+2)=""  ; QUIT IF NO MORE VARS
    585         . . . I DEBUG W "IN MAPPING LOOP: ",TSTR,!
    586         . . . S TNAM=$P(@OXML@(I),"@@",J) ; EXTRACT THE VARIABLE NAME
    587         . . . S TVAL="@@"_$P(@IXML@(I),"@@",J)_"@@" ; DEFAULT UNCHANGED
    588         . . . I $D(@INARY@(TNAM))  D  ; IS THE VARIABLE IN THE MAP?
    589         . . . . I '$D(@INARY@(TNAM,"F")) D  ; NOT A SPECIAL FIELD
    590         . . . . . S TVAL=@INARY@(TNAM) ; PULL OUT MAPPED VALUE
    591         . . . . E  D DOFLD ; PROCESS A FIELD
    592         . . . S TVAL=$$SYMENC^MXMLUTL(TVAL) ;MAKE SURE THE VALUE IS XML SAFE
    593         . . . S TSTR=TSTR_TVAL_$P(@IXML@(I),"@@",J+1) ; ADD VAR AND PART AFTER
    594         . . S @OXML@(I)=TSTR ; COPY LINE WITH MAPPED VALUES
    595         . . I DEBUG W TSTR
    596         I DEBUG W "MAPPED",!
    597         Q
    598         ;
    599 DOFLD   ; PROCESS A FILEMAN FIELD REFERENCED BY A VARIABLE
    600         ;
    601         Q
    602         ;
    603 TRIM(THEXML)    ; TAKES OUT ALL NULL ELEMENTS
    604         ; THEXML IS PASSED BY NAME
    605         N I,J,TMPXML,DEL,FOUND,INTXT
    606         S FOUND=0
    607         S INTXT=0
    608         I $G(DEBUG) W "DELETING EMPTY ELEMENTS",!
    609         F I=1:1:(@THEXML@(0)-1) D  ; LOOP THROUGH ENTIRE ARRAY
    610         . S J=@THEXML@(I)
    611         . I J["<text>" D
    612         . . S INTXT=1 ; IN HTML SECTION, DON'T TRIM
    613         . . I $G(DEBUG) W "IN HTML SECTION",!
    614         . N JM,JP,JPX ; JMINUS AND JPLUS
    615         . S JM=@THEXML@(I-1) ; LINE BEFORE
    616         . I JM["</text>" S INTXT=0 ; LEFT HTML SECTION,START TRIM
    617         . S JP=@THEXML@(I+1) ; LINE AFTER
    618         . I INTXT=0 D  ; IF NOT IN AN HTML SECTION
    619         . . S JPX=$TR(JP,"/","") ; REMOVE THE SLASH
    620         . . I J=JPX D  ; AN EMPTY ELEMENT ON TWO LINES
    621         . . . I $G(DEBUG) W I,J,JP,!
    622         . . . S FOUND=1 ; FOUND SOMETHING TO BE DELETED
    623         . . . S DEL(I)="" ; SET LINE TO DELETE
    624         . . . S DEL(I+1)="" ; SET NEXT LINE TO DELETE
    625         . . I J["><" D  ; AN EMPTY ELEMENT ON ONE LINE
    626         . . . I $G(DEBUG) W I,J,!
    627         . . . S FOUND=1 ; FOUND SOMETHING TO BE DELETED
    628         . . . S DEL(I)="" ; SET THE EMPTY LINE UP TO BE DELETED
    629         . . . I JM=JPX D  ;
    630         . . . . I $G(DEBUG) W I,JM_J_JPX,!
    631         . . . . S DEL(I-1)=""
    632         . . . . S DEL(I+1)="" ; SET THE SURROUNDING LINES FOR DEL
    633         ; . I J'["><" D PUSH("TMPXML",J)
    634         I FOUND D  ; NEED TO DELETE THINGS
    635         . F I=1:1:@THEXML@(0) D  ; COPY ARRAY LEAVING OUT DELELTED LINES
    636         . . I '$D(DEL(I)) D  ; IF THE LINE IS NOT DELETED
    637         . . . D PUSH("TMPXML",@THEXML@(I)) ; COPY TO TMPXML ARRAY
    638         . D CP("TMPXML",THEXML) ; REPLACE THE XML WITH THE COPY
    639         Q FOUND
    640         ;
    641 UNMARK(XSEC)    ; REMOVE MARKUP FROM FIRST AND LAST LINE OF XML
    642         ; XSEC IS A SECTION PASSED BY NAME
    643         N XBLD,XTMP
    644         D QUEUE("XBLD",XSEC,2,@XSEC@(0)-1) ; BUILD LIST FOR INNER XML
    645         D BUILD("XBLD","XTMP") ; BUILD THE RESULT
    646         D CP("XTMP",XSEC) ; REPLACE PASSED XML
    647         Q
    648         ;
    649 PARY(GLO,ZN)          ;PRINT AN ARRAY
    650         ; IF ZN=-1 NO LINE NUMBERS
    651         N I
    652         F I=1:1:@GLO@(0) D  ;
    653         . I $G(ZN)=-1 W @GLO@(I),!
    654         . E  W I_" "_@GLO@(I),!
    655         Q
    656         ;
    657 H2ARY(IARYRTN,IHASH,IPRE)       ; CONVERT IHASH TO RETURN ARRAY
    658         ; IPRE IS OPTIONAL PREFIX FOR THE ELEMENTS. USED FOR MUPTIPLES 1^"VAR"^VALUE
    659         I '$D(IPRE) S IPRE=""
    660         N H2I S H2I=""
    661         ; W $O(@IHASH@(H2I)),!
    662         F  S H2I=$O(@IHASH@(H2I)) Q:H2I=""  D  ; FOR EACH ELEMENT OF THE HASH
    663         . I $QS(H2I,$QL(H2I))="M" D  Q  ; SPECIAL CASE FOR MULTIPLES
    664         . . ;W H2I_"^"_@IHASH@(H2I),!
    665         . . N IH,IHI
    666         . . S IH=$NA(@IHASH@(H2I)) ;
    667         . . S IH2A=$O(@IH@("")) ; SKIP OVER MULTIPLE DISCRIPTOR
    668         . . S IH2=$NA(@IH@(IH2A)) ; PAST THE "M","DIRETIONS" FOR EXAMPLE
    669         . . S IHI="" ; INDEX INTO "M" MULTIPLES
    670         . . F  S IHI=$O(@IH2@(IHI)) Q:IHI=""  D  ; FOR EACH SUB-MULTIPLE
    671         . . . ; W @IH@(IHI)
    672         . . . S IH3=$NA(@IH2@(IHI))
    673         . . . ; W "HEY",IH3,!
    674         . . . D H2ARY(.IARYRTN,IH3,IPRE_";"_IHI) ; RECURSIVE CALL - INDENTED ELEMENTS
    675         . . ; W IH,!
    676         . . ; W "C0CZZ",!
    677         . . ; W $NA(@IHASH@(H2I)),!
    678         . . Q  ;
    679         . D PUSH(IARYRTN,IPRE_"^"_H2I_"^"_@IHASH@(H2I))
    680         . ; W @IARYRTN@(0),!
    681         Q
    682         ;
    683 XVARS(XVRTN,XVIXML)     ; RETURNS AN ARRAY XVRTN OF ALL UNIQUE VARIABLES
    684         ; DEFINED IN INPUT XML XVIXML BY @@VAR@@
    685         ; XVRTN AND XVIXML ARE PASSED BY NAME
    686         ;
    687         N XVI,XVTMP,XVT
    688         F XVI=1:1:@XVIXML@(0) D  ; FOR ALL LINES OF THE XML
    689         . S XVT=@XVIXML@(XVI)
    690         . I XVT["@@" S XVTMP($P(XVT,"@@",2))=XVI
    691         D H2ARY(XVRTN,"XVTMP")
    692         Q
    693         ;
    694 DXVARS(DXIN)    ;DISPLAY ALL VARIABLES IN A TEMPLATE
    695         ; IF PARAMETERS ARE NULL, DEFAULTS TO CCR TEMPLATE
    696         ;
    697         N DXUSE,DTMP ; DXUSE IS NAME OF VARIABLE, DTMP IS VARIABLE IF NOT SUPPLIED
    698         I DXIN="CCR" D  ; NEED TO GO GET CCR TEMPLATE
    699         . D LOAD^C0CCCR0("DTMP") ; LOAD CCR TEMPLATE INTO DXTMP
    700         . S DXUSE="DTMP" ; DXUSE IS NAME
    701         E  I DXIN="CCD" D  ; NEED TO GO GET CCD TEMPLATE
    702         . D LOAD^C0CCCD1("DTMP") ; LOAD CCR TEMPLATE INTO DXTMP
    703         . S DXUSE="DTMP" ; DXUSE IS NAME
    704         E  S DXUSE=DXIN ; IF PASSED THE TEMPLATE TO USE
    705         N DVARS ; PUT VARIABLE NAME RESULTS IN ARRAY HERE
    706         D XVARS("DVARS",DXUSE) ; PULL OUT VARS
    707         D PARY^C0CXPATH("DVARS") ;AND DISPLAY THEM
    708         Q
    709         ;
    710 TEST        ; Run all the test cases
    711         D TESTALL^C0CUNIT("C0CXPAT0")
    712         Q
    713         ;
    714 ZTEST(WHICH)       ; RUN ONE SET OF TESTS
    715         N ZTMP
    716         S DEBUG=1
    717         D ZLOAD^C0CUNIT("ZTMP","C0CXPAT0")
    718         D ZTEST^C0CUNIT(.ZTMP,WHICH)
    719         Q
    720         ;
    721 TLIST     ; LIST THE TESTS
    722         N ZTMP
    723         D ZLOAD^C0CUNIT("ZTMP","C0CXPAT0")
    724         D TLIST^C0CUNIT(.ZTMP)
    725         Q
    726         ;
     1C0SXPATH   ; CCDCCR/GPL - XPATH XML manipulation utilities; 6/1/08
     2 ;;1.0;C0S;;May 19, 2009;Build 2
     3 ;Copyright 2008-2012 George Lilly.  Licensed under the terms of the GNU
     4 ;General Public License See attached copy of the License.
     5 ;
     6 ;This program is free software; you can redistribute it and/or modify
     7 ;it under the terms of the GNU General Public License as published by
     8 ;the Free Software Foundation; either version 2 of the License, or
     9 ;(at your option) any later version.
     10 ;
     11 ;This program is distributed in the hope that it will be useful,
     12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of
     13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     14 ;GNU General Public License for more details.
     15 ;
     16 ;You should have received a copy of the GNU General Public License along
     17 ;with this program; if not, write to the Free Software Foundation, Inc.,
     18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
     19 ;
     20 W "This is an XML XPATH utility library",!
     21 W !
     22 Q
     23 ;
     24OUTPUT(OUTARY,OUTNAME,OUTDIR)   ; WRITE AN ARRAY TO A FILE
     25 ;
     26 N Y
     27 S Y=$$GTF^%ZISH(OUTARY,$QL(OUTARY),OUTDIR,OUTNAME)
     28 I Y Q 1_U_"WROTE FILE: "_OUTNAME_" TO "_OUTDIR
     29 I 'Y Q 0_U_"ERROR WRITING FILE"_OUTNAME_" TO "_OUTDIR
     30 Q
     31 ;
     32PUSH(STK,VAL)   ; pushs VAL onto STK and updates STK(0)
     33 ;  VAL IS A STRING AND STK IS PASSED BY NAME
     34 ;
     35 I '$D(@STK@(0)) S @STK@(0)=0 ; IF THE ARRAY IS EMPTY, INITIALIZE
     36 S @STK@(0)=@STK@(0)+1 ; INCREMENT ARRAY DEPTH
     37 S @STK@(@STK@(0))=VAL ; PUT VAL A THE END OF THE ARRAY
     38 Q
     39 ;
     40POP(STK,VAL)    ; POPS THE LAST VALUE OFF THE STK AND RETURNS IT IN VAL
     41 ; VAL AND STK ARE PASSED BY REFERENCE
     42 ;
     43 I @STK@(0)<1 D  ; IF ARRAY IS EMPTY
     44 . S VAL=""
     45 . S @STK@(0)=0
     46 I @STK@(0)>0  D  ;
     47 . S VAL=@STK@(@STK@(0))
     48 . K @STK@(@STK@(0))
     49 . S @STK@(0)=@STK@(0)-1 ; NEW DEPTH OF THE ARRAY
     50 Q
     51 ;
     52PUSHA(ADEST,ASRC) ; PUSH ASRC ONTO ADEST, BOTH PASSED BY NAME
     53 ;
     54 N ZGI
     55 F ZGI=1:1:@ASRC@(0) D  ; FOR ALL OF THE SOURCE ARRAY
     56 . D PUSH(ADEST,@ASRC@(ZGI)) ; PUSH ONE ELEMENT
     57 Q
     58 ;
     59MKMDX(STK,RTN,INREDUX)  ; MAKES A MUMPS INDEX FROM THE ARRAY STK
     60 ; RTN IS SET TO //FIRST/SECOND/THIRD FOR THREE ARRAY ELEMENTS
     61 ; REDUX IS A STRING TO REMOVE FROM THE RESULT
     62 S RTN=""
     63 N I
     64 ; W "STK= ",STK,!
     65 I @STK@(0)>0  D  ; IF THE ARRAY IS NOT EMPTY
     66 . S RTN="//"_@STK@(1) ; FIRST ELEMENT NEEDS NO SEMICOLON
     67 . I @STK@(0)>1  D  ; SUBSEQUENT ELEMENTS NEED A SEMICOLON
     68 . . F I=2:1:@STK@(0) S RTN=RTN_"/"_@STK@(I)
     69 I $G(INREDUX)'="" S RTN=$P(RTN,INREDUX,1)_$P(RTN,INREDUX,2)
     70 Q
     71 ;
     72XNAME(ISTR)     ; FUNCTION TO EXTRACT A NAME FROM AN XML FRAG
     73 ;  </NAME> AND <NAME ID=XNAME> WILL RETURN NAME
     74 ; ISTR IS PASSED BY VALUE
     75 N CUR,TMP
     76 I ISTR?.E1"<".E  D  ; STRIP OFF LEFT BRACKET
     77 . S TMP=$P(ISTR,"<",2)
     78 I TMP?1"/".E  D  ; ALSO STRIP OFF SLASH IF PRESENT IE </NAME>
     79 . S TMP=$P(TMP,"/",2)
     80 S CUR=$P(TMP,">",1) ; EXTRACT THE NAME
     81 ; W "CUR= ",CUR,!
     82 I CUR?.1"_"1.A1" ".E  D  ; CONTAINS A BLANK IE NAME ID=TEST>
     83 . S CUR=$P(CUR," ",1) ; STRIP OUT BLANK AND AFTER
     84 ; W "CUR2= ",CUR,!
     85 Q CUR
     86 ;
     87XVAL(ISTR) ; EXTRACTS THE VALUE FROM A FRAGMENT OF XML
     88 ; <NAME>VALUE</NAME> WILL RETURN VALUE
     89 N G
     90 S G=$P(ISTR,">",2) ;STRIP OFF <NAME>
     91 Q $P(G,"<",1) ; STRIP OFF </NAME> LEAVING VALUE
     92 ;
     93VDX2VDV(OUTVDV,INVDX) ; CONVERT AN VDX ARRAY TO VDV
     94 ; VDX: @INVDX@(XPATH)=VALUE
     95 ; VDV: @OUTVDV@(X1X2X3X4)=VALUE
     96 ; THE VDV DATANAMES MIGHT BE MORE CONVENIENT FOR USE IN CODE
     97 ; AN INDEX IS PROVIDED TO GO BACK TO VDX FOR CONVERSIONS
     98 ; @VDV@("XPATH",X1X2X3X4)="XPATH"
     99 N ZA,ZI,ZW
     100 S ZI=""
     101 F  S ZI=$O(@INVDX@(ZI)) Q:ZI=""  D  ;
     102 . S ZW=$TR(ZI,"/","") ; ELIMINATE ALL SLASHES - CAMEL CASE VARIABLE NAME
     103 . W ZW,!
     104 . S @OUTVDV@(ZW)=@INVDX@(ZI)
     105 . S @OUTVDV@("XPATH",ZW)=ZI
     106 Q
     107 ;
     108VDX2XPG(OUTXPG,INVDX) ; CONVERT AN VDX ARRAY TO XPG
     109 ; VDX: @VDX@(XPATH)=VALUE
     110 ; XPG: @(VDX(X1,X2,X3,X4))@=VALUE
     111 ; THIS IS A STEP TOWARD GENERATING XML FROM A VDX
     112 N ZA,ZI,ZW
     113 S ZI=""
     114 F  S ZI=$O(@INVDX@(ZI)) Q:ZI=""  D  ;
     115 . S ZW=$E(ZI,3,$L(ZI)) ; STRIP OFF INITIAL //
     116 . S ZW2=$P(ZW,"/",1)
     117 . F ZK=1:1:$L(ZW,"/") D PUSH("ZA",$P(ZW,"/",ZK))
     118 . ;ZWR ZA
     119 . S ZW2=ZA(1)
     120 . F ZK=2:1:ZA(0) D  ;
     121 . . S ZW2=ZW2_""","""_ZA(ZK)
     122 . K ZA
     123 . S ZW2=""""_ZW2_""""
     124 . W ZW2,!
     125 . S ZN=OUTXPG_"("_ZW2_")"
     126 . S @ZN=@INVDX@(ZI)
     127 Q
     128 ;
     129XML2XPG(OUTXPG,INXML) ; CONVERT AN XML ARRAY, PASSED BY NAME TO AN XPG ARRAY
     130 ; XPG MEANS XPATH GLOBAL AND HAS THE FORM @OUTXPG@("X1","X2","X3")=VALUE
     131 ;
     132 ;N G1
     133 D INDEX(INXML,"G1",1) ; PRODUCES A VDX ARRAY IN G1, NO INDEX IS PRODUCED
     134 D VDX2XPG(OUTXPG,"G1") ; CONVERTS THE VDX ARRAY TO XPG FORM
     135 Q
     136 ;
     137DO 
     138 D XPG2XML("^GPL2B","^GPL2A")
     139 Q
     140 ;
     141T1 ; TEST OUT THESE ROUTINES
     142 D XML2XPG("G2","^GPL")
     143 D XPG2XML("G3","G2")
     144 K ^GPLOUT
     145 M ^GPLOUT=G3
     146 W $$OUTPUT^C0CXPATH("^GPLOUT(1)","GPLTEST.xml","/home/vademo2/EHR/p")
     147 Q
     148 ;
     149XPG2XML(OUTXML,INXPG) ;
     150 N C0CN,FWD,ZA,G,GA,ZQ
     151 S ZQ=0 ; QUIT FLAG
     152 F  Q:ZQ=1  D  ; LOOP THROUGH EVERYTHING
     153 . I '$D(C0CN) D  ; FIRST TIME THROUGH
     154 . . K @OUTXML ; MAKE SURE OUTPUT ARRAY IS CLEAR
     155 . . S FWD=1 ; START OUT GOING FORWARD THROUGH SUBSCRIPTS
     156 . . S G=$Q(@INXPG) ; THIS ONE
     157 . . S GN=$Q(@G) ; NEXT ONE
     158 . . S C0CN=1 ; SUBSCRIPT COUNT
     159 . . S ZQ=0 ; QUIT FLAG
     160 . . D ZXO("?xml version=""1.0"" encoding=""UTF-8""?") ;MAKE IT REAL XML
     161 . . I $QS(G,1)="ContinuityOfCareRecord" D  ;
     162 . . . D ZXO("?xml-stylesheet type=""text/xsl"" href=""ccr.xsl""?") ; HACK TO MAKE THE CCR STYLESHEET WORK
     163 . I FWD D  ; GOING FORWARDS
     164 . . I C0CN<$QL(G) D  ; NOT A DATA NODE
     165 . . . S ZA=$QS(G,C0CN) ; PULL OUT THE SUBSCRIPT
     166 . . . D ZXO(ZA) ; AND OPEN AN XML ELEMENT
     167 . . . I @OUTXML@(@OUTXML@(0))="<ContinuityOfCareRecord>" D  ;
     168 . . . . S @OUTXML@(@OUTXML@(0))="<ContinuityOfCareRecord xmlns=""urn:astm-org:CCR"">"
     169 . . . S C0CN=C0CN+1 ; MOVE TO THE NEXT ONE
     170 . . E  D  ; AT THE DATA NODE
     171 . . . S ZA=$QS(G,C0CN) ; PULL OUT THE SUBSCRIPT
     172 . . . D ZXVAL(ZA,@G) ; OUTPUT <X>VAL</X> FOR DATA NODE
     173 . . . S FWD=0 ; GO BACKWARDS
     174 . I 'FWD D  ;GOING BACKWARDS
     175 . . S GN=$Q(@G) ;NEXT XPATH
     176 . . ;W "NEXT!",GN,!
     177 . . S C0CN=C0CN-1 ; PREVIOUS SUBSCRIPT
     178 . . I GN'="" D  ;
     179 . . . I $QS(G,C0CN)'=$QS(GN,C0CN) D  ; NEED TO CLOSE OFF ELEMENT
     180 . . . . D ZXC($QS(G,C0CN)) ;
     181 . . . E  I GN'="" D  ; MORE ELEMENTS AT THIS LEVEL
     182 . . . . S G=$Q(@G) ; ADVANCE TO NEW XPATH
     183 . . . . S C0CN=C0CN+1 ; GET READY TO PROCESS NEXT SUBSCRIPT
     184 . . . . S FWD=1 ; GOING FORWARD NOW
     185 . I (GN="")&(C0CN=1) D  Q  ; WHEN WE ARE ALL DONE
     186 . . D ZXC($QS(G,C0CN)) ; LAST ONE
     187 . . S ZQ=1 ; QUIT NOW
     188 Q
     189 ;
     190ZXO(WHAT) 
     191 D PUSH("GA",WHAT)
     192 D PUSH(OUTXML,"<"_WHAT_">")
     193 Q
     194 ;
     195ZXC(WHAT) 
     196 D POP("GA",.TMP)
     197 D PUSH(OUTXML,"</"_WHAT_">")
     198 Q
     199 ;
     200ZXVAL(WHAT,VAL) 
     201 D PUSH(OUTXML,"<"_WHAT_">"_VAL_"</"_WHAT_">")
     202 Q
     203 ;
     204INDEX(IZXML,VDX,NOINX,TEMPLATE,REDUX) ; parse XML in IZXML and produce
     205 ; an XPATH index; REDUX is a string to be removed from each xpath
     206 ; GPL 7/14/09 OPTIONALLY GENERATE AN XML TEMPLATE IF PASSED BY NAME
     207 ; TEMPLATE IS IDENTICAL TO THE PARSED XML LINE BY LINE
     208 ; EXCEPT THAT DATA VALUES ARE REPLACED WITH @@XPATH@@ FOR THE XPATH OF THE TAG
     209 ; GPL 5/24/09 AND OPTIONALLY PRODUCE THE VDX ARRAY PASSED BY NAME
     210 ; @VDX@("XPATH")=VALUE
     211 ; ex. @IZXML@("XPATH")=FIRSTLINE^LASTLINE
     212 ; WHERE FIRSTLINE AND LASTLINE ARE THE BEGINNING AND ENDING OF THE
     213 ; XML SECTION
     214 ; IZXML IS PASSED BY NAME
     215 ; IF NOINX IS SET TO 1, NO INDEX WILL BE GENERATED, BUT THE VDX WILL BE
     216 N I,LINE,FIRST,LAST,CUR,TMP,MDX,FOUND,CURVAL,DVDX,LCNT
     217 N C0CSTK ; LEAVE OUT FOR DEBUGGING
     218 I '$D(REDUX) S REDUX=""
     219 I '$D(NOINX) S NOINX=0 ; IF NOT PASSED, GENERATE AN INDEX
     220 N ZXML
     221 I NOINX S ZXML=$NA(^TMP("C0CINDEX",$J)) ; TEMP PLACE FOR INDEX TO DISCARD
     222 E  S ZXML=IZXML ; PLACE FOR INDEX TO KEEP
     223 I '$D(@IZXML@(0)) D  ; IF COUNT NOT IN NODE 0 COUNT THEM
     224 . S I="",LCNT=0
     225 . F  S I=$O(@IZXML@(I)) Q:I=""  S LCNT=LCNT+1
     226 E  S LCNT=@IZXML@(0) ; LINE COUNT PASSED IN ARRAY
     227 I LCNT=0  D  Q  ; NO XML PASSED
     228 . W "ERROR IN XML FILE",!
     229 S DVDX=0 ; DEFAULT DO NOT PRODUCE VDX INDEX
     230 I $D(VDX) S DVDX=1 ; IF NAME PASSED, DO VDX
     231 S C0CSTK(0)=0 ; INITIALIZE STACK
     232 K LKASD ; KILL LOOKASIDE ARRAY
     233 D MKLASD(.LKASD,IZXML) ;MAKE LOOK ASIDE BUFFER FOR MULTIPLES
     234 F I=1:1:LCNT  D  ; PROCESS THE ENTIRE ARRAY
     235 . S LINE=@IZXML@(I)
     236 . I $D(TEMPLATE) D  ;IF TEMPLATE IS REQUESTED
     237 . . S @TEMPLATE@(I)=$$CLEAN(LINE)
     238 . ;W LINE,!
     239 . S FOUND=0  ; INTIALIZED FOUND FLAG
     240 . I LINE?.E1"<!".E S FOUND=1 ; SKIP OVER COMMENTS
     241 . I FOUND'=1  D
     242 . . I (LINE?.E1"<"1.E1"</".E)!(LINE?.E1"<"1.E1"/>".E)  D
     243 . . . ; THIS IS THE CASE THERE SECTION BEGINS AND ENDS
     244 . . . ; ON THE SAME LINE
     245 . . . ; W "FOUND ",LINE,!
     246 . . . S FOUND=1  ; SET FOUND FLAG
     247 . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
     248 . . . S CUR=CUR_$G(LKASD(CUR,I)) ; HANDLE MULTIPLES
     249 . . . D PUSH("C0CSTK",CUR) ; ADD TO THE STACK
     250 . . . D MKMDX("C0CSTK",.MDX,REDUX) ; GENERATE THE M INDEX
     251 . . . ; W "MDX=",MDX,!
     252 . . . I $D(@ZXML@(MDX))  D  ; IN THE INDEX, IS A MULTIPLE
     253 . . . . ;I '$D(ZDUP(MDX)) S ZDUP(MDX)=2
     254 . . . . ;E  S ZDUP(MDX)=ZDUP(MDX)+1
     255 . . . . ;W "DUP:",MDX,!
     256 . . . . ;I '$D(CURVAL) S CURVAL=""
     257 . . . . ;I DVDX S @VDX@(MDX_"["_ZDUP(MDX)_"]")=CURVAL
     258 . . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
     259 . . . I '$D(@ZXML@(MDX))  D  ; NOT IN THE INDEX, NOT A MULTIPLE
     260 . . . . S @ZXML@(MDX)=I_"^"_I  ; ADD INDEX ENTRY-FIRST AND LAST
     261 . . . . S CURVAL=$$XVAL(LINE) ; VALUE
     262 . . . . S $P(@ZXML@(MDX),"^",3)=CURVAL ; THIRD PIECE
     263 . . . . I DVDX S @VDX@(MDX)=CURVAL ; FILL IN VDX ARRAY IF REQUESTED
     264 . . . . I $D(TEMPLATE) D  ; IF TEMPLATE IS REQUESTED
     265 . . . . . S LINE=$$CLEAN(LINE) ; CLEAN OUT CONTROL CHARACTERS
     266 . . . . . S @TEMPLATE@(I)=$P(LINE,">",1)_">@@"_MDX_"@@</"_$P(LINE,"</",2)
     267 . . . D POP("C0CSTK",.TMP) ; REMOVE FROM STACK
     268 . I FOUND'=1  D  ; THE LINE DOESN'T CONTAIN THE START AND END
     269 . . I LINE?.E1"</"1.E  D  ; LINE CONTAINS END OF A SECTION
     270 . . . ; W "FOUND ",LINE,!
     271 . . . S FOUND=1  ; SET FOUND FLAG
     272 . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
     273 . . . D MKMDX("C0CSTK",.MDX) ; GENERATE THE M INDEX
     274 . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
     275 . . . D POP("C0CSTK",.TMP) ; REMOVE FROM STACK
     276 . . . S TMP=$P(TMP,"[",1) ; REMOVE [X] FROM MULTIPLE
     277 . . . I TMP'=CUR  D  ; MALFORMED XML, END MUST MATCH START
     278 . . . . W "MALFORMED XML ",CUR,"LINE "_I_LINE,!
     279 . . . . D PARY("C0CSTK") ; PRINT OUT THE STACK FOR DEBUGING
     280 . . . . Q
     281 . I FOUND'=1  D  ; THE LINE MIGHT CONTAIN A SECTION BEGINNING
     282 . . I (LINE?.E1"<"1.E)&(LINE'["?>")  D  ; BEGINNING OF A SECTION
     283 . . . ; W "FOUND ",LINE,!
     284 . . . S FOUND=1  ; SET FOUND FLAG
     285 . . . S CUR=$$XNAME(LINE) ; EXTRACT THE NAME
     286 . . . S CUR=CUR_$G(LKASD(CUR,I)) ; HANDLE MULTIPLES
     287 . . . D PUSH("C0CSTK",CUR) ; ADD TO THE STACK
     288 . . . D MKMDX("C0CSTK",.MDX) ; GENERATE THE M INDEX
     289 . . . ; W "MDX=",MDX,!
     290 . . . I $D(@ZXML@(MDX))  D  ; IN THE INDEX, IS A MULTIPLE
     291 . . . . S $P(@ZXML@(MDX),"^",2)=I ; UPDATE LAST LINE NUMBER
     292 . . . . ;B
     293 . . . I '$D(@ZXML@(MDX))  D  ; NOT IN THE INDEX, NOT A MULTIPLE
     294 . . . . S @ZXML@(MDX)=I_"^" ; INSERT INTO THE INDEX
     295 S @ZXML@("INDEXED")=""
     296 S @ZXML@("//")="1^"_LCNT ; ROOT XPATH
     297 I NOINX K @ZXML ; DELETE UNWANTED INDEX
     298 Q
     299 ;
     300MKLASD(OUTBUF,INARY) ; CREATE A LOOKASIDE BUFFER FOR MULTILPLES
     301 ;
     302 N ZI,ZN,ZA,ZLINE,ZLINE2,CUR,CUR2
     303 F ZI=1:1:LCNT-1  D  ; PROCESS THE ENTIRE ARRAY
     304 . S ZLINE=@IZXML@(ZI)
     305 . I ZI<LCNT S ZLINE2=@IZXML@(ZI+1)
     306 . I ZLINE?.E1"</"1.E  D  ; NEXT LINE CONTAINS END OF A SECTION
     307 . . S CUR=$$XNAME(ZLINE) ; EXTRACT THE NAME
     308 . . I (ZLINE2?.E1"<"1.E)&(ZLINE'["?>")  D  ; BEGINNING OF A SECTION
     309 . . . S CUR2=$$XNAME(ZLINE2) ; EXTRACT THE NAME
     310 . . . I CUR=CUR2 D  ; IF THIS IS A MULTIPLE
     311 . . . . S OUTBUF(CUR,ZI+1)=""
     312 ;ZWR OUTBUF
     313 S ZI=""
     314 F  S ZI=$O(OUTBUF(ZI)) Q:ZI=""  D  ; FOR EACH KIND OF MULTIPLE
     315 . S ZN=$O(OUTBUF(ZI,"")) ; LINE NUMBER OF SECOND MULTIPLE
     316 . F  S ZN=$O(@IZXML@(ZN),-1) Q:ZN=""  I $E($P(@IZXML@(ZN),"<"_ZI,2),1,1)=">" Q  ;
     317 . S OUTBUF(ZI,ZN)=""
     318 S ZA=1,ZI="",ZN=""
     319 F  S ZI=$O(OUTBUF(ZI)) Q:ZI=""  D  ; ADDING THE COUNT FOR THE MULIPLES [x]
     320 . S ZN="",ZA=1
     321 . F  S ZN=$O(OUTBUF(ZI,ZN)) Q:ZN=""  D  ;
     322 . . S OUTBUF(ZI,ZN)="["_ZA_"]"
     323 . . S ZA=ZA+1
     324 Q
     325 ;
     326CLEAN(STR,TR) ; extrinsic function; returns string
     327 ;; Removes all non printable characters from a string.
     328 ;; STR by Value
     329 ;; TR IS OPTIONAL TO IMPROVE PERFORMANCE
     330 N TR,I
     331 I '$D(TR) D  ;
     332 . F I=0:1:31 S TR=$G(TR)_$C(I)
     333 . S TR=TR_$C(127)
     334 QUIT $TR(STR,TR)
     335 ;
     336QUERY(IARY,XPATH,OARY)  ; RETURNS THE XML ARRAY MATCHING THE XPATH EXPRESSION
     337 ; XPATH IS OF THE FORM "//FIRST/SECOND/THIRD"
     338 ; IARY AND OARY ARE PASSED BY NAME
     339 I '$D(@IARY@("INDEXED"))  D  ; INDEX IS NOT PRESENT IN IARY
     340 . D INDEX(IARY) ; GENERATE AN INDEX FOR THE XML
     341 N FIRST,LAST ; FIRST AND LAST LINES OF ARRAY TO RETURN
     342 N TMP,I,J,QXPATH
     343 S FIRST=1
     344 I '$D(@IARY@(0)) D  ; LINE COUNT NOT IN ZERO NODE
     345 . S @IARY@(0)=$O(@IARY@("//"),-1) ; THIS SHOULD USUALLY WORK
     346 S LAST=@IARY@(0) ; FIRST AND LAST DEFAULT TO ROOT
     347 I XPATH'="//" D  ; NOT A ROOT QUERY
     348 . S TMP=@IARY@(XPATH) ; LOOK UP LINE VALUES
     349 . S FIRST=$P(TMP,"^",1)
     350 . S LAST=$P(TMP,"^",2)
     351 K @OARY
     352 S @OARY@(0)=+LAST-FIRST+1
     353 S J=1
     354 FOR I=FIRST:1:LAST  D
     355 . S @OARY@(J)=@IARY@(I) ; COPY THE LINE TO OARY
     356 . S J=J+1
     357 ; ZWR OARY
     358 Q
     359 ;
     360XF(IDX,XPATH)   ; EXTRINSIC TO RETURN THE STARTING LINE FROM AN XPATH
     361 ; INDEX WITH TWO PIECES START^FINISH
     362 ; IDX IS PASSED BY NAME
     363 Q $P(@IDX@(XPATH),"^",1)
     364 ;
     365XL(IDX,XPATH)   ; EXTRINSIC TO RETURN THE LAST LINE FROM AN XPATH
     366 ; INDEX WITH TWO PIECES START^FINISH
     367 ; IDX IS PASSED BY NAME
     368 Q $P(@IDX@(XPATH),"^",2)
     369 ;
     370START(ISTR)     ; EXTRINSIC TO RETURN THE STARTING LINE FROM AN INDEX
     371 ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
     372 ; COMPANION TO FINISH ; IDX IS PASSED BY NAME
     373 Q $P(ISTR,";",2)
     374 ;
     375FINISH(ISTR)    ; EXTRINSIC TO RETURN THE LAST LINE FROM AN INDEX
     376 ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
     377 Q $P(ISTR,";",3)
     378 ;
     379ARRAY(ISTR)     ; EXTRINSIC TO RETURN THE ARRAY REFERENCE FROM AN INDEX
     380 ; TYPE STRING WITH THREE PIECES ARRAY;START;FINISH
     381 Q $P(ISTR,";",1)
     382 ;
     383BUILD(BLIST,BDEST)      ; A COPY MACHINE THAT TAKE INSTRUCTIONS IN ARRAY BLIST
     384 ; WHICH HAVE ARRAY;START;FINISH AND COPIES THEM TO DEST
     385 ; DEST IS CLEARED TO START
     386 ; USES PUSH TO DO THE COPY
     387 N I
     388 K @BDEST
     389 F I=1:1:@BLIST@(0) D  ; FOR EACH INSTRUCTION IN BLIST
     390 . N J,ATMP
     391 . S ATMP=$$ARRAY(@BLIST@(I))
     392 . I $G(DEBUG) W "ATMP=",ATMP,!
     393 . I $G(DEBUG) W @BLIST@(I),!
     394 . F J=$$START(@BLIST@(I)):1:$$FINISH(@BLIST@(I)) D  ;
     395 . . ; FOR EACH LINE IN THIS INSTR
     396 . . I $G(DEBUG) W "BDEST= ",BDEST,!
     397 . . I $G(DEBUG) W "ATMP= ",@ATMP@(J),!
     398 . . D PUSH(BDEST,@ATMP@(J))
     399 Q
     400 ;
     401QUEUE(BLST,ARRAY,FIRST,LAST)    ; ADD AN ENTRY TO A BLIST
     402 ;
     403 I $G(DEBUG) W "QUEUEING ",BLST,!
     404 D PUSH(BLST,ARRAY_";"_FIRST_";"_LAST)
     405 Q
     406 ;
     407CP(CPSRC,CPDEST)        ; COPIES CPSRC TO CPDEST BOTH PASSED BY NAME
     408 ; KILLS CPDEST FIRST
     409 N CPINSTR
     410 I $G(DEBUG) W "MADE IT TO COPY",CPSRC,CPDEST,!
     411 I @CPSRC@(0)<1 D  ; BAD LENGTH
     412 . W "ERROR IN COPY BAD SOURCE LENGTH: ",CPSRC,!
     413 . Q
     414