Changeset 1628 for fmts/trunk
- Timestamp:
- Sep 22, 2013, 6:55:12 PM (11 years ago)
- Location:
- fmts/trunk/p
- Files:
-
- 2 edited
Legend:
- Unmodified
- Added
- Removed
-
fmts/trunk/p/C0XF2N.m
r1539 r1628 8 8 ;the Free Software Foundation; either version 2 of the License, or 9 9 ;(at your option) any later version. 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 INITFARY(ZFARY) 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 USEFARY(ZFARY) 48 49 50 51 52 53 54 55 56 FILEIN 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 IMPORT(FNAME,INDIR,INURL,FARY) 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 WGET(ZURL,FARY) 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 INSRDF(ZRDF,ZNAME,FARY) 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 name2tag(zname) 159 160 161 162 STORETXT(ZTXT,ZNAME,FARY) 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 GETTXT(ZRTN,ZNAME,FARY) 180 181 182 183 184 185 186 187 188 189 190 WHERETXT(ZNAME,FARY) 191 192 193 194 195 196 197 198 199 200 FILEREAD(ZINTMP,ZDIR,ZFNAME,ZLVL) 201 202 203 204 205 206 207 208 TESTPROC 209 210 211 212 213 214 215 VISTAOWL 216 217 218 219 220 221 222 223 224 225 226 227 PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 SHOW(ZN) 373 374 375 376 377 378 379 380 381 ANONS() 382 383 384 NEWG(NGRAPH,NMETA) 385 386 387 388 389 390 391 STARTADD 392 393 394 395 396 ADD(ZG,ZS,ZP,ZO,FARY) 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 LKY5() 445 446 447 448 449 450 451 452 LKY9() 453 454 455 456 457 458 459 460 LKY17() 461 462 463 464 465 466 467 468 469 470 IENOF(ZSTRING,FARY) 471 472 473 474 475 476 477 478 479 480 481 482 483 484 IENOFA(ZOUTARY,INARY,FARY) 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 ADDINN(ZG,ZS,ZARY) 526 527 528 529 530 531 532 533 534 535 536 537 538 539 BULKLOAD(ZBFDA) 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 INDEX(ZIEN,ZN,ZG,ZS,ZP,ZO) 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 REINDEX 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 BLKERR 636 637 638 639 640 641 642 643 DELGRAPH(ZGRF,FARY) 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 TING(ZRTN,ZGRF,FARY) 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 SWUPDIE(ZFDA) 678 679 680 681 682 683 684 685 UPDIE(ZFDA) 686 687 688 689 690 691 692 693 694 695 696 697 698 699 10 ; 11 ;This program is distributed in the hope that it will be useful, 12 ;but WITHOUT ANY WARRANTY; without even the implied warranty of 13 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 ;GNU General Public License for more details. 15 ; 16 ;You should have received a copy of the GNU General Public License along 17 ;with this program; if not, write to the Free Software Foundation, Inc., 18 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. 19 ; 20 Q 21 ; 22 ; This is based on C0XMAIN but experiments with a fast load for triples 23 ; that will write directly to the fileman global 24 ; The file 172.101 is a F2N design style for triples, which means 25 ; that it is a Flat file with no subfiles, all fields at the root 26 ; ... it is a "2" file solution which means all strings are stored in 27 ; ... strings file and pointed to by the triples file 28 ; ... it is an N file because it has generated Node IDs instead of 29 ; ... DINUM which would use the IEN for the Node ID. 30 ; gpl 11/04/2011 31 ; 32 INITFARY(ZFARY) ; INITIALIZE FILE NUMBERS AND OTHER USEFUL THINGS 33 ; FOR THE DEFAULT TRIPLE STORE. USE OTHER VALUES FOR SUPPORTING ADDITIONAL 34 ; TRIPLE STORES 35 I $D(@ZFARY) Q ; ALREADY INITIALIZED 36 S @ZFARY@("C0XTFN")=172.101 ; TRIPLES FILE NUMBER 37 S @ZFARY@("C0XSFN")=172.201 ; TRIPLES STRINGS FILE NUMBER 38 S @ZFARY@("C0XTN")=$NA(^C0X(101)) ; TRIPLES GLOBAL NAME 39 S @ZFARY@("C0XSN")=$NA(^C0X(201)) ; STRING FILE GLOBAL NAME 40 S @ZFARY@("C0XDIR")="/home/glilly/fmts/trunk/samples/smart-new/" 41 S @ZFARY@("BLKLOAD")=1 ; this file supports block load 42 S @ZFARY@("FMTSSTYLE")="F2N" ; fileman style 43 S @ZFARY@("REPLYFMT")="JSON" 44 D USEFARY(ZFARY) 45 Q 46 ; 47 USEFARY(ZFARY) ; INITIALIZES VARIABLES SAVED IN ARRAY ZFARY 48 N ZI S ZI="" 49 F S ZI=$O(@ZFARY@(ZI)) Q:ZI="" D 50 . ;N ZX 51 . S ZX="S "_ZI_"="""_@ZFARY@(ZI)_"""" 52 . ;W !,ZX 53 . X ZX 54 Q 55 ; 56 FILEIN ; INTERACTIVE ENTRY POINT FOR OPTION TO READ IN A FILE 57 I '$D(C0XFARY) D INITFARY("C0XFARY") 58 D USEFARY("C0XFARY") 59 S DIR(0)="F^3:240" 60 S DIR("A")="File Directory" 61 S DIR("B")=C0XDIR 62 D ^DIR 63 I Y="^" Q ; 64 S C0XDIR=Y 65 S C0XFARY("C0XDIR")=Y 66 S DIR(0)="F^3:240" 67 S DIR("A")="File Name" 68 I '$D(C0XFN) S DIR("B")="qds.rdf" 69 E S DIR("B")=C0XFN 70 D ^DIR 71 I Y="" Q ; 72 I Y="^" Q ; 73 S C0XFN=Y 74 D IMPORT(C0XFN,C0XDIR,,"C0XFARY") 75 K C0XFDA 76 Q 77 ; 78 IMPORT(FNAME,INDIR,INURL,FARY) ; EXTRINSIC THAT READS A FILE FROM THE STANDARD 79 ; DIRECTORY, LOADS IT INTO THE TRIPLESTORE AS TEXT, AND RETURNS THE 80 ; NODE NAME OF THE TEXT TRIPLE 81 ; INDIR IS THE OPTIONAL DIRECTORY (DEFAUTS TO STANDARD DIR) 82 ; INURL IS THE OPTIONAL URI FOR ACCESSING THE FILE FROM THE TRIPLE STORE 83 ; FARY IS THE OPTIONAL FILE ARRAY OF THE TRIPLE STORE TO USE 84 I '$D(FARY) D ; 85 . D INITFARY("C0XFARY") 86 . S FARY="C0XFARY" 87 D USEFARY(FARY) 88 N ZD,ZTMP 89 I '$D(INDIR) S INDIR=C0XDIR ; DIRECTORY OF THE RDF FILE 90 I $G(INURL)="" D ; 91 . ;N ZN2 S ZN2=$P(FNAME,".",1)_"_"_$P(FNAME,".",2) ; REMOVE THE DOT 92 . ;S INURL=FDIR_ZN2 93 . S INURL=INDIR_FNAME 94 N ZTMP 95 S ZTMP=$NA(^TMP("C0X",$J,"FILEIN",1)) ; WHERE TO PUT THE INCOMING FILE 96 K @ZTMP ; MAKE SURE IT'S CLEAR 97 S C0XSTART=$$NOW^XLFDT 98 W !,"STARTED: ",C0XSTART 99 W !,"READING IN: ",FNAME 100 I '$$FILEREAD(ZTMP,INDIR,FNAME,4) D Q ; QUIT IF NO SUCCESS 101 . W !,"ERROR READING FILE: ",INDIR,FNAME 102 S ZRDF=$NA(^TMP("C0X",$J,"FILEIN")) ; WITHOUT THE SUBSCRIPT 103 W !,$O(@ZRDF@(""),-1)," LINES READ" 104 D INSRDF(ZRDF,INURL,FARY) ; IMPORT AND PROCESS THE RDF 105 K INURL 106 K C0XFDA 107 ;K ^TMP("MXMLDOM",$J) 108 Q 109 ; 110 WGET(ZURL,FARY) ; GET FROM THE INTERNET AN RDF FILE AND INSERT IT 111 ; 112 I '$D(FARY) D ; 113 . D INITFARY("C0XFARY") 114 . S FARY="C0XFARY" 115 D USEFARY(FARY) 116 ;N ZLOC,ZTMP 117 K ZTMP 118 S ZLOC=$NA(^TMP("C0X","WGET",$J)) 119 K @ZLOC 120 S C0XSTART=$$NOW^XLFDT 121 W !,"STARTED: ",C0XSTART 122 W !,"DOWNLOADING: ",ZURL 123 S OK=$$httpGET^%zewdGTM(ZURL,.ZTMP) 124 M @ZLOC=ZTMP 125 S C0XLINES=$O(@ZLOC@(""),-1) 126 W !,C0XLINES," LINES READ" 127 S C0XDLC=$$NOW^XLFDT ; DOWNLOAD COMPLETE 128 W !,"DOWNLOAD COMPLETE AT ",C0XDLC 129 S C0XDIFF=$$FMDIFF^XLFDT(C0XDLC,C0XSTART,2) 130 W !," ELAPSED TIME: ",C0XDIFF," SECONDS" 131 I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XLINES/C0XDIFF,".")," LINES PER SEC" 132 D INSRDF(ZLOC,ZURL,FARY) 133 Q 134 ; 135 INSRDF(ZRDF,ZNAME,FARY) ; INSERT AN RDF FILE INTO THE STORE AND PROCESS 136 ; ZRDF IS PASSED BY NAME 137 I '$D(FARY) D ; 138 . D INITFARY("C0XFARY") 139 . S FARY="C0XFARY" 140 D USEFARY(FARY) 141 S BATCNT=0 ; BATCH COUNTER 142 S BATMAX=10000 ; TRY BATCHES OF THIS SIZE 143 N ZGRAPH,ZSUBJECT 144 S ZGRAPH="_:G"_$$LKY9 ; RANDOM GRAPH NAME 145 S ZSUBJECT=$$ANONS() ; RANDOM ANOYMOUS SUBJECT 146 D ADD(ZGRAPH,ZSUBJECT,"fmts:url",ZNAME,FARY) 147 N ZTXTNM 148 S ZTXTNM="_TXT_INCOMING_RDF_FILE_"_ZNAME_"_"_$$LKY9 ; NAME FOR TEXT NODE 149 D ADD(ZGRAPH,ZSUBJECT,"fmts:fileSource",ZTXTNM,FARY) 150 D ADD(ZGRAPH,ZSUBJECT,"fmts:fileTag",$$name2tag(ZNAME),FARY) 151 D SWUPDIE(.C0XFDA) ; TRY IT OUT 152 K C0XCNT ;RESET FOR NEXT TIME 153 D STORETXT(ZRDF,ZTXTNM,FARY) 154 W !,"ADDED: ",ZGRAPH," ",ZSUBJECT," fmts:fileSource ",ZTXTNM 155 D PROCESS(.G,ZRDF,ZNAME,ZGRAPH,FARY) ; PARSE AND INSERT THE RDF 156 Q 157 ; 158 name2tag(zname) ; extrinsic which returns a tag derived from a name 159 ; /home/vista/project.xml ==> project 160 q $p($re($p($re(zname),"/")),".") 161 ; 162 STORETXT(ZTXT,ZNAME,FARY) ; STORE TEXT IN THE TRIPLESTORE AT ZNAME 163 ; 164 I '$D(FARY) D ; 165 . D INITFARY("C0XFARY") 166 . S FARY="C0XFARY" 167 D USEFARY(FARY) 168 N ZIEN 169 S ZIEN=$$IENOF(ZNAME,FARY) ; GET THE IEN 170 D CLEAN^DILF 171 K ZERR 172 D WP^DIE(C0XSFN,ZIEN_",",1,,ZTXT,"ZERR") 173 I $D(ZERR) D Q ; 174 . W !,"ERROR CREATING WORD PROCESSING FIELD" 175 . S C0XERR="ERROR CREATING WORD PROCESSING FIELD" 176 . D ^%ZTER ; error trap 177 Q 178 ; 179 GETTXT(ZRTN,ZNAME,FARY) ; RETURNS RDF SOURCE OR OTHER TEXT 180 ; ZRTN IS PASSED BY REFERENCE 181 I '$D(FARY) D ; 182 . D INITFARY("C0XFARY") 183 . S FARY="C0XFARY" 184 D USEFARY(FARY) 185 N ZIEN 186 S ZIEN=$$IENOF(ZNAME) 187 S OK=$$GET1^DIQ(C0XSFN,ZIEN_",",1,,"ZRTN") 188 Q 189 ; 190 WHERETXT(ZNAME,FARY) ; EXTRINSIC WHICH RETURNS THE NAME OF THE GLOBAL 191 ; WHERE THE TEXT IS LOCATED. NAME IS THE NAME OF THE STRING 192 I '$D(FARY) D ; 193 . D INITFARY("C0XFARY") 194 . S FARY="C0XFARY" 195 D USEFARY(FARY) 196 N ZIEN 197 S ZIEN=$$IENOF(ZNAME) 198 Q $NA(@C0XSN@(ZIEN,1)) 199 ; 200 FILEREAD(ZINTMP,ZDIR,ZFNAME,ZLVL) ; READS A FILE INTO ZINTMP USING FTG^%ZISH 201 ; ZINTMP IS PASSED BY NAME AND INCLUDES THE NEW SUBSCRIPT 202 ; IE ^TMP("C0X","FILEIN",1) 203 ; ZLVL IN THIS CASE WOULD BE 3 INCREMENTING THE 1 204 ; EXTRINSIC WHICH RETURNS THE RESULT OF FTG^%ZISH 205 S OK=$$FTG^%ZISH(ZDIR,FNAME,ZINTMP,ZLVL) 206 Q OK 207 ; 208 TESTPROC ; TEST PROCESS WITH EXISTING SMALL RDF FILE 209 S ZIN=$NA(^TMP("C0X",12226,"FILEIN")) 210 S ZGRAPH="/test/rdfFile" 211 S ZM="/test/rdfFile/meta" 212 D PROCESS(.G,ZIN,ZGRAPH,ZM) 213 Q 214 ; 215 VISTAOWL ; 216 S ZRDF=$NA(^TMP("C0X",542,"FILEIN")) 217 S ZNAME="/home/glilly/vistaowl/VistAOWL.owl" 218 S ZGRAPH="_:G431590209" 219 S FARY="C0XFARY" 220 D INITFARY(FARY) 221 S C0XDOCID=1 222 S BATCNT=0 223 S BATMAX=10000 224 D PROCESS(.G,ZRDF,ZGRAPH,ZNAME,FARY) 225 Q 226 ; 227 PROCESS(ZRTN,ZRDF,ZGRF,ZMETA,FARY) ; PROCESS AN INCOMING RDF FILE 228 ; ZRTN IS PASS BY REFERENCE AND RETURNS MESSAGES ABOUT THE PROCESSING 229 ; ZRDF IS PASSED BY NAME AND IS THE GLOBAL CONTAINING THE RDF FILE 230 ; ZGRF IS THE NAME OF THE GRAPH TO USE IN THE TRIPLE STORE FOR RESULTS 231 ; ZMETA IS OPTIONAL AND IS THE NAME OF THE GRAPH TO STORE METADATA 232 ; 233 I '$D(FARY) D ; 234 . D INITFARY("C0XFARY") 235 . S FARY="C0XFARY" 236 D USEFARY(FARY) 237 ;N BATCNT 238 ;N BATMAX 239 ; -- first parse the rdf file with the MXML parser 240 ;S C0XDOCID=$$PARSE^C0CNHIN(ZRDF,"C0XARRAY") ; PARSE WITH MXML 241 S C0XDLC2=$$NOW^XLFDT ; START OF PARSE 242 I @ZRDF@(1)'["<?xml" D Q ; 243 . K @ZRDF ; don't need the input buffer 244 . W !,"Not an XML file" 245 S C0XDOCID=$$EN^MXMLDOM(ZRDF,"W") ; 246 ;B 247 K @ZRDF ; DON'T NEED INPUT BUFFER ANYMORE 248 ; -- assign the MXLM dom global name to ZDOM 249 S ZDOM=$NA(^TMP("MXMLDOM",$J,C0XDOCID)) 250 ;S ZDOM=$NA(^TMP("MXMLDOM",16850,C0XDOCID)) ;VISTAOWL DOM 251 S C0XNODE=$O(@ZDOM@(""),-1) 252 W !,C0XNODE," XML NODES PARSED" 253 S C0XPRS=$$NOW^XLFDT ; PARSE COMPLETE 254 W !,"PARSE COMPLETE AT ",C0XPRS 255 S C0XDIFF=$$FMDIFF^XLFDT(C0XPRS,C0XDLC2,2) 256 W !," ELAPSED TIME: ",C0XDIFF," SECONDS" 257 I C0XDIFF'=0 D ; 258 . W !," APPROXIMATELY ",$P(C0XNODE/C0XDIFF,".")," NODES PER SECOND" 259 ; -- populate the metagraph to point to the graph with status unfinished 260 S METAS=$$ANONS ; GET AN ANONOMOUS RANDOM SUBJECT 261 I '$D(ZMETA) S ZMETA="_:G"_$$LKY9 ; RANDOM GRAPH NAME FOR METAGRAPH 262 D ADD(ZMETA,METAS,"fmts:about",ZGRF,FARY) ; POINT THE META TO THE GRAPH 263 D ADD(ZMETA,METAS,"fmts:status","unfinished",FARY) ; mark as unfinished 264 W !,"INSERTING GRAPH: ",ZGRF 265 ;S C0XDATE=$$FMDTOUTC^C0CUTIL($$NOW^XLFDT,"DT") 266 S C0XDATE=$$NOW^XLFDT 267 D ADD(ZMETA,METAS,"fmts:dateTime",C0XDATE,FARY) 268 D SWUPDIE(.C0XFDA) ; commit the metagraph changes to the triple store 269 ; -- 270 ; -- pull out the vocabularies in the RDF statement. marked with xmlns: 271 ; -- put them in a local variable for quick reference 272 ; -- TODO: create a graph for vocabularies and validate incoming against it 273 ; 274 S C0XVOC="" 275 N ZI,ZJ,ZK S ZI="" 276 F S ZI=$O(@ZDOM@(1,"A",ZI)) Q:ZI="" D ; FOR EACH xmlns 277 . S ZVOC=$P(ZI,"xmlns:",2) 278 . I ZVOC'="" S C0XVOC(ZVOC)=$G(@ZDOM@(1,"A",ZI)) 279 I $D(DEBUG) D ; 280 . W !,"VOCABS:" 281 . N ZZ S ZZ="" 282 . F S ZZ=$O(C0XVOC(ZZ)) Q:ZZ="" W !,ZZ,":",C0XVOC(ZZ) 283 ; 284 ; -- look for children called rdf:Description. quit if none. not an rdf file 285 ; 286 S C0XTYPE("rdf:Description")=1 287 S C0XTYPE("owl:ObjectProperty")=1 288 S C0XTYPE("owl:Ontology")=1 289 S C0XTYPE("owl:Class")=1 290 S C0XTYPE("rdfs:subClassOf")=1 291 S C0XTYPE("rdf:RDF")=1 292 S ZI=$O(@ZDOM@(1,"C","")) 293 I '$G(C0XTYPE(@ZDOM@(1,"C",ZI))) D ;Q ; not an rdf file 294 . W !,"Unusual RDF file ",@ZDOM@(1,"C",ZI) 295 . ;W !,"Error. Not an RDF file. Cannot process." 296 . D SHOW(1) 297 ; 298 ; -- now process the rdf description children 299 ; 300 S ZI="" 301 S (C0XSUB,C0XPRE,C0XOBJ)="" ; INITIALIZE subject, object and predicate 302 F S ZI=$O(@ZDOM@(1,"C",ZI)) Q:ZI="" D ; 303 . ; -- we are skipping any child that is not rdf:Description 304 . ; -- TODO: check to see if this is right in general 305 . ; 306 . IF '$G(C0XTYPE(@ZDOM@(1,"C",ZI))) D Q ; 307 . . W !,"SKIPPING NODE: ",ZI 308 . ; -- now looking for the subject for the triples 309 . S ZX=$G(@ZDOM@(ZI,"A","rdf:about")) 310 . I ZX'="" D ; we have the subject 311 . . ;W " about: ",ZX 312 . . S C0XSUB=ZX 313 . E D ; 314 . . S ZX=$G(@ZDOM@(ZI,"A","rdf:nodeID")) ; node id is another style of subject 315 . . I ZX'="" D ; 316 . . . S C0XSUB=ZX 317 . I C0XSUB="" S C0XSUB=$$ANONS ; DEFAULT TO BLANK SUBJECT 318 . ; 319 . ; -- we now have the subject. the children of this node have the rest 320 . ; 321 . S ZJ="" ; for the children of the rdf:Description nodes 322 . F S ZJ=$O(@ZDOM@(ZI,"C",ZJ)) Q:ZJ="" D ; for each child 323 . . S C0XPRE=@ZDOM@(ZJ) ; the predicate without a prefix 324 . . S ZX=$G(@ZDOM@(ZJ,"A","xmlns")) ; name space 325 . . I ZX'="" S C0XPRE=ZX_C0XPRE ; add the namespace prefix 326 . . I C0XPRE[":" D ; expand using vocabulary 327 . . . N ZB,ZA 328 . . . S ZB=$P(C0XPRE,":",1) 329 . . . S ZA=$P(C0XPRE,":",2) 330 . . . I $G(C0XVOC(ZB))'="" D ; 331 . . . . S C0XPRE=C0XVOC(ZB)_ZA ; expanded 332 . . S ZY=$G(@ZDOM@(ZJ,"A","rdf:resource")) ; potential object 333 . . I ZY'="" D Q ; 334 . . . S C0XOBJ=$$EXT^C0XUTIL(ZY) ; object 335 . . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; finally. our first real triple 336 . . ; -- this is an else because of the quit above 337 . . S ZX=$G(@ZDOM@(ZJ,"A","rdf:nodeID")) ; fishing for nodeId object 338 . . I ZX'="" D Q ; got one 339 . . . S C0XOBJ=ZX ; we are using the incoming nodeIDs as object/subject 340 . . . ; without change... this could be foolish .. look at it again later 341 . . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node 342 . . S C0XOBJ=$G(@ZDOM@(ZJ,"T",1)) ; hopefully an object is here 343 . . I C0XOBJ="" D Q ; not a happy situation 344 . . . W !,"ERROR, NO OBJECT FOUND FOR NODE: ",ZJ 345 . . S C0XOBJ=$$EXT^C0XUTIL(C0XOBJ) ; might be namespaced 346 . . D ADD(ZGRF,C0XSUB,C0XPRE,C0XOBJ) ; go for it and add a node 347 S C0XTRP=$$NOW^XLFDT ; PARSE COMPLETE 348 W !,"TRIPLES COMPLETE AT ",C0XTRP 349 S C0XDIFF=$$FMDIFF^XLFDT(C0XTRP,C0XPRS,2) 350 W !," ELAPSED TIME: ",C0XDIFF," SECONDS" 351 I C0XDIFF'=0 D ; 352 . W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND" 353 W !,"INSERTING ",C0XCNT," TRIPLES" 354 I $D(C0XFDA) D ; 355 . I $G(BLKLOAD) D ; 356 . . D BULKLOAD(.C0XFDA) 357 . E D ; 358 . . D UPDIE(.C0XFDA) ; commit the updates to the file 359 ; next, mark the graph as finished 360 S C0XINS=$$NOW^XLFDT ; PARSE COMPLETE 361 W !,"INSERTION COMPLETE AT ",C0XPRS 362 S C0XDIFF=$$FMDIFF^XLFDT(C0XINS,C0XTRP,2) 363 W !," ELAPSED TIME: ",C0XDIFF," SECONDS" 364 I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," NODES PER SECOND" 365 S C0XEND=$$NOW^XLFDT 366 W !," ENDED AT: ",C0XEND 367 S C0XDIFF=$$FMDIFF^XLFDT(C0XEND,C0XSTART,2) 368 W !," ELAPSED TIME: ",C0XDIFF," SECONDS" 369 I C0XDIFF'=0 W !," APPROXIMATELY ",$P(C0XCNT/C0XDIFF,".")," TRIPLES PER SECOND" 370 Q 371 ; 372 SHOW(ZN) ; 373 I '$D(C0XJOB) S C0XJOB=$J 374 N ZD 375 S ZD=$NA(^TMP("MXMLDOM",C0XJOB,1,ZN)) 376 W ZD,"=",@ZD 377 F S ZD=$Q(@ZD) Q:$QS(ZD,4)'=ZN W !,ZD,"=",@ZD 378 ;ZWR ^TMP("MXMLDOM",C0XJOB,1,ZN,*) 379 Q 380 ; 381 ANONS() ; RETURNS AN ANONOMOUS SUBJECT 382 Q "iDPsDPss"_$$LKY9 383 ; 384 NEWG(NGRAPH,NMETA) ; CREATES A NEW META GRAPH, MARKS IT AS UNFINISHED 385 ; THEN CREATES A NEW GRAPH AND POINTS THE METAGRAPH TO IT 386 ; NGRAPH AND NMETA ARE PASSED BY REFERENCE AND ARE THE RETURN 387 S NGRAPH="G"_$$LKY9 388 S NMETA=NGRAPH_"A" 389 Q 390 ; 391 STARTADD ; INITIALIZE C0XFDA AND BATCNT 392 K C0XFDA 393 K BATCNT 394 Q 395 ; 396 ADD(ZG,ZS,ZP,ZO,FARY) ; ADD A TRIPLE TO THE TRIPLESTORE. ALL VALUES ARE TEXT 397 ; THE FDA IS SET UP BUT THE FILES ARE NOT UPDATED. CALL UPDIE TO COMPLETE 398 I '$D(FARY) D ; 399 . D INITFARY("C0XFARY") 400 . S FARY="C0XFARY" 401 D USEFARY(FARY) 402 I '$D(C0XCNT) S C0XCNT=0 403 N ZNODE 404 S ZNODE="N"_$$LKY17 405 N ZNARY ; GET READY TO CALL IENOFA 406 I (ZG="")!(ZS="")!(ZP="")!(ZO="") D Q ; 407 . I $G(DEBUG) W !,"Error Empty String ZG:"_ZG_" ZS:"_ZS_" ZP:"_ZP_" ZO"_ZO 408 S ZNARY("ZG",ZG)="" 409 S ZNARY("ZS",ZS)="" 410 S ZNARY("ZP",ZP)="" 411 S ZNARY("ZO",ZO)="" 412 D IENOFA(.ZIENS,.ZNARY,FARY) ; RESOLVE/ADD STRINGS 413 ;S ZGIEN=$$IENOF(ZG) ; LAYGO TO GET IEN 414 ;S ZSIEN=$$IENOF(ZS) 415 ;S ZPIEN=$$IENOF(ZP) 416 ;S ZOIEN=$$IENOF(ZO) 417 ;I $D(C0XFDA) D UPDIE ; ADD THE STRINGS IF NEEDED 418 I '$D(BATCNT) S BATCNT=0 419 S BATCNT=BATCNT+1 420 S C0XCNT=C0XCNT+1 421 I $G(BLKLOAD)=1 D ; we are using bulk load 422 . S C0XFDA(C0XTFN,BATCNT,.01)=ZNODE 423 . S C0XFDA(C0XTFN,BATCNT,.02)=$O(ZIENS("IEN","ZG","")) 424 . S C0XFDA(C0XTFN,BATCNT,.03)=$O(ZIENS("IEN","ZS","")) 425 . S C0XFDA(C0XTFN,BATCNT,.04)=$O(ZIENS("IEN","ZP","")) 426 . S C0XFDA(C0XTFN,BATCNT,.05)=$O(ZIENS("IEN","ZO","")) 427 E D ; 428 . S C0XFDA(C0XTFN,"?+"_BATCNT_",",.01)=ZNODE 429 . S C0XFDA(C0XTFN,"?+"_BATCNT_",",.02)=$O(ZIENS("IEN","ZG","")) 430 . S C0XFDA(C0XTFN,"?+"_BATCNT_",",.03)=$O(ZIENS("IEN","ZS","")) 431 . S C0XFDA(C0XTFN,"?+"_BATCNT_",",.04)=$O(ZIENS("IEN","ZP","")) 432 . S C0XFDA(C0XTFN,"?+"_BATCNT_",",.05)=$O(ZIENS("IEN","ZO","")) 433 I '$D(BATMAX) S BATMAX=10000 434 I BATCNT=BATMAX D ; BATCH IS DONE 435 . I $G(BLKLOAD) D ; bulk load 436 . . D BULKLOAD(.C0XFDA) ; bulk load the batch 437 . E D ; no bulk load 438 . . D UPDIE(.C0XFDA) 439 . K C0XFDA 440 . S BATCNT=0 ; RESET COUNTER 441 ; REMEMBER TO CALL UPDIE WHEN YOU'RE DONE 442 Q 443 ; 444 LKY5() ;EXTRINIC THAT RETURNS A RANDOM 5 DIGIT NUMBER. USED FOR GENERATING 445 ; UNIQUE NODE AND GRAPH NAMES 446 N ZN,ZI 447 S ZN="" 448 F ZI=1:1:5 D ; 449 . S ZN=ZN_$R(10) 450 Q ZN 451 ; 452 LKY9() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING 453 ; UNIQUE NODE AND GRAPH NAMES 454 N ZN,ZI 455 S ZN="" 456 F ZI=1:1:9 D ; 457 . S ZN=ZN_$R(10) 458 Q ZN 459 ; 460 LKY17() ;EXTRINIC THAT RETURNS A RANDOM 9 DIGIT NUMBER. USED FOR GENERATING 461 ; UNIQUE NODE AND GRAPH NAMES 462 N ZN,ZI 463 S ZN="" 464 F ZI=1:1:17 D ; 465 . S ZN=ZN_$R(10) 466 Q ZN 467 ; 468 ; these routines add the string if it is not found 469 ; 470 IENOF(ZSTRING,FARY) ; EXTRINSIC WHICH RETURNS THE IEN OF ZS IN THE STRINGS FILE 471 I '$D(FARY) D ; 472 . D INITFARY("C0XFARY") 473 . S FARY="C0XFARY" 474 N ZIEN 475 I $G(ZSTRING)="" Q "" ; NO STRING 476 S ZIEN=$O(@C0XSN@("B",ZSTRING,"")) 477 I ZIEN="" D ; 478 . S C0XFDA2(C0XSFN,"+1,",.01)=ZSTRING 479 . D UPDIE(.C0XFDA2) 480 . S ZIEN=$O(@C0XSN@("B",ZSTRING,"")) 481 . K C0XFDA2 482 Q ZIEN 483 ; 484 IENOFA(ZOUTARY,INARY,FARY) ; RESOLVE STRINGS TO IEN IN STRINGS FILE 485 ; OR ADD THEM IF 486 ; MISSING. ZINARY AND ZOUTARY ARE PASSED BY REFERENCE 487 ; ZINARY LOOKS LIKE ZINARY("VAR","VAL")="" 488 ; RETURNS IN ZOUTARY OF THE FORM ZOUTARY("IEN","VAR",IEN)="" 489 I '$D(FARY) D ; 490 . D INITFARY("C0XFARY") 491 . S FARY="C0XFARY" 492 K ZOUTARY ; START WITH CLEAN RESULTS 493 K C0XFDA2 ; USE A SEPARATE FDA FOR THIS 494 I '$D(C0XVOC) D VOCINIT^C0XUTIL 495 N ZINARY 496 N ZI S ZI="" 497 F S ZI=$O(INARY(ZI)) Q:ZI="" D ; 498 . N ZK 499 . S ZK=$O(INARY(ZI,"")) 500 . S ZINARY($$EXT^C0XUTIL(ZI),$$EXT^C0XUTIL(ZK))="" 501 N ZV,ZIEN,ABORT 502 S ABORT=0 503 N ZCNT S ZCNT=0 504 F S ZI=$O(ZINARY(ZI)) Q:(ZI="")!+ABORT D ; LOOK FOR MISSING STRINGS 505 . S ZV=$O(ZINARY(ZI,"")) 506 . I ZV="" S ABORT=1 Q ; abandon quad -- missing an entry 507 . I ZV["^" S ZV=$TR(ZV,"^","|") 508 . I $O(@C0XSN@("B",ZV,""))="" D ; 509 . . S ZCNT=ZCNT+1 510 . . S C0XFDA2(C0XSFN,"+"_ZCNT_",",.01)=ZV 511 I +ABORT Q ; 512 I $D(C0XFDA2) D ; 513 . D UPDIE(.C0XFDA2) ; ADD MISSING STRINGS 514 . K C0XFDA2 ; CLEAN UP 515 F S ZI=$O(ZINARY(ZI)) Q:ZI="" D ; NOW GET ALL IENS 516 . S ZV=$O(ZINARY(ZI,"")) 517 . I ZV["^" S ZV=$TR(ZV,"^","|") 518 . S ZIEN=$O(@C0XSN@("B",ZV,"")) ; THEY SHOULD BE THERE NOW 519 . I ZIEN="" D ; 520 . . W !,"ERROR ADDING STRING: ",ZV 521 . . B 522 . S ZOUTARY("IEN",ZI,ZIEN)="" 523 Q 524 ; 525 ADDINN(ZG,ZS,ZARY) ; ADD IF NOT NULL 526 ; ZG IS THE GRAPH NAME, PASSED BY VALUE 527 ; ZS IS THE SUBJECT, PASSED BY VALUE 528 ; ZARY IS AN ARRAY, PASSED BY REFERENCE OF THE PREDICATE AND OBJECT 529 ; FORMAT IS ZARY(PRED)=OBJ 530 N ZI S ZI="" 531 F S ZI=$O(ZARY(ZI)) Q:ZI="" D ; 532 . ;I ZARY(ZI)="" S ZARY(ZI)="NULL" 533 . I ZARY(ZI)'="" D ; 534 . . D ADD^C0XF2N(ZG,ZS,ZI,ZARY(ZI)) 535 . . I $D(DEBUG) W !,"ADDING",ZI," ",ZARY(ZI) 536 ;ZWR ZARY 537 Q 538 ; 539 BULKLOAD(ZBFDA) ; BULK LOADER FOR LOADING TRIPLES INTO FILE 172.101 540 ; USING GLOBAL SETS INSTEAD OF UPDATE^DIE 541 ; QUITS IF FILE IS NOT 172.101 542 ; EXPECTS AN FDA WITHOUT STRINGS FOR THE IENS, STARTING AT 1 543 ; QUITS IF FIRST ENTRY IS NOT IENS 1 544 ; ASSUMES THAT THE LAST IENS IS THE COUNT OF ENTRIES 545 ; ZBFDA IS PASSED BY REFERENCE 546 ; 547 ; -- reserves a block of iens from file 172.101 by locking the zero node 548 ; -- ^C0X(101,0) and adding the count of entries to piece 2 and 3 549 ; -- then unlocking to minimize the duration of the lock 550 ; 551 I $D(DEBUG) W !,"USING BULKLOAD" 552 I '$D(ZBFDA) Q ; EMPTY FDA 553 I $O(ZBFDA(""))'=172.101 Q ; WRONG FILE 554 N ZCNT,ZP3,ZP4 555 ; -- find the number of nodes to insert 556 S ZCNT=$O(ZBFDA(172.101,""),-1) 557 I ZCNT="" D Q ; 558 . W !,"ERROR IN BULK LOAD - INVALID NODE COUNT" 559 . B 560 ; -- lock the zero node and reserve a block of iens to insert 561 I $D(DEBUG) W !,"LOCKING ZERO NODE" 562 LOCK +^C0X(101,0) 563 S ZP3=$P(^C0X(101,0),U,3) 564 S ZP4=$P(^C0X(101,0),U,4) 565 S $P(^C0X(101,0),U,3)=ZP3+ZCNT+1 566 S $P(^C0X(101,0),U,4)=ZP4+ZCNT+1 567 LOCK -^C0X(101,0) 568 N ZI,ZN,ZG,ZS,ZP,ZO,ZIEN,ZBASE 569 S ZBASE=ZP3 ; the last ien in the file 570 I $D(DEBUG) W !,"ZERO NODE UNLOCKED, IENS RESERVED=",ZCNT 571 I $D(DEBUG) W !,$$NOW^XLFDT 572 S ZI="" 573 F S ZI=$O(ZBFDA(172.101,ZI)) Q:ZI="" D ; 574 . S ZN=$G(ZBFDA(172.101,ZI,.01)) ; node name 575 . I ZN="" D BLKERR Q ; 576 . S ZG=$G(ZBFDA(172.101,ZI,.02)) ; graph pointer 577 . I ZG="" D BLKERR Q ; 578 . S ZS=$G(ZBFDA(172.101,ZI,.03)) ; subject pointer 579 . I ZS="" D BLKERR Q ; 580 . S ZP=$G(ZBFDA(172.101,ZI,.04)) ; predicate pointer 581 . I ZP="" D BLKERR Q ; 582 . S ZO=$G(ZBFDA(172.101,ZI,.05)) ; object pointer 583 . I ZO="" D BLKERR Q ; 584 . S ZIEN=ZI+ZBASE ; the new ien 585 . S ^C0X(101,ZIEN,0)=ZN_U_ZG_U_ZS_U_ZP_U_ZO ; set the zero node 586 . D INDEX(ZIEN,ZN,ZG,ZS,ZP,ZO) 587 Q 588 ; 589 INDEX(ZIEN,ZN,ZG,ZS,ZP,ZO) ; HARD SET THE INDEX FOR ONE ENTRY 590 S ^C0X(101,"B",ZN,ZIEN)="" ; the B index 591 S ^C0X(101,"G",ZG,ZIEN)="" ; the G for Graph index 592 S ^C0X(101,"SPO",ZS,ZP,ZO,ZIEN)="" 593 S ^C0X(101,"SOP",ZS,ZO,ZP,ZIEN)="" 594 S ^C0X(101,"OPS",ZO,ZP,ZS,ZIEN)="" 595 S ^C0X(101,"OSP",ZO,ZS,ZP,ZIEN)="" 596 S ^C0X(101,"PSO",ZP,ZS,ZO,ZIEN)="" 597 S ^C0X(101,"POS",ZP,ZO,ZS,ZIEN)="" 598 S ^C0X(101,"GOPS",ZG,ZO,ZP,ZS,ZIEN)="" 599 S ^C0X(101,"GOSP",ZG,ZO,ZS,ZP,ZIEN)="" 600 S ^C0X(101,"GPSO",ZG,ZP,ZS,ZO,ZIEN)="" 601 S ^C0X(101,"GPOS",ZG,ZP,ZO,ZS,ZIEN)="" 602 S ^C0X(101,"GSPO",ZG,ZS,ZP,ZO,ZIEN)="" 603 S ^C0X(101,"GSOP",ZG,ZS,ZO,ZP,ZIEN)="" 604 Q 605 ; 606 REINDEX ; REINDEX THE ^C0X(101, TRIPLE STORE 607 K ^C0X(101,"B") 608 K ^C0X(101,"G") 609 K ^C0X(101,"SPO") 610 K ^C0X(101,"SOP") 611 K ^C0X(101,"OPS") 612 K ^C0X(101,"OSP") 613 K ^C0X(101,"PSO") 614 K ^C0X(101,"POS") 615 K ^C0X(101,"GOPS") 616 K ^C0X(101,"GOSP") 617 K ^C0X(101,"GPSO") 618 K ^C0X(101,"GPOS") 619 K ^C0X(101,"GSPO") 620 K ^C0X(101,"GSOP") 621 N ZIEN,ZZ 622 S ZIEN=0 623 F S ZIEN=$O(^C0X(101,ZIEN)) Q:+ZIEN=0 D ; FOR EACH NODE 624 . S ZZ=$G(^C0X(101,ZIEN,0)) 625 . I ZZ="" D Q ; 626 . . W !,"ERROR REINDEXING NODE ",ZI 627 . S ZN=$P(ZZ,"^",1) 628 . S ZG=$P(ZZ,"^",2) 629 . S ZS=$P(ZZ,"^",3) 630 . S ZP=$P(ZZ,"^",4) 631 . S ZO=$P(ZZ,"^",5) 632 . D INDEX(ZIEN,ZN,ZG,ZS,ZP,ZO) 633 Q 634 ; 635 BLKERR ; 636 W !,"ERROR IN BULK LOAD" 637 S C0XERR="ERROR IN BULK LOAD" 638 S C0XLOC=ZBFDA(ZI) 639 D ^%ZTER ; report the error 640 B 641 Q 642 ; 643 DELGRAPH(ZGRF,FARY) ; delete a graph from the triplestore 644 ; (doesn't delete strings) 645 ; 646 I '$D(FARY) D ; 647 . D INITFARY("C0XFARY") 648 . S FARY="C0XFARY" 649 D USEFARY(FARY) 650 N ZGRAPH 651 D TING(.ZGRAPH,ZGRF,FARY) 652 I '$D(ZGRAPH) D Q ; 653 . I $D(DEBUG) W !,"NO TRIPLES IN GRAPH" 654 K C0XFDA 655 N ZI S ZI="" 656 F S ZI=$O(ZGRAPH(ZI)) Q:ZI="" D ; 657 . S C0XFDA(C0XTFN,ZI_",",.01)="@" 658 D UPDIE(.C0XFDA) 659 Q 660 ; 661 TING(ZRTN,ZGRF,FARY) ; return the iens for graph ZGRF 662 ; ZRTN is passed by reference 663 I '$D(FARY) D ; 664 . D INITFARY("C0XFARY") 665 . S FARY="C0XFARY" 666 D USEFARY(FARY) 667 K ZRTN 668 N ZI,ZG S ZI="" 669 S ZG=$$IENOF^C0XGET1(ZGRF) 670 I ZG="" D Q ; 671 . I $D(DEBUG) W !,"ERROR GRAPH NOT FOUND" 672 I '$D(@C0XTN@("G",ZG)) Q ; 673 F S ZI=$O(@C0XTN@("G",ZG,ZI)) Q:ZI="" D ; 674 . S ZRTN(ZI)="" 675 Q 676 ; 677 SWUPDIE(ZFDA) ; SWITCH BETWEEN UPDIE AND BULKLOAD 678 I $G(BLKLOAD)=1 D ; bulk load 679 . D BULKLOAD(.ZFDA) ; bulk load the batch 680 E D ; no bulk load 681 . D UPDIE(.ZFDA) 682 K ZFDA 683 Q 684 ; 685 UPDIE(ZFDA) ; INTERNAL ROUTINE TO CALL UPDATE^DIE AND CHECK FOR ERRORS 686 ; ZFDA IS PASSED BY REFERENCE 687 ;ZWR ZFDA 688 ;B 689 K ZERR 690 D CLEAN^DILF 691 D UPDATE^DIE("","ZFDA","","ZERR") 692 I $D(ZERR) S ZZERR=ZZERR ; ZZERR DOESN'T EXIST, 693 ; INVOKE THE ERROR TRAP IF TASKED 694 ;. W "ERROR",! 695 ;. ZWR ZERR 696 ;. B 697 K ZFDA 698 Q 699 ; -
fmts/trunk/p/C0XUTIL.m
r1539 r1628 66 66 S C0XVOC("sage")="http://oro.com/sage/schema#" 67 67 S C0XVOC("v")="http://www.w3.org/2006/vcard/ns#" 68 S C0XVOC("cadrug")="http://drugbank.ca" 69 S C0XVOC("xmlns")="http://www.w3.org/" 70 S C0XVOC("xs")="http://www.w3.org/xs#" 68 71 Q 69 72 ;
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