Index: /ccr/trunk/rxnorm/trunk/routines/C0CRXNAD.m =================================================================== --- /ccr/trunk/rxnorm/trunk/routines/C0CRXNAD.m (revision 1629) +++ /ccr/trunk/rxnorm/trunk/routines/C0CRXNAD.m (revision 1630) @@ -1,132 +1,132 @@ -C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM - ;;1.0;RX NORM;;Apr 25, 2012;Build 99 - ; (C) 2013 Sam Habiel - ; Proprietary Code. Don't use if license terms aren't supplied. - ; -ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File - ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required. - ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes. - ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters. - ; Output: Internal Entry Number - ; - ; Prelim Checks - I '$G(RXN) S $EC=",U1," ; Required - I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1," - ; - N PSSZ S PSSZ=1 ; Needed for the drug file to let me in! - ; - ; If RXN refers to a brand drug, get the generic instead. - I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN) - W !,"(debug) RxNorm is "_RXN,! - ; - ; Get first VUID for this RxNorm drug - N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN) - Q:'VUID - W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,! - ; - ; IEN in 50.68 - N C0XVUID ; For Searching Compound Index - S C0XVUID(1)=VUID - S C0XVUID(2)=1 - N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID") - Q:'F5068IEN - W "F 50.68 IEN (debug): "_F5068IEN,! - ; - ; FDA Array - N C0XFDA - ; - ; Name, shortened - S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40) - ; - ; File BarCode as a Synonym for BCMA - I $L($G(BARCODE)) D - . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE - . S C0XFDA(50.1,"+2,+1,",1)="Q" - ; - ; Brand Names - N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands - I $L(BNS) N I F I=1:1:$L(BNS,U) D - . N IENS S IENS=I+2 - . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40)) - . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T" - ; - ; NDC (string) - I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11) - ; - ; Dispense Unit (string) - S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT") - ; - ; National Drug File Entry (pointer to 50.6) - S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I") - ; - ; VA Product Name (string) - S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70) - ; - ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68) - S C0XFDA(50,"+1,",22)="`"_F5068IEN - ; - ; DEA, SPECIAL HDLG (string) - D ; From ^PSNMRG - . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I") - . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS) - . S C0XFDA(50,"+1,",3)=CS - ; - ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field) - S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I") - ; - ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them) - ; - Package Size (derived from NDC/UPN file) - ; - Package Type (ditto) - ; - CMOP ID (from $$PROD2^PSNAPIS) - ; - National Formulary Indicator (from 50.68) - ; - ; Next Step is to kill Old OI if Dosage Form doesn't match - ; Won't do that here as it's assumed any drugs that's added is new. - ; This happens at ^PSNPSS - ; - ; Now add drug to drug file, as we need the IEN for the dosages call. - N C0XERR,C0XIEN - D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR") - S:$D(C0XERR) $EC=",U1," - ; - ; Next Step: Kill off old doses and add new ones. - D EN2^PSSUTIL(C0XIEN(1)) - ; - ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU - N PSIUDA,PSIUX ; Expected Input variables - S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU - S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU - S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU - ; - ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information - N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer - N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name - N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer - N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text - N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto - N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto - ; - ; Get the (possibly new) Orderable Item Text - N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field - ; - ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file. - N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,"")) - ; - ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN) - I 'OI D - . N C0XFDA,C0XERR - . S C0XFDA(50.7,"+1,",.01)=VAG40 - . S C0XFDA(50.7,"+1,",.02)=DOSEPTR - . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR)) - . I $D(C0XERR) S $EC=",U1," - . S OI=OI(1) ; For ease of use... - . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE. - . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc. - . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS - ; - ; Finally, add the orderable Item to the drug file. - N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item - D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR)) - S:$D(C0XERR) $EC=",U1," - ; -EX QUIT C0XIEN(1) +C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM + ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 + ; (C) 2013 Sam Habiel + ; Proprietary Code. Don't use if license terms aren't supplied. + ; +ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File + ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required. + ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes. + ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters. + ; Output: Internal Entry Number + ; + ; Prelim Checks + I '$G(RXN) S $EC=",U1," ; Required + I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1," + ; + N PSSZ S PSSZ=1 ; Needed for the drug file to let me in! + ; + ; If RXN refers to a brand drug, get the generic instead. + I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN) + W !,"(debug) RxNorm is "_RXN,! + ; + ; Get first VUID for this RxNorm drug + N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN) + Q:'VUID + W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,! + ; + ; IEN in 50.68 + N C0XVUID ; For Searching Compound Index + S C0XVUID(1)=VUID + S C0XVUID(2)=1 + N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID") + Q:'F5068IEN + W "F 50.68 IEN (debug): "_F5068IEN,! + ; + ; FDA Array + N C0XFDA + ; + ; Name, shortened + S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40) + ; + ; File BarCode as a Synonym for BCMA + I $L($G(BARCODE)) D + . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE + . S C0XFDA(50.1,"+2,+1,",1)="Q" + ; + ; Brand Names + N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands + I $L(BNS) N I F I=1:1:$L(BNS,U) D + . N IENS S IENS=I+2 + . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40)) + . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T" + ; + ; NDC (string) + I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11) + ; + ; Dispense Unit (string) + S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT") + ; + ; National Drug File Entry (pointer to 50.6) + S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I") + ; + ; VA Product Name (string) + S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70) + ; + ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68) + S C0XFDA(50,"+1,",22)="`"_F5068IEN + ; + ; DEA, SPECIAL HDLG (string) + D ; From ^PSNMRG + . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I") + . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS) + . S C0XFDA(50,"+1,",3)=CS + ; + ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field) + S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I") + ; + ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them) + ; - Package Size (derived from NDC/UPN file) + ; - Package Type (ditto) + ; - CMOP ID (from $$PROD2^PSNAPIS) + ; - National Formulary Indicator (from 50.68) + ; + ; Next Step is to kill Old OI if Dosage Form doesn't match + ; Won't do that here as it's assumed any drugs that's added is new. + ; This happens at ^PSNPSS + ; + ; Now add drug to drug file, as we need the IEN for the dosages call. + N C0XERR,C0XIEN + D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR") + S:$D(C0XERR) $EC=",U1," + ; + ; Next Step: Kill off old doses and add new ones. + D EN2^PSSUTIL(C0XIEN(1)) + ; + ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU + N PSIUDA,PSIUX ; Expected Input variables + S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU + S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU + S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU + ; + ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information + N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer + N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name + N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer + N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text + N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto + N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto + ; + ; Get the (possibly new) Orderable Item Text + N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field + ; + ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file. + N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,"")) + ; + ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN) + I 'OI D + . N C0XFDA,C0XERR + . S C0XFDA(50.7,"+1,",.01)=VAG40 + . S C0XFDA(50.7,"+1,",.02)=DOSEPTR + . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR)) + . I $D(C0XERR) S $EC=",U1," + . S OI=OI(1) ; For ease of use... + . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE. + . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc. + . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS + ; + ; Finally, add the orderable Item to the drug file. + N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item + D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR)) + S:$D(C0XERR) $EC=",U1," + ; +EX QUIT C0XIEN(1) Index: /ccr/trunk/rxnorm/trunk/routines/C0CRXNLK.m =================================================================== --- /ccr/trunk/rxnorm/trunk/routines/C0CRXNLK.m (revision 1629) +++ /ccr/trunk/rxnorm/trunk/routines/C0CRXNLK.m (revision 1630) @@ -1,4 +1,4 @@ -C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-04-10 7:01 PM - ;;1.0;RX NORM;;Apr 25, 2012;Build 99 +C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-11-14 2:43 PM + ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 ;(c) Sam Habiel 2013 ; See accompanying license. Don't use otherwise. @@ -10,5 +10,5 @@ QUIT ; -EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist? +EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist? ; Input: RxNorm CUI by value ; Output: Extrinsic @@ -22,5 +22,6 @@ Q ^(IEN) ; -GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN +GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN + Q:'$D(^C0CRXN(176.001,"STC","NDDF")) N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<>" Q:LN="" D . N GCN S GCN=$P(LN,";",3) @@ -29,5 +30,5 @@ QUIT ; -GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI +GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI ;;16033;991632 ;;8208;310429 @@ -35,4 +36,32 @@ ;;18;197604 ;;346;884173 + ;;<> + ; + ; + ; +RXN2GCN(RXNCUI) ; $$ Public - Get GCN(s) given an RxNorm Number + ; Input: RXNCUI by Value + ; Output: Caret delimited Extrinsic + N GCNS S GCNS="" + N I S I="" + F S I=$O(^C0CRXN(176.001,"STX","NDDF","CDC",RXNCUI,I)) Q:I="" S GCNS=GCNS_+^(I)_U ; + b/c we want the GCN w/o leading zeros + S GCNS=$E(GCNS,1,$L(GCNS)-1) ; remove trailing ^ + Q GCNS + ; +RXN2GCNT ; @TEST - Test Get GCN from RXNCUI + Q:'$D(^C0CRXN(176.001,"STX","NDDF")) + N L F L=1:1 N LN S LN=$T(RXN2GCND+L) Q:LN["<>" Q:LN="" D + . N RXN S RXN=$P(LN,";",3) + . N GCN S GCN=$P(LN,";",4) + . D CHKEQ^XTMUNIT($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed") + QUIT + ; + ; +RXN2GCND ; @DATA - Data for Tests ;;RXNORM CUI;Expected GCN; Human Readable Drug name for dear reader + ;;998689;5145;Acetabulol 200mg tab + ;;745679;5037;Albuterol Inhaler + ;;197320;2536;Allopurinol 300mg tab + ;;993691;3948^46236;Bupropion 75mg tab + ;;197591;3768;Diazepam 5mg tab ;;<> ; @@ -50,5 +79,5 @@ Q C0PVUID ; -RXN2VUIT ; @TEST - Get VUIDs given RxNorm values +RXN2VUIT ; @TEST - Get VUIDs given RxNorm values N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<>" Q:LN="" D . N RXN S RXN=$P(LN,";",3) @@ -57,5 +86,5 @@ QUIT ; -RXN2VUID ; @DATA - Data items for previous test +RXN2VUID ; @DATA - Data items for previous test ;;991632;4006455 ;;310429;4002369^4013941 @@ -76,5 +105,5 @@ Q O ; -VUI2VAPT ; @TEST - Get VA Product IEN from VUID +VUI2VAPT ; @TEST - Get VA Product IEN from VUID N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<>" Q:LN="" D . N VUID S VUID=$P(LN,";",3) @@ -83,5 +112,5 @@ QUIT ; -VUI2VAPD ; @DATA - Data for above test +VUI2VAPD ; @DATA - Data for above test ;;4006455;5932 ;;4002369;1784 @@ -112,5 +141,5 @@ ; ; -RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50. +RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50. ; Input: SCD RXNCUI ; Output; Caret delimited extrinsic @@ -123,5 +152,5 @@ . N VUID S VUID=$P(VUIDS,U,I) . N VAPRODS S VAPRODS=$$VUI2VAP(VUID) ; Get VA Product from VUID (multiple products per VUID) - . I '$L(VAPRODS) S ^SAM(RXNCUI)="TELL SAM",DONE=1 QUIT ; MUST EXIST. Every VUID must have a product to go with it. + . I '$L(VAPRODS) S $ECODE=",U-NO-VA-PRODUCT-CORRUPT-NDF," ; MUST EXIST. Every VUID must have a product to go with it. . N J F J=1:1:$L(VAPRODS,U) D Q:DONE . . N VAPROD S VAPROD=$P(VAPRODS,U,J) @@ -138,4 +167,5 @@ ; FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base + Q:'$D(^C0CRXN(176.001,"STC","NDDF")) D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed") QUIT @@ -162,5 +192,5 @@ Q C0PIEN_"^"_C0P01 ; -VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient +VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed") QUIT @@ -202,5 +232,15 @@ QUIT RXNS ; -MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug +VUI2GCN(VUID) ; $$ Public - Get GCNs for a given VUID (any VUID type) + ; Input: VUID by Value + ; Output: GCNs delimited by ^ + ; TODO: Unit Test + N RXNS S RXNS=$$VUI2RXN(VUID) + N GCNS S GCNS="" + N I F I=1:1:$L(RXNS,U) S GCNS=GCNS_$$RXN2GCN($P(RXNS,U,I))_U + S GCNS=$E(GCNS,1,$L(GCNS)-1) + QUIT GCNS + ; +MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug ; Input: DA - Medication IEN ; Output: RXNCUIs delimited by ^ @@ -212,5 +252,5 @@ Q $$VUI2RXN(VUID) ; -MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name +MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name ; Input: DA - Medication IEN ; Output: The Canonical Semantic Clinical Drug name @@ -239,5 +279,5 @@ ; --- ; -NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC +NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC ; NB: Will only work if passed NDC is in 5-4-2 format. ; Input: NDC By Value in 5-4-2 Format @@ -246,5 +286,5 @@ N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN) ; -NDC2RXNT ; @TEST - Test Get RxCUI given the NDC +NDC2RXNT ; @TEST - Test Get RxCUI given the NDC D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed") QUIT @@ -252,9 +292,9 @@ ; --- ; -ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug? +ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug? ; Input: RxCUI ; Output: 0 or 1 Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN)) -ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug? +ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug? D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine @@ -263,9 +303,9 @@ ; --- ; -BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1) +BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1) ; Input: RxCUI of Brand ; Output: RxCUI of Generic Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename","")) -BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1) +BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1) D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed") QUIT @@ -273,5 +313,5 @@ ; --- ; -GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many). +GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many). N RTN S RTN="" ; Return N I S I="" F S I=$O(^C0CRXN(176.005,"B",RXN,"tradename_of",I)) Q:'I S RTN=RTN_I_U @@ -279,5 +319,5 @@ Q RTN ; -GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many). +GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many). D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed") QUIT @@ -285,5 +325,5 @@ ; --- ; -RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN +RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN N BNS S BNS="" I $$ISBRAND(RXN) S RXN=$$BR2GEN(RXN) @@ -297,5 +337,16 @@ . S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U QUIT $E(BNS,1,$L(BNS)-1) -RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN +RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed") QUIT + ; + ; --- + ; +RXN2NDC(RXN) ; Get NDC codes for RxNorm code + N NDCS S NDCS="" + N I F I=0:0 S I=$O(^C0CRXN(176.002,"ASAR","RXNORM","NDC",RXN,I)) Q:'I S NDCS=NDCS_^(I)_"^" + S $E(NDCS,$L(NDCS))="" + QUIT NDCS +RXN2NDCT ; @TEST - Test Get NDC codes for RxNorm code + D CHKTF^XTMUNIT($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed") + QUIT Index: /ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m =================================================================== --- /ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m (revision 1629) +++ /ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m (revision 1630) @@ -1,13 +1,17 @@ -C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-03-06 4:32 PM - ;;2.0;RX NORM;;May 11, 2012;Build 50 +C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM + ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 ; (C) Sam Habiel 2013 ; See license for terms of use. ; W "No entry from top" Q -IMPORT(PATH) ; PUBLIC ENTRY POINT. Rest are private +IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private I PATH="" QUIT + S RESTRICTED=$G(RESTRICTED,0) S U="^" N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2) - D SAB(PATH),CONSO(PATH),SAT(PATH),STY(PATH),REL(PATH),DOC(PATH) + N SABS + D SAB(PATH,.SABS) ; Load restriction values into SAB. ; 176.006 + D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002 + D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5 N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2) W !,(ENDTIME-STARTTIME)/60_" minutes elapsed" @@ -25,5 +29,7 @@ QUIT GETLINES(PATH,FILENAME) ; Get number of lines in a file + N POP D OPEN^%ZISH("FILE",PATH,FILENAME,"R") + Q:POP U IO N I,LINE @@ -31,9 +37,9 @@ D CLOSE^%ZISH("FILE") Q I-1 -CONSO(PATH,INCRES) ; Open and read concepts file: RXNCONSO.RRF +CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF ; PATH ByVal, path of RxNorm files - ; INCRES ByVal, include restricted sources. 1 for yes, 0 for no + ; SABS ByRef, arrays of SABS(SAB)=restriction level + ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no I PATH="" QUIT - S INCRES=+$G(INCRES) ; if not passed, becomes zero. N FILENAME S FILENAME="RXNCONSO.RRF" D DELFILED(176.001) ; delete data @@ -48,12 +54,11 @@ . IF $$STATUS^%ZISH QUIT . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 + . ; + . ; Deal with restriction level + . N SAB S SAB=$P(LINE,"|",12) + . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit + . ; + . ; Save data . S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|") - . ; TODO Implement Filtering: - . ; If the source is a restricted source, decide what to do based on what's asked. - . ; N SRCIEN S SRCIEN=$$FIND1^DIC(176.003,"","QX",SAB,"B") ; SrcIEN in RXNORM SOURCES file - . ; N RESTRIC S RESTRIC=$$GET1^DIQ(176.003,SRCIEN,14,"I") ; 14 is restriction field; values 0-4 - . ; If RESTRIC is zero, then it's unrestricted. Everything else is restricted. - . ; If user didn't ask to include restricted sources, and the source is restricted, then quit - . ; I 'INCRES,RESTRIC QUIT EX D CLOSE^%ZISH("FILE") N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK @@ -61,5 +66,8 @@ ; ; -SAT(PATH) ; Open and read Concept and Atom attributes: RXNSAT.RRF +SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF + ; PATH ByVal, path of RxNorm files + ; SABS ByRef, arrays of SABS(SAB)=restriction level + ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no I PATH="" QUIT N FILENAME S FILENAME="RXNSAT.RRF" @@ -82,4 +90,8 @@ . S $P(LINE,"|",9)=RXCUI1 . ; + . ; Deal with restricted sources + . N SAB S SAB=$P(LINE,"|",10) + . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit + . ; . ; Save off . S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|") @@ -89,5 +101,5 @@ ; ; -SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF +SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF I PATH="" QUIT N FILENAME S FILENAME="RXNSAB.RRF" @@ -109,4 +121,6 @@ EX3 D CLOSE^%ZISH("FILE") N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK + N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D + . S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL") QUIT STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF