Index: ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m
===================================================================
--- ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m	(revision 1642)
+++ ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m	(revision 1730)
@@ -1,182 +1,210 @@
-C0CRXNRD	; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14  1:23 PM
-	;;2.3;RXNORM FOR VISTA;;Jul 22, 2014;Build 10
-	; (C) Sam Habiel 2013
-	; See license for terms of use.
-	;
-	W "No entry from top" Q
-IMPORT(PATH,RESTRICTED)	; PUBLIC ENTRY POINT. Rest are private
-	I PATH="" QUIT
-	S RESTRICTED=$G(RESTRICTED,0)
-	S U="^"
-	N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
-	N SABS
-	D SAB(PATH,.SABS) ; Load restriction values into SAB.     ; 176.006
-	D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002
-	D STY(PATH),REL(PATH),DOC(PATH)                           ; 176.003-5
-	N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
-	W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
-	QUIT
-	;
-	; Everything is private from down on...
-DELFILED(FN)	; Delete file data; PEP procedure; only for RxNorm files
-	; FN is Filenumber passed by Value
-	QUIT:$E(FN,1,3)'=176  ; Quit if not RxNorm files
-	N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root
-	N ZERO S ZERO=@ROOT@(0) ; Save zero node
-	S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited
-	K @ROOT ; Kill the file -- so sad!
-	S @ROOT@(0)=ZERO ; It riseth again!
-	QUIT
-GETLINES(PATH,FILENAME)	; Get number of lines in a file
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	Q:POP
-	U IO
-	N I,LINE
-	F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
-	D CLOSE^%ZISH("FILE")
-	Q I-1
-CONSO(PATH,SABS,RESTRICTED)	; Open and read concepts file: RXNCONSO.RRF
-	; PATH ByVal, path of RxNorm files
-	; SABS ByRef, arrays of SABS(SAB)=restriction level
-	; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNCONSO.RRF"
-	D DELFILED(176.001) ; delete data
-	N LINES S LINES=$$GETLINES(PATH,FILENAME)
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
-	N C0CCOUNT
-	F C0CCOUNT=1:1 D  Q:$$STATUS^%ZISH
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
-	. ;
-	. ; Deal with restriction level
-	. N SAB S SAB=$P(LINE,"|",12)
-	. I 'RESTRICTED,SABS(SAB) QUIT  ; If not include restricted, and SABS(SAB) is not zero, quit
-	. ;
-	. ; Save data
-	. S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
-EX	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
-	QUIT
-	;
-	;
-SAT(PATH,SABS,RESTRICTED)	; Open and read Concept and Atom attributes: RXNSAT.RRF
-	; PATH ByVal, path of RxNorm files
-	; SABS ByRef, arrays of SABS(SAB)=restriction level
-	; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNSAT.RRF"
-	D DELFILED(176.002) ; delete data
-	N LINES S LINES=$$GETLINES(PATH,FILENAME)
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP W "Error reading file..., Please check...",! G EX2
-	N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH  D
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
-	. ;
-	. ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
-	. N RXCUI1,ATN9
-	. S RXCUI1=$P(LINE,"|",1)
-	. S ATN9=$P(LINE,"|",9)
-	. S $P(LINE,"|",1)=ATN9
-	. S $P(LINE,"|",9)=RXCUI1
-	. ;
-	. ; Deal with restricted sources
-	. N SAB S SAB=$P(LINE,"|",10)
-	. I 'RESTRICTED,SABS(SAB) QUIT  ; If not include restricted, and SABS(SAB) is not zero, quit
-	. ;
-	. ; Save off
-	. S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
-EX2	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
-	QUIT
-	;
-	;
-SAB(PATH,SABS)	; Open the read RxNorm Sources file: RXNSAB.RRF
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNSAB.RRF"
-	D DELFILED(176.003) ; delete data
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP W "Error reading file..., Please check...",! G EX3
-	N I F I=1:1 Q:$$STATUS^%ZISH  D
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. U $P W I,! U IO  ; Write I to the screen, then go back to reading the file
-	. ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field.
-	. N VCUI S VCUI=$P(LINE,"|",1)
-	. N RSAB S RSAB=$P(LINE,"|",4)
-	. S $P(LINE,"|",1)=RSAB
-	. S $P(LINE,"|",4)=VCUI
-	. S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
-EX3	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
-	N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI  D
-	. S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
-	QUIT
-STY(PATH)	; Open and read RxNorm Semantic types file: RXNSTY.RRF
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNSTY.RRF"
-	D DELFILED(176.004) ; delete data
-	N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP W "Error reading file..., Please check...",! G EX4
-	N I F I=1:1 Q:$$STATUS^%ZISH  D
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
-	. S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^")
-EX4	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK
-	QUIT
-	;
-REL(PATH)	; Open and read RxNorm Relationships file: RXNREL.RRF
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNREL.RRF"
-	D DELFILED(176.005) ; delete data
-	N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP W "Error reading file..., Please check...",! G EX5
-	N I F I=1:1 Q:$$STATUS^%ZISH  D
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
-	. ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
-	. N RXCUI1 S RXCUI1=$P(LINE,"|",1)
-	. N SAB S SAB=$P(LINE,"|",11)
-	. S $P(LINE,"|",1)=SAB
-	. S $P(LINE,"|",11)=RXCUI1
-	. S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
-EX5	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
-	QUIT
-DOC(PATH)	; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
-	I PATH="" QUIT
-	N FILENAME S FILENAME="RXNDOC.RRF"
-	D DELFILED(176.006) ; delete data
-	N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
-	N POP
-	D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
-	IF POP W "Error reading file..., Please check...",! G EX6
-	N I F I=1:1 Q:$$STATUS^%ZISH  D
-	. U IO
-	. N LINE R LINE:0
-	. IF $$STATUS^%ZISH QUIT
-	. I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
-	. S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^")
-EX6	D CLOSE^%ZISH("FILE")
-	N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK
-	QUIT
+C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14  1:23 PM
+ ;;2.5;RXNORM FOR VISTA;;Apr 27, 2016;Build 10
+ ; (C) Sam Habiel 2016
+ ; See license for terms of use.
+ ;
+ W "No entry from top" Q
+IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private
+ I PATH="" QUIT
+ S RESTRICTED=$G(RESTRICTED,0)
+ S U="^"
+ N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2)
+ D SAB(PATH) ; Load restriction values into SAB.     ; 176.006
+ JOB SAT^C0CRXNRD(PATH,RESTRICTED)  ; 176.002
+ W "Jobbed off... "_$ZJOB_"."
+ D CONSO(PATH,RESTRICTED) ; 176.001,176.002
+ D STY(PATH),REL(PATH),DOC(PATH)                           ; 176.003-5
+ N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2)
+ W !,(ENDTIME-STARTTIME)/60_" minutes elapsed"
+ QUIT
+ ;
+ ; Everything is private from down on...
+DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files
+ ; FN is Filenumber passed by Value
+ QUIT:$E(FN,1,3)'=176  ; Quit if not RxNorm files
+ N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root
+ N ZERO S ZERO=@ROOT@(0) ; Save zero node
+ S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited
+ K @ROOT ; Kill the file -- so sad!
+ S @ROOT@(0)=ZERO ; It riseth again!
+ QUIT
+GETLINES(PATH,FILENAME) ; Get number of lines in a file
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ Q:POP
+ U IO
+ N I,LINE
+ F I=1:1 R LINE:0 Q:$$STATUS^%ZISH
+ D CLOSE^%ZISH("FILE")
+ Q I-1
+CONSO(PATH,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF
+ ; PATH ByVal, path of RxNorm files
+ ; SABS ByRef, arrays of SABS(SAB)=restriction level
+ ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
+ N SABS D LOADSABS(.SABS)
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNCONSO.RRF"
+ D DELFILED(176.001) ; delete data
+ N LINES S LINES=$$GETLINES(PATH,FILENAME)
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP D EN^DDIOL("Error reading file..., Please check...") G EX
+ N C0CCOUNT
+ N C0CSUPP S C0CSUPP=0
+ F C0CCOUNT=1:1 D  Q:$$STATUS^%ZISH
+ . U IO
+ . N LINE R LINE:0
+ . IF $$STATUS^%ZISH QUIT
+ . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
+ . ;
+ . ; If suppressed, quit
+ . N SUPP S SUPP=$P(LINE,"|",17)
+ . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
+ . ;
+ . ; Deal with restriction level
+ . N SAB S SAB=$P(LINE,"|",12)
+ . I 'RESTRICTED,SABS(SAB) QUIT  ; If not include restricted, and SABS(SAB) is not zero, quit
+ . ;
+ . ; Save data
+ . S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|")
+EX D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK
+ W "Suppressed: ",C0CSUPP,!
+ QUIT
+ ;
+ ;
+SAT(PATH,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF
+ ; PATH ByVal, path of RxNorm files
+ ; SABS ByRef, arrays of SABS(SAB)=restriction level
+ ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no
+ N $ET S $ET="D ^%ZTER HALT"
+ S U="^"
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNSAT.RRF"
+ D DELFILED(176.002) ; delete data
+ N LINES S LINES=$$GETLINES(PATH,FILENAME)
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP W "Error reading file..., Please check...",! G EX2
+ N SABS D LOADSABS(.SABS)
+ N C0CSUPP S C0CSUPP=0
+ N C0CCOUNT F C0CCOUNT=1:1 Q:$$STATUS^%ZISH  D
+ . U IO
+ . N LINE R LINE:0
+ . IF $$STATUS^%ZISH QUIT
+ . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000
+ . ;
+ . ; If suppressed, quit
+ . N SUPP S SUPP=$P(LINE,"|",12)
+ . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
+ . ;
+ . ; We switch around the fields .01 and .09 because the .01 isn't always present; where as .09 is required
+ . N RXCUI1,ATN9
+ . S RXCUI1=$P(LINE,"|",1)
+ . S ATN9=$P(LINE,"|",9)
+ . S $P(LINE,"|",1)=ATN9
+ . S $P(LINE,"|",9)=RXCUI1
+ . ;
+ . ; Deal with restricted sources
+ . N SAB S SAB=$P(LINE,"|",10)
+ . I 'RESTRICTED,SABS(SAB) QUIT  ; If not include restricted, and SABS(SAB) is not zero, quit
+ . ;
+ . ; Save off
+ . S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|")
+EX2 D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.002," D IXALL^DIK
+ W "Suppressed: ",C0CSUPP,!
+ QUIT
+ ;
+ ;
+SAB(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNSAB.RRF"
+ D DELFILED(176.003) ; delete data
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP W "Error reading file..., Please check...",! G EX3
+ N I F I=1:1 Q:$$STATUS^%ZISH  D
+ . U IO
+ . N LINE R LINE:0
+ . IF $$STATUS^%ZISH QUIT
+ . U $P W I,! U IO  ; Write I to the screen, then go back to reading the file
+ . ; Switch pieces 1 and 4 because 4 is always defined. Goes into .01 field.
+ . N VCUI S VCUI=$P(LINE,"|",1)
+ . N RSAB S RSAB=$P(LINE,"|",4)
+ . S $P(LINE,"|",1)=RSAB
+ . S $P(LINE,"|",4)=VCUI
+ . S ^C0CRXN(176.003,I,0)=$TR(LINE,"^|","|^")
+EX3 D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK
+ QUIT
+ ;
+LOADSABS(SABS) ;
+ N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI  D
+ . S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL")
+ QUIT
+ ;
+STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNSTY.RRF"
+ D DELFILED(176.004) ; delete data
+ N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP W "Error reading file..., Please check...",! G EX4
+ N I F I=1:1 Q:$$STATUS^%ZISH  D
+ . U IO
+ . N LINE R LINE:0
+ . IF $$STATUS^%ZISH QUIT
+ . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
+ . S ^C0CRXN(176.004,I,0)=$TR(LINE,"^|","|^")
+EX4 D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.004," D IXALL^DIK
+ QUIT
+ ;
+REL(PATH) ; Open and read RxNorm Relationships file: RXNREL.RRF
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNREL.RRF"
+ D DELFILED(176.005) ; delete data
+ N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP W "Error reading file..., Please check...",! G EX5
+ N C0CSUPP S C0CSUPP=0
+ N I F I=1:1 Q:$$STATUS^%ZISH  D
+ . U IO
+ . N LINE R LINE:0
+ . ;
+ . ; If suppressed, quit
+ . N SUPP S SUPP=$P(LINE,"|",15)
+ . I SUPP="O"!(SUPP="Y")!(SUPP="E") S C0CSUPP=C0CSUPP+1 QUIT
+ . ;
+ . IF $$STATUS^%ZISH QUIT
+ . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
+ . ; swap RXCUI1 location with SAB b/c SAB is required so can be .01 field
+ . N RXCUI1 S RXCUI1=$P(LINE,"|",1)
+ . N SAB S SAB=$P(LINE,"|",11)
+ . S $P(LINE,"|",1)=SAB
+ . S $P(LINE,"|",11)=RXCUI1
+ . S ^C0CRXN(176.005,I,0)=$TR(LINE,"^|","|^")
+EX5 D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.005," D IXALL^DIK
+ W "Suppressed: ",C0CSUPP,!
+ QUIT
+DOC(PATH) ; Open the read RxNorm Abbreviation Documentation file: RXNDOC.RRF
+ I PATH="" QUIT
+ N FILENAME S FILENAME="RXNDOC.RRF"
+ D DELFILED(176.006) ; delete data
+ N LINES S LINES=$$GETLINES(PATH,FILENAME) ; Get # of lines
+ N POP
+ D OPEN^%ZISH("FILE",PATH,FILENAME,"R")
+ IF POP W "Error reading file..., Please check...",! G EX6
+ N I F I=1:1 Q:$$STATUS^%ZISH  D
+ . U IO
+ . N LINE R LINE:0
+ . IF $$STATUS^%ZISH QUIT
+ . I '(I#1000) U $P W I," of ",LINES," read ",! U IO ; update every 1000
+ . S ^C0CRXN(176.006,I,0)=$TR(LINE,"^|","|^")
+EX6 D CLOSE^%ZISH("FILE")
+ N DIK S DIK="^C0CRXN(176.006," D IXALL^DIK
+ QUIT
