Changeset 1332 for ccr/branches/ohum/p/C0CSNOA.m
- Timestamp:
- Jan 4, 2012, 12:05:03 AM (13 years ago)
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- 1 edited
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ccr/branches/ohum/p/C0CSNOA.m (modified) (1 diff)
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ccr/branches/ohum/p/C0CSNOA.m
r1330 r1332 1 C0CSNOA 2 ;;0.1;CCDCCR;nopatch;noreleasedate;Build 1 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 ANALYZE(BEGIEN,IENCNT) 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 TEXTRPC(ORTN,ITEXT) 66 67 68 69 70 71 72 ASETUP 73 74 75 76 77 78 79 80 AINIT 81 82 83 84 85 86 87 88 89 APOST(PRSLT,PTBL,PVAL) 90 91 92 93 94 95 96 97 98 99 100 SETATTR(SDFN) 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 RESET 124 125 126 127 128 CLIST 129 130 131 132 133 134 135 136 137 138 139 140 141 142 CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 REUSE 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 1 C0CSNOA ; CCDCCR/GPL - SNOMED CT ANALYSIS ROUTINES; 10/14/08 2 ;;0.1;CCDCCR;nopatch;noreleasedate 3 ;Copyright 2008,2009 George Lilly, University of Minnesota. 4 ;Licensed under the terms of the GNU General Public License. 5 ;See attached copy of the License. 6 ; 7 ;This program is free software; you can redistribute it and/or modify 8 ;it under the terms of the GNU General Public License as published by 9 ;the Free Software Foundation; either version 2 of the License, or 10 ;(at your option) any later version. 11 ; 12 ;This program is distributed in the hope that it will be useful, 13 ;but WITHOUT ANY WARRANTY; without even the implied warranty of 14 ;MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 15 ;GNU General Public License for more details. 16 ; 17 ;You should have received a copy of the GNU General Public License along 18 ;with this program; if not, write to the Free Software Foundation, Inc., 19 ;51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. 20 ; 21 ; THESE ROUTINES ANALYZE THE POTENTIAL RETRIEVAL OF SNOMED CT CODES 22 ; FOR PATIENT DRUG ALLERGIES FOR INCLUSION IN THE CCR OR CCD 23 ; USING THE VISTA LEXICON ^LEX 24 ; 25 ANALYZE(BEGIEN,IENCNT) ; SNOMED RETRIEVAL ANALYSIS ROUTINE 26 ; BEGINS AT BEGIEN AND GOES FOR IENCNT DRUGS IN GMRD 27 ; TO RESUME AT NEXT DRUG, USE BEGIEN="" 28 ; USE RESET^C0CSNOA TO RESET TO TOP OF DRUG LIST 29 ; 30 N SNOARY,SNOTMP,SNOI,SNOIEN,RATTR 31 N CCRGLO 32 D ASETUP ; SET UP VARIABLES AND GLOBALS 33 D AINIT ; INITIALIZE ATTRIBUTE VALUE TABLE 34 I '$D(@SNOBASE@("RESUME")) S @SNOBASE@("RESUME")=$O(@GMRBASE@(1)) ;1ST TME 35 S RESUME=@SNOBASE@("RESUME") ; WHERE WE LEFT OFF LAST RUN 36 S SNOIEN=BEGIEN ; BEGIN WITH THE BEGIEN RECORD 37 I SNOIEN="" S SNOIEN=RESUME 38 I +SNOIEN=0 D Q ; AT THE END OF THE ALLERGY LIST 39 . W "END OF DRUG LIST, CALL RESET^C0CSNOA",! 40 F SNOI=1:1:IENCNT D Q:+SNOIEN=0 ; FOR IENCNT NUMBER OF PATIENTS OR END 41 . ;D CCRRPC^C0CCCR(.CCRGLO,SNOIEN,"CCR","","","") ;PROCESS THE CCR 42 . W SNOIEN,@GMRBASE@(SNOIEN,0),! 43 . N SNORTN,TTERM ; RETURN ARRAY 44 . S TTERM=$P(@GMRBASE@(SNOIEN,0),"^",1)_" ALLERGY" 45 . D TEXTRPC(.SNORTN,TTERM) 46 . I $D(SNORTN) ZWR SNORTN 47 . K @SNOBASE@("VARS",SNOIEN) ; CLEAR OUT OLD VARS 48 . I $P(TTMP,"^",1)=1 S @SNOBASE@("VARS",SNOIEN)=TTERM_"^"_TTMP_"^"_SNORTN(0) 49 . ; 50 . ; EVALUATE THE VARIABLES AND CREATE AN ATTRIBUTE MAP 51 . ; 52 . S RATTR=$$SETATTR(SNOIEN) ; SET THE ATTRIBUTE STRING BASED ON THE VARS 53 . S @SNOBASE@("ATTR",SNOIEN)=RATTR ; SAVE THE ATRIBUTES FOR THIS DRUG 54 . ; 55 . N CATNAME,CATTBL 56 . S CATNAME="" 57 . D CPUSH(.CATNAME,SNOBASE,"SNOTBL",SNOIEN,RATTR) ; ADD TO CATEGORY 58 . ; W "CATEGORY NAME: ",CATNAME,! 59 . ; 60 . S SNOIEN=$O(@GMRBASE@(SNOIEN)) ; NEXT RECORD 61 . S @SNOBASE@("RESUME")=SNOIEN ; WHERE WE ARE LEAVING OFF THIS RUN 62 ; D PARY^C0CXPATH(@SNOBASE@("ATTRTBL")) 63 Q 64 ; 65 TEXTRPC(ORTN,ITEXT) ; CALL THE LEXICON WITH ITEXT AND RETURN RESULTS IN ORTN 66 ; 67 ;N TTMP 68 W ITEXT,! 69 S TTMP=$$TEXT^LEXTRAN(ITEXT,"","","SCT","ORTN") 70 Q 71 ; 72 ASETUP ; SET UP GLOBALS AND VARS SNOBASE AND SNOTBL 73 I '$D(SNOBASE) S SNOBASE=$NA(^TMP("C0CSNO")) 74 I '$D(@SNOBASE) S @SNOBASE="" 75 I '$D(GMRBASE) S GMRBASE=$NA(^GMRD(120.82)) 76 I '$D(SNOTBL) S SNOTBL=$NA(^TMP("C0CSNO","SNOTBL","TABLE")) ; ATTR TABLE 77 S ^TMP("C0CSNO","TABLES","SNOTBL")=SNOTBL ; TABLE OF TABLES 78 Q 79 ; 80 AINIT ; INITIALIZE ATTRIBUTE TABLE 81 I '$D(SNOBASE) D ASETUP ; FOR COMMAND LINE CALLS 82 K @SNOTBL 83 D APUSH^C0CRIMA(SNOTBL,"CODE") 84 D APUSH^C0CRIMA(SNOTBL,"NOCODE") 85 D APUSH^C0CRIMA(SNOTBL,"MULTICODE") 86 D APUSH^C0CRIMA(SNOTBL,"SUBMULTI") 87 D APUSH^C0CRIMA(SNOTBL,"DONE") 88 Q 89 APOST(PRSLT,PTBL,PVAL) ; POST AN ATTRIBUTE PVAL TO PRSLT USING PTBL 90 ; PSRLT AND PTBL ARE PASSED BY NAME. PVAL IS A STRING 91 ; PTBL IS THE NAME OF A TABLE IN @SNOBASE@("TABLES") - "SNOTBL"=ALL VALUES 92 ; PVAL WILL BE PLACED IN THE STRING PRSLT AT $P(X,U,@PTBL@(PVAL)) 93 I '$D(SNOBASE) D ASETUP ; FOR COMMANDLINE PROCESSING 94 N USETBL 95 I '$D(@SNOBASE@("TABLES",PTBL)) D Q ; NO TABLE 96 . W "ERROR NO SUCH TABLE",! 97 S USETBL=@SNOBASE@("TABLES",PTBL) 98 S $P(@PRSLT,U,@USETBL@(PVAL))=PVAL 99 Q 100 SETATTR(SDFN) ; SET ATTRIBUTES BASED ON VARS 101 N SBASE,SATTR 102 S SBASE=$NA(@SNOBASE@("VARS",SDFN)) 103 D APOST("SATTR","SNOTBL","DONE") 104 I $P(TTMP,"^",1)=1 D APOST("SATTR","SNOTBL","CODE") 105 I $P(TTMP,"^",1)=-1 D APOST("SATTR","SNOTBL","NOCODE") 106 Q SATTR ; C0C 107 I $D(@SBASE@("PROBLEMS",1)) D ; 108 . D APOST("SATTR","SNOTBL","PROBLEMS") 109 . ; W "POSTING PROBLEMS",! 110 I $D(@SBASE@("VITALS",1)) D APOST("SATTR","SNOTBL","VITALS") 111 I $D(@SBASE@("MEDS",1)) D ; IF THE PATIENT HAS MEDS VARIABLES 112 . D APOST("SATTR","SNOTBL","MEDS") 113 . N ZR,ZI 114 . D GETPA^C0CRIMA(.ZR,SDFN,"MEDS","MEDPRODUCTNAMECODEVALUE") ;CHECK FOR MED CODES 115 . I ZR(0)>0 D ; VAR LOOKUP WAS GOOD, CHECK FOR NON=NULL RETURN 116 . . F ZI=1:1:ZR(0) D ; LOOP THROUGH RETURNED VAR^VALUE PAIRS 117 . . . I $P(ZR(ZI),"^",2)'="" D APOST("SATTR","SNOTBL","MEDSCODE") ;CODES 118 . ; D PATD^C0CSNOA(2,"MEDS","MEDPRODUCTNAMECODEVALUE") CHECK FOR MED CODES 119 D APOST("SATTR","SNOTBL","NOTEXTRACTED") ; OUTPUT NOT YET PRODUCED 120 ; W "ATTRIBUTES: ",SATTR,! 121 Q SATTR 122 ; 123 RESET ; KILL RESUME INDICATOR TO START OVER. ALSO KILL SNO TMP VALUES 124 K ^TMP("C0CSNO","RESUME") 125 K ^TMP("C0CSNO") 126 Q 127 ; 128 CLIST ; LIST THE CATEGORIES 129 ; 130 I '$D(SNOBASE) D ASETUP ; FOR COMMAND LINE CALLS 131 N CLBASE,CLNUM,ZI,CLIDX 132 S CLBASE=$NA(@SNOBASE@("SNOTBL","CATS")) 133 S CLNUM=@CLBASE@(0) 134 F ZI=1:1:CLNUM D ; LOOP THROUGH THE CATEGORIES 135 . S CLIDX=@CLBASE@(ZI) 136 . W "(",$P(@CLBASE@(CLIDX),"^",1) 137 . W ":",$P(@CLBASE@(CLIDX),"^",2),") " 138 . W CLIDX,! 139 ; D PARY^C0CXPATH(CLBASE) 140 Q 141 ; 142 CPUSH(CATRTN,CBASE,CTBL,CDFN,CATTR) ; ADD PATIENTS TO CATEGORIES 143 ; AND PASS BACK THE NAME OF THE CATEGORY TO WHICH THE PATIENT 144 ; WAS ADDED IN CATRTN, WHICH IS PASSED BY REFERENCE 145 ; CBASE IS WHERE TO PUT THE CATEGORIES PASSED BY NAME 146 ; CTBL IS THE NAME OF THE TABLE USED TO CREATE THE ATTRIBUTES, 147 ; PASSED BY NAME AND USED TO CREATE CATEGORY NAMES IE "@CTBL_X" 148 ; WHERE X IS THE CATEGORY NUMBER. CTBL(0) IS THE NUMBER OF CATEGORIES 149 ; CATBL(X)=CATTR STORES THE ATTRIBUTE IN THE CATEGORY 150 ; CDFN IS THE PATIENT DFN, CATTR IS THE ATTRIBUTE STRING 151 ; THE LIST OF PATIENTS IN A CATEGORY IS STORED INDEXED BY CATEGORY 152 ; NUMBER IE CTBL_X(CDFN)="" 153 ; 154 ; N CCTBL,CENTRY,CNUM,CCOUNT,CPATLIST 155 S CCTBL=$NA(@CBASE@(CTBL,"CATS")) 156 ; W "CBASE: ",CCTBL,! 157 ; 158 I '$D(@CCTBL@(CATTR)) D ; FIRST PATIENT IN THIS CATEGORY 159 . D PUSH^C0CXPATH(CCTBL,CATTR) ; ADD THE CATEGORY TO THE ARRAY 160 . S CNUM=@CCTBL@(0) ; ARRAY ENTRY NUMBER FOR THIS CATEGORY 161 . S CENTRY=CTBL_"_"_CNUM_U_0 ; TABLE ENTRY DEFAULT 162 . S @CCTBL@(CATTR)=CENTRY ; DEFAULT NON INCREMENTED TABLE ENTRY 163 . ; NOTE THAT P1 IS THE CATEGORY NAME MADE UP OF THE TABLE NAME 164 . ; AND CATGORY ARRAY NUMBER. P2 IS THE COUNT WHICH IS INITIALLY 0 165 ; 166 S CCOUNT=$P(@CCTBL@(CATTR),U,2) ; COUNT OF PATIENTS IN THIS CATEGORY 167 S CCOUNT=CCOUNT+1 ; INCREMENT THE COUNT 168 S $P(@CCTBL@(CATTR),U,2)=CCOUNT ; PUT IT BACK 169 ; 170 S CATRTN=$P(@CCTBL@(CATTR),U,1) ; THE CATEGORY NAME WHICH IS RETURNED 171 ; 172 S CPATLIST=$NA(@CBASE@(CTBL,"IENS",CATRTN)) ; BASE OF PAT LIST FOR THIS CAT 173 ; W "IENS BASE: ",CPATLIST,! 174 S @CPATLIST@(CDFN)="" ; ADD THIS PATIENT TO THE CAT PAT LIST 175 ; 176 Q 177 ; 178 REUSE ; GET SAVED VALUES FROM ^TMP("C0CSAV") AND PUT THEM IN A DATABASE 179 ; 180 D ASETUP 181 D AINIT 182 N SNOI,SNOJ,SNOK,SNOSNO,SNOSEC,SNOIEN,SNOOLD,SNOSRCH 183 S SAVBASE=$NA(^TMP("C0CSAV","VARS")) 184 S SNOI="" 185 F D Q:$O(@SAVBASE@(SNOI))="" ;THE WHOLE LIST 186 . S SNOI=$O(@SAVBASE@(SNOI)) 187 . S SNOJ=@SAVBASE@(SNOI) 188 . S SNOK=$P($P(SNOJ,"^",1)," ALLERGY",1) 189 . S SNOSRCH=$P(SNOJ,"^",1) ;SEARCH TERM USED TO OBTAIN SNOMED CODE 190 . S SNOIEN=$P(SNOJ,"^",3) ; IEN OF ELEMENT IN LEXICON 191 . S SNOSNO=$P(SNOJ,"^",4) ; SNOMED CODE 192 . S SNOSEC=$P(SNOJ,"^",5) ; SECTION OF SNOMED FOR THIS CODE 193 . S SNOOLD=$P(SNOJ,"^",7) ; OLD NUMBER FOR THIS CODE 194 . W "SEARCH:",SNOSRCH," IEN:",SNOIEN," CODE:",SNOSNO," SEC:",SNOSEC," OLD:",SNOOLD,! 195 . W SNOK,! 196 . W SNOJ,! 197 Q 198 ;
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