Changeset 1428 for ccr/branches/ohum/p/C0CRXNRD.m
- Timestamp:
- May 11, 2012, 6:06:25 PM (13 years ago)
- File:
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- 1 edited
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ccr/branches/ohum/p/C0CRXNRD.m (modified) (1 diff)
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ccr/branches/ohum/p/C0CRXNRD.m
r1342 r1428 1 C0CRXNRD 2 ;;0.1;C0C;nopatch;noreleasedate;Build 2 3 4 IMPORT(PATH) 5 6 7 8 9 DELFILED(FN) 10 11 12 13 14 15 16 17 18 19 GETLINES(PATH,FILENAME) 20 21 22 23 24 25 26 READCON(PATH,INCRES) 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 EX 74 75 READNDC(PATH) 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 EX2 99 100 READSRC(PATH) 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 EX3 142 143 1 C0CRXNRD ; WV/SMH - CCR/CCD PROJECT: Routine to Read RxNorm files;11/15/08 2 ;;1.2;C0C;;May 11, 2012;Build 46 3 W "No entry from top" Q 4 IMPORT(PATH) 5 I PATH="" QUIT 6 D READSRC(PATH),READCON(PATH),READNDC(PATH) 7 QUIT 8 ; 9 DELFILED(FN) ; Delete file data; PEP procedure; only for RxNorm files 10 ; FN is Filenumber passed by Value 11 QUIT:$E(FN,1,3)'=176 ; Quit if not RxNorm files 12 D CLEAN^DILF ; Clean FM variables 13 N ROOT S ROOT=$$ROOT^DILFD(FN,"",1) ; global root 14 N ZERO S ZERO=@ROOT@(0) ; Save zero node 15 S $P(ZERO,U,3,9999)="" ; Remove entry # and last edited 16 K @ROOT ; Kill the file -- so sad! 17 S @ROOT@(0)=ZERO ; It riseth again! 18 QUIT 19 GETLINES(PATH,FILENAME) ; Get number of lines in a file 20 D OPEN^%ZISH("FILE",PATH,FILENAME,"R") 21 U IO 22 N I 23 F I=1:1 R LINE Q:$$STATUS^%ZISH 24 D CLOSE^%ZISH("FILE") 25 Q I-1 26 READCON(PATH,INCRES) ; Open and read concepts file: RXNCONSO.RRF; EP 27 ; PATH ByVal, path of RxNorm files 28 ; INCRES ByVal, include restricted sources. 1 for yes, 0 for no 29 I PATH="" QUIT 30 S INCRES=+$G(INCRES) ; if not passed, becomes zero. 31 N FILENAME S FILENAME="RXNCONSO.RRF" 32 D DELFILED(176.001) ; delete data 33 N LINES S LINES=$$GETLINES(PATH,FILENAME) 34 D OPEN^%ZISH("FILE",PATH,FILENAME,"R") 35 IF POP D EN^DDIOL("Error reading file..., Please check...") G EX 36 N C0CCOUNT 37 F C0CCOUNT=1:1 D Q:$$STATUS^%ZISH 38 . U IO 39 . N LINE R LINE 40 . IF $$STATUS^%ZISH QUIT 41 . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 42 . N RXCUI,RXAUI,SAB,TTY,CODE,STR ; Fileman fields numbers below 43 . S RXCUI=$P(LINE,"|",1) ; .01 44 . S RXAUI=$P(LINE,"|",8) ; 1 45 . S SAB=$P(LINE,"|",12) ; 2 46 . ; If the source is a restricted source, decide what to do based on what's asked. 47 . N SRCIEN S SRCIEN=$$FIND1^DIC(176.003,"","QX",SAB,"B") ; SrcIEN in RXNORM SOURCES file 48 . N RESTRIC S RESTRIC=$$GET1^DIQ(176.003,SRCIEN,14,"I") ; 14 is restriction field; values 0-4 49 . ; If RESTRIC is zero, then it's unrestricted. Everything else is restricted. 50 . ; If user didn't ask to include restricted sources, and the source is restricted, then quit 51 . I 'INCRES,RESTRIC QUIT 52 . S TTY=$P(LINE,"|",13) ; 3 53 . S CODE=$P(LINE,"|",14) ; 4 54 . S STR=$P(LINE,"|",15) ; 5 55 . ; Remove embedded "^" 56 . S STR=$TR(STR,"^") 57 . ; Convert STR into an array of 80 characters on each line 58 . N STRLINE S STRLINE=$L(STR)\80+1 59 . ; In each line, chop 80 characters off, reset STR to be the rest 60 . N J F J=1:1:STRLINE S STR(J)=$E(STR,1,80) S STR=$E(STR,81,$L(STR)) 61 . ; Now, construct the FDA array 62 . N RXNFDA 63 . S RXNFDA(176.001,"+1,",.01)=RXCUI 64 . S RXNFDA(176.001,"+1,",1)=RXAUI 65 . S RXNFDA(176.001,"+1,",2)=SAB 66 . S RXNFDA(176.001,"+1,",3)=TTY 67 . S RXNFDA(176.001,"+1,",4)=CODE 68 . N RXNIEN S RXNIEN(1)=C0CCOUNT 69 . D UPDATE^DIE("","RXNFDA","RXNIEN") 70 . I $D(^TMP("DIERR",$J)) D EN^DDIOL("ERROR") G EX 71 . ; Now, file WP field STR 72 . D WP^DIE(176.001,C0CCOUNT_",",5,,$NA(STR)) 73 EX D CLOSE^%ZISH("FILE") 74 QUIT 75 READNDC(PATH) ; Open and read NDC/RxNorm/VANDF relationship file: RXNSAT.RRF 76 I PATH="" QUIT 77 N FILENAME S FILENAME="RXNSAT.RRF" 78 D DELFILED(176.002) ; delete data 79 N LINES S LINES=$$GETLINES(PATH,FILENAME) 80 D OPEN^%ZISH("FILE",PATH,FILENAME,"R") 81 IF POP W "Error reading file..., Please check...",! G EX2 82 F C0CCOUNT=1:1 Q:$$STATUS^%ZISH D 83 . U IO 84 . N LINE R LINE 85 . IF $$STATUS^%ZISH QUIT 86 . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 87 . IF LINE'["NDC|RXNORM" QUIT 88 . ; Otherwise, we are good to go 89 . N RXCUI,NDC ; Fileman fields below 90 . S RXCUI=$P(LINE,"|",1) ; .01 91 . S NDC=$P(LINE,"|",11) ; 2 92 . ; Using classic call to update. 93 . N DIC,X,DA,DR 94 . K DO 95 . S DIC="^C0CRXN(176.002,",DIC(0)="F",X=RXCUI,DIC("DR")="2////"_NDC 96 . D FILE^DICN 97 . I Y<1 U $P W !,"THERE IS TROUBLE IN RIVER CITY",! G EX2 98 EX2 D CLOSE^%ZISH("FILE") 99 QUIT 100 READSRC(PATH) ; Open the read RxNorm Sources file: RXNSAB.RRF 101 I PATH="" QUIT 102 N FILENAME S FILENAME="RXNSAB.RRF" 103 D DELFILED(176.003) ; delete data 104 D OPEN^%ZISH("FILE",PATH,FILENAME,"R") 105 IF POP W "Error reading file..., Please check...",! G EX3 106 F I=1:1 Q:$$STATUS^%ZISH D 107 . U IO 108 . N LINE R LINE 109 . IF $$STATUS^%ZISH QUIT 110 . U $P W I,! U IO ; Write I to the screen, then go back to reading the file 111 . N VCUI,RCUI,VSAB,RSAB,SON,SF,SVER,SRL,SCIT ; Fileman fields numbers below 112 . S VCUI=$P(LINE,"|",1) ; .01 113 . S RCUI=$P(LINE,"|",2) ; 2 114 . S VSAB=$P(LINE,"|",3) ; 3 115 . S RSAB=$P(LINE,"|",4) ; 4 116 . S SON=$P(LINE,"|",5) ; 5 117 . S SF=$P(LINE,"|",6) ; 6 118 . S SVER=$P(LINE,"|",7) ; 7 119 . S SRL=$P(LINE,"|",14) ; 14 120 . S SCIT=$P(LINE,"|",25) ; 25 121 . ; Remove embedded "^" 122 . S SCIT=$TR(SCIT,"^") 123 . ; Convert SCIT into an array of 80 characters on each line 124 . ; In each line, chop 80 characters off, reset SCIT to be the rest 125 . N SCITLINE S SCITLINE=$L(SCIT)\80+1 126 . F J=1:1:SCITLINE S SCIT(J)=$E(SCIT,1,80) S SCIT=$E(SCIT,81,$L(SCIT)) 127 . ; Now, construct the FDA array 128 . N RXNFDA 129 . S RXNFDA(176.003,"+"_I_",",.01)=VCUI 130 . S RXNFDA(176.003,"+"_I_",",2)=RCUI 131 . S RXNFDA(176.003,"+"_I_",",3)=VSAB 132 . S RXNFDA(176.003,"+"_I_",",4)=RSAB 133 . S RXNFDA(176.003,"+"_I_",",5)=SON 134 . S RXNFDA(176.003,"+"_I_",",6)=SF 135 . S RXNFDA(176.003,"+"_I_",",7)=SVER 136 . S RXNFDA(176.003,"+"_I_",",14)=SRL 137 . D UPDATE^DIE("","RXNFDA") 138 . I $D(^TMP("DIERR",$J)) U $P W "ERR" G EX 139 . ; Now, file WP field SCIT 140 . D WP^DIE(176.003,I_",",25,,$NA(SCIT)) 141 EX3 D CLOSE^%ZISH("FILE") 142 Q 143
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