- Timestamp:
- Nov 14, 2013, 5:40:26 PM (12 years ago)
- Location:
- ccr/trunk/rxnorm/trunk/routines
- Files:
-
- 3 edited
-
C0CRXNAD.m (modified) (1 diff)
-
C0CRXNLK.m (modified) (23 diffs)
-
C0CRXNRD.m (modified) (8 diffs)
Legend:
- Unmodified
- Added
- Removed
-
ccr/trunk/rxnorm/trunk/routines/C0CRXNAD.m
r1618 r1630 1 C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM2 ;;1.0;RX NORM;;Apr 25, 2012;Build 99 3 ; (C) 2013 Sam Habiel4 ; Proprietary Code. Don't use if license terms aren't supplied.5 ;6 ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File7 ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.8 ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.9 ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.10 ; Output: Internal Entry Number11 ;12 ; Prelim Checks13 I '$G(RXN) S $EC=",U1," ; Required14 I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"15 ;16 N PSSZ S PSSZ=1 ; Needed for the drug file to let me in!17 ;18 ; If RXN refers to a brand drug, get the generic instead.19 I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)20 W !,"(debug) RxNorm is "_RXN,!21 ;22 ; Get first VUID for this RxNorm drug23 N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)24 Q:'VUID25 W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!26 ;27 ; IEN in 50.6828 N C0XVUID ; For Searching Compound Index29 S C0XVUID(1)=VUID30 S C0XVUID(2)=131 N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")32 Q:'F5068IEN33 W "F 50.68 IEN (debug): "_F5068IEN,!34 ;35 ; FDA Array36 N C0XFDA37 ;38 ; Name, shortened39 S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)40 ;41 ; File BarCode as a Synonym for BCMA42 I $L($G(BARCODE)) D43 . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE44 . S C0XFDA(50.1,"+2,+1,",1)="Q"45 ;46 ; Brand Names47 N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands48 I $L(BNS) N I F I=1:1:$L(BNS,U) D49 . N IENS S IENS=I+250 . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))51 . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"52 ;53 ; NDC (string)54 I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)55 ;56 ; Dispense Unit (string)57 S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")58 ;59 ; National Drug File Entry (pointer to 50.6)60 S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")61 ;62 ; VA Product Name (string)63 S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)64 ;65 ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)66 S C0XFDA(50,"+1,",22)="`"_F5068IEN67 ;68 ; DEA, SPECIAL HDLG (string)69 D ; From ^PSNMRG70 . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")71 . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)72 . S C0XFDA(50,"+1,",3)=CS73 ;74 ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)75 S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")76 ;77 ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)78 ; - Package Size (derived from NDC/UPN file)79 ; - Package Type (ditto)80 ; - CMOP ID (from $$PROD2^PSNAPIS)81 ; - National Formulary Indicator (from 50.68)82 ;83 ; Next Step is to kill Old OI if Dosage Form doesn't match84 ; Won't do that here as it's assumed any drugs that's added is new.85 ; This happens at ^PSNPSS86 ;87 ; Now add drug to drug file, as we need the IEN for the dosages call.88 N C0XERR,C0XIEN89 D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")90 S:$D(C0XERR) $EC=",U1,"91 ;92 ; Next Step: Kill off old doses and add new ones.93 D EN2^PSSUTIL(C0XIEN(1))94 ;95 ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU96 N PSIUDA,PSIUX ; Expected Input variables97 S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU98 S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU99 S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU100 ;101 ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information102 N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer103 N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name104 N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer105 N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text106 N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto107 N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto108 ;109 ; Get the (possibly new) Orderable Item Text110 N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field111 ;112 ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.113 N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))114 ;115 ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)116 I 'OI D117 . N C0XFDA,C0XERR118 . S C0XFDA(50.7,"+1,",.01)=VAG40119 . S C0XFDA(50.7,"+1,",.02)=DOSEPTR120 . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))121 . I $D(C0XERR) S $EC=",U1,"122 . S OI=OI(1) ; For ease of use...123 . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.124 . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.125 . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS126 ;127 ; Finally, add the orderable Item to the drug file.128 N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item129 D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))130 S:$D(C0XERR) $EC=",U1,"131 ;132 EX QUIT C0XIEN(1)1 C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19 5:39 PM 2 ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 3 ; (C) 2013 Sam Habiel 4 ; Proprietary Code. Don't use if license terms aren't supplied. 5 ; 6 ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File 7 ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required. 8 ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes. 9 ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters. 10 ; Output: Internal Entry Number 11 ; 12 ; Prelim Checks 13 I '$G(RXN) S $EC=",U1," ; Required 14 I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1," 15 ; 16 N PSSZ S PSSZ=1 ; Needed for the drug file to let me in! 17 ; 18 ; If RXN refers to a brand drug, get the generic instead. 19 I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN) 20 W !,"(debug) RxNorm is "_RXN,! 21 ; 22 ; Get first VUID for this RxNorm drug 23 N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN) 24 Q:'VUID 25 W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,! 26 ; 27 ; IEN in 50.68 28 N C0XVUID ; For Searching Compound Index 29 S C0XVUID(1)=VUID 30 S C0XVUID(2)=1 31 N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID") 32 Q:'F5068IEN 33 W "F 50.68 IEN (debug): "_F5068IEN,! 34 ; 35 ; FDA Array 36 N C0XFDA 37 ; 38 ; Name, shortened 39 S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40) 40 ; 41 ; File BarCode as a Synonym for BCMA 42 I $L($G(BARCODE)) D 43 . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE 44 . S C0XFDA(50.1,"+2,+1,",1)="Q" 45 ; 46 ; Brand Names 47 N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands 48 I $L(BNS) N I F I=1:1:$L(BNS,U) D 49 . N IENS S IENS=I+2 50 . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40)) 51 . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T" 52 ; 53 ; NDC (string) 54 I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11) 55 ; 56 ; Dispense Unit (string) 57 S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT") 58 ; 59 ; National Drug File Entry (pointer to 50.6) 60 S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I") 61 ; 62 ; VA Product Name (string) 63 S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70) 64 ; 65 ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68) 66 S C0XFDA(50,"+1,",22)="`"_F5068IEN 67 ; 68 ; DEA, SPECIAL HDLG (string) 69 D ; From ^PSNMRG 70 . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I") 71 . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS) 72 . S C0XFDA(50,"+1,",3)=CS 73 ; 74 ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field) 75 S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I") 76 ; 77 ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them) 78 ; - Package Size (derived from NDC/UPN file) 79 ; - Package Type (ditto) 80 ; - CMOP ID (from $$PROD2^PSNAPIS) 81 ; - National Formulary Indicator (from 50.68) 82 ; 83 ; Next Step is to kill Old OI if Dosage Form doesn't match 84 ; Won't do that here as it's assumed any drugs that's added is new. 85 ; This happens at ^PSNPSS 86 ; 87 ; Now add drug to drug file, as we need the IEN for the dosages call. 88 N C0XERR,C0XIEN 89 D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR") 90 S:$D(C0XERR) $EC=",U1," 91 ; 92 ; Next Step: Kill off old doses and add new ones. 93 D EN2^PSSUTIL(C0XIEN(1)) 94 ; 95 ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU 96 N PSIUDA,PSIUX ; Expected Input variables 97 S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU 98 S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU 99 S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU 100 ; 101 ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information 102 N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer 103 N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name 104 N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer 105 N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text 106 N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto 107 N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto 108 ; 109 ; Get the (possibly new) Orderable Item Text 110 N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field 111 ; 112 ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file. 113 N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,"")) 114 ; 115 ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN) 116 I 'OI D 117 . N C0XFDA,C0XERR 118 . S C0XFDA(50.7,"+1,",.01)=VAG40 119 . S C0XFDA(50.7,"+1,",.02)=DOSEPTR 120 . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR)) 121 . I $D(C0XERR) S $EC=",U1," 122 . S OI=OI(1) ; For ease of use... 123 . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE. 124 . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc. 125 . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS 126 ; 127 ; Finally, add the orderable Item to the drug file. 128 N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item 129 D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR)) 130 S:$D(C0XERR) $EC=",U1," 131 ; 132 EX QUIT C0XIEN(1) -
ccr/trunk/rxnorm/trunk/routines/C0CRXNLK.m
r1617 r1630 1 C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013- 04-10 7:01PM2 ;; 1.0;RX NORM;;Apr 25, 2012;Build 991 C0CRXNLK ; VEN/SMH - RxNorm Lookup Utilities ;2013-11-14 2:43 PM 2 ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 3 3 ;(c) Sam Habiel 2013 4 4 ; See accompanying license. Don't use otherwise. … … 10 10 QUIT 11 11 ; 12 EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist?12 EXIST(RXN) ; $$ Public - Does this RxNorm CUI exist? 13 13 ; Input: RxNorm CUI by value 14 14 ; Output: Extrinsic … … 22 22 Q ^(IEN) 23 23 ; 24 GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN 24 GCN2RXNT ; @TEST - Test Get RxNorm CUI using GCN 25 Q:'$D(^C0CRXN(176.001,"STC","NDDF")) 25 26 N L F L=1:1 N LN S LN=$T(GCN2RXND+L) Q:LN["<<END>>" Q:LN="" D 26 27 . N GCN S GCN=$P(LN,";",3) … … 29 30 QUIT 30 31 ; 31 GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI32 GCN2RXND ; @DATA - Data for Tests ;;GCN;EXPECTED RXNCUI 32 33 ;;16033;991632 33 34 ;;8208;310429 … … 35 36 ;;18;197604 36 37 ;;346;884173 38 ;;<<END>> 39 ; 40 ; 41 ; 42 RXN2GCN(RXNCUI) ; $$ Public - Get GCN(s) given an RxNorm Number 43 ; Input: RXNCUI by Value 44 ; Output: Caret delimited Extrinsic 45 N GCNS S GCNS="" 46 N I S I="" 47 F S I=$O(^C0CRXN(176.001,"STX","NDDF","CDC",RXNCUI,I)) Q:I="" S GCNS=GCNS_+^(I)_U ; + b/c we want the GCN w/o leading zeros 48 S GCNS=$E(GCNS,1,$L(GCNS)-1) ; remove trailing ^ 49 Q GCNS 50 ; 51 RXN2GCNT ; @TEST - Test Get GCN from RXNCUI 52 Q:'$D(^C0CRXN(176.001,"STX","NDDF")) 53 N L F L=1:1 N LN S LN=$T(RXN2GCND+L) Q:LN["<<END>>" Q:LN="" D 54 . N RXN S RXN=$P(LN,";",3) 55 . N GCN S GCN=$P(LN,";",4) 56 . D CHKEQ^XTMUNIT($$RXN2GCN(RXN),GCN,"Translation from RXCUI to GCN failed") 57 QUIT 58 ; 59 ; 60 RXN2GCND ; @DATA - Data for Tests ;;RXNORM CUI;Expected GCN; Human Readable Drug name for dear reader 61 ;;998689;5145;Acetabulol 200mg tab 62 ;;745679;5037;Albuterol Inhaler 63 ;;197320;2536;Allopurinol 300mg tab 64 ;;993691;3948^46236;Bupropion 75mg tab 65 ;;197591;3768;Diazepam 5mg tab 37 66 ;;<<END>> 38 67 ; … … 50 79 Q C0PVUID 51 80 ; 52 RXN2VUIT ; @TEST - Get VUIDs given RxNorm values81 RXN2VUIT ; @TEST - Get VUIDs given RxNorm values 53 82 N L F L=1:1 N LN S LN=$T(RXN2VUID+L) Q:LN["<<END>>" Q:LN="" D 54 83 . N RXN S RXN=$P(LN,";",3) … … 57 86 QUIT 58 87 ; 59 RXN2VUID ; @DATA - Data items for previous test88 RXN2VUID ; @DATA - Data items for previous test 60 89 ;;991632;4006455 61 90 ;;310429;4002369^4013941 … … 76 105 Q O 77 106 ; 78 VUI2VAPT ; @TEST - Get VA Product IEN from VUID107 VUI2VAPT ; @TEST - Get VA Product IEN from VUID 79 108 N L F L=1:1 N LN S LN=$T(VUI2VAPD+L) Q:LN["<<END>>" Q:LN="" D 80 109 . N VUID S VUID=$P(LN,";",3) … … 83 112 QUIT 84 113 ; 85 VUI2VAPD ; @DATA - Data for above test114 VUI2VAPD ; @DATA - Data for above test 86 115 ;;4006455;5932 87 116 ;;4002369;1784 … … 112 141 ; 113 142 ; 114 RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50.143 RXN2MEDS(RXNCUI) ; $$ Public - Convert RxNorm value to currently existing drugs in File 50. 115 144 ; Input: SCD RXNCUI 116 145 ; Output; Caret delimited extrinsic … … 123 152 . N VUID S VUID=$P(VUIDS,U,I) 124 153 . N VAPRODS S VAPRODS=$$VUI2VAP(VUID) ; Get VA Product from VUID (multiple products per VUID) 125 . I '$L(VAPRODS) S ^SAM(RXNCUI)="TELL SAM",DONE=1 QUIT; MUST EXIST. Every VUID must have a product to go with it.154 . I '$L(VAPRODS) S $ECODE=",U-NO-VA-PRODUCT-CORRUPT-NDF," ; MUST EXIST. Every VUID must have a product to go with it. 126 155 . N J F J=1:1:$L(VAPRODS,U) D Q:DONE 127 156 . . N VAPROD S VAPROD=$P(VAPRODS,U,J) … … 138 167 ; 139 168 FDI2RXNT ; @TEST - Test Get RxNorm CUI for FDB Ingredient/Base 169 Q:'$D(^C0CRXN(176.001,"STC","NDDF")) 140 170 D CHKEQ^XTMUNIT($$FDI2RXN(14739),1362160,"$$FDI2RXN failed") 141 171 QUIT … … 162 192 Q C0PIEN_"^"_C0P01 163 193 ; 164 VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient194 VIN2VAGT ; @TEST - Test Get VA Generic for VUID Ingredient 165 195 D CHKEQ^XTMUNIT(+$$VIN2VAG(4023636),2832,"$$VIN2VAG failed") 166 196 QUIT … … 202 232 QUIT RXNS 203 233 ; 204 MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug 234 VUI2GCN(VUID) ; $$ Public - Get GCNs for a given VUID (any VUID type) 235 ; Input: VUID by Value 236 ; Output: GCNs delimited by ^ 237 ; TODO: Unit Test 238 N RXNS S RXNS=$$VUI2RXN(VUID) 239 N GCNS S GCNS="" 240 N I F I=1:1:$L(RXNS,U) S GCNS=GCNS_$$RXN2GCN($P(RXNS,U,I))_U 241 S GCNS=$E(GCNS,1,$L(GCNS)-1) 242 QUIT GCNS 243 ; 244 MED2RXN(DA) ; $$ Public - Get RxNorm CUI for Drug 205 245 ; Input: DA - Medication IEN 206 246 ; Output: RXNCUIs delimited by ^ … … 212 252 Q $$VUI2RXN(VUID) 213 253 ; 214 MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name254 MED2SCDN(DA) ; $$ Public - Medication to Semantic Clinical Drug Name 215 255 ; Input: DA - Medication IEN 216 256 ; Output: The Canonical Semantic Clinical Drug name … … 239 279 ; --- 240 280 ; 241 NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC281 NDC2RXN(NDC) ; $$ Public - Get RxCUI given the NDC 242 282 ; NB: Will only work if passed NDC is in 5-4-2 format. 243 283 ; Input: NDC By Value in 5-4-2 Format … … 246 286 N IEN S IEN=$O(^C0CRXN(176.002,"ASAA","RXNORM","NDC",NDC,"")) Q ^(IEN) 247 287 ; 248 NDC2RXNT ; @TEST - Test Get RxCUI given the NDC288 NDC2RXNT ; @TEST - Test Get RxCUI given the NDC 249 289 D CHKEQ^XTMUNIT($$NDC2RXN("30142-0917-71"),198439,"$$NDC2RXN failed") 250 290 QUIT … … 252 292 ; --- 253 293 ; 254 ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug?294 ISBRAND(RXN) ; $$ Public - Is this RxCUI for a brand drug? 255 295 ; Input: RxCUI 256 296 ; Output: 0 or 1 257 297 Q ''$D(^C0CRXN(176.001,"STC","RXNORM","SBD",RXN)) 258 ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug?298 ISBRANDT ; @TEST - Test Is this RxCUI for a brand drug? 259 299 D CHKEQ^XTMUNIT($$ISBRAND(205535),1,"$$ISBRAND failed") ; Brand Prozac 260 300 D CHKEQ^XTMUNIT($$ISBRAND(310384),0,"$$ISBRAND failed") ; Generic Fluoxetine … … 263 303 ; --- 264 304 ; 265 BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1)305 BR2GEN(RXN) ; $$ Public - Convert Brand RxCUI to Generic RxCUI (many to 1) 266 306 ; Input: RxCUI of Brand 267 307 ; Output: RxCUI of Generic 268 308 Q $O(^C0CRXN(176.005,"B",RXN,"has_tradename","")) 269 BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1)309 BR2GENT ; @TEST - Test Convert Brand RxCUI to Generic RxCUI (many to 1) 270 310 D CHKEQ^XTMUNIT($$BR2GEN(205535),310384,"$$BR2GEN failed") 271 311 QUIT … … 273 313 ; --- 274 314 ; 275 GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many).315 GEN2BR(RXN) ; $$ Public - Convert Generic RxCUI to Brand RxCUIs (1 to many). 276 316 N RTN S RTN="" ; Return 277 317 N I S I="" F S I=$O(^C0CRXN(176.005,"B",RXN,"tradename_of",I)) Q:'I S RTN=RTN_I_U … … 279 319 Q RTN 280 320 ; 281 GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many).321 GEN2BRT ; @TEST - Test Convert Generic RxCUI to Brand RxCUIs (1 to many). 282 322 D CHKTF^XTMUNIT($$GEN2BR(310384)[205535,"$$GEN2BR failed") 283 323 QUIT … … 285 325 ; --- 286 326 ; 287 RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN327 RXN2BNS(RXN) ; $$ Public - Get all Brand Names associated with an RXN 288 328 N BNS S BNS="" 289 329 I $$ISBRAND(RXN) S RXN=$$BR2GEN(RXN) … … 297 337 . S BNS=BNS_$P(^C0CRXN(176.001,BNIEN,0),U,15)_U 298 338 QUIT $E(BNS,1,$L(BNS)-1) 299 RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN339 RXN2BNST ; @TEST - Test Get all Brand Names associated with an RXN 300 340 D CHKTF^XTMUNIT($$RXN2BNS(205535)["Prozac","$$RXN2BNS failed") 301 341 QUIT 342 ; 343 ; --- 344 ; 345 RXN2NDC(RXN) ; Get NDC codes for RxNorm code 346 N NDCS S NDCS="" 347 N I F I=0:0 S I=$O(^C0CRXN(176.002,"ASAR","RXNORM","NDC",RXN,I)) Q:'I S NDCS=NDCS_^(I)_"^" 348 S $E(NDCS,$L(NDCS))="" 349 QUIT NDCS 350 RXN2NDCT ; @TEST - Test Get NDC codes for RxNorm code 351 D CHKTF^XTMUNIT($$RXN2NDC(197379)["^"_16714003309,"$$RXN2NDC failed") 352 QUIT -
ccr/trunk/rxnorm/trunk/routines/C0CRXNRD.m
r1615 r1630 1 C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013- 03-06 4:32PM2 ;;2. 0;RX NORM;;May 11, 2012;Build 501 C0CRXNRD ; VEN/SMH - RxNorm Utilities: Routine to Read RxNorm files;2013-11-14 1:23 PM 2 ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8 3 3 ; (C) Sam Habiel 2013 4 4 ; See license for terms of use. 5 5 ; 6 6 W "No entry from top" Q 7 IMPORT(PATH ); PUBLIC ENTRY POINT. Rest are private7 IMPORT(PATH,RESTRICTED) ; PUBLIC ENTRY POINT. Rest are private 8 8 I PATH="" QUIT 9 S RESTRICTED=$G(RESTRICTED,0) 9 10 S U="^" 10 11 N STARTTIME S STARTTIME=$P($H,",")*24*60*60+$P($H,",",2) 11 D SAB(PATH),CONSO(PATH),SAT(PATH),STY(PATH),REL(PATH),DOC(PATH) 12 N SABS 13 D SAB(PATH,.SABS) ; Load restriction values into SAB. ; 176.006 14 D CONSO(PATH,.SABS,RESTRICTED),SAT(PATH,.SABS,RESTRICTED) ; 176.001,176.002 15 D STY(PATH),REL(PATH),DOC(PATH) ; 176.003-5 12 16 N ENDTIME S ENDTIME=$P($H,",")*24*60*60+$P($H,",",2) 13 17 W !,(ENDTIME-STARTTIME)/60_" minutes elapsed" … … 25 29 QUIT 26 30 GETLINES(PATH,FILENAME) ; Get number of lines in a file 31 N POP 27 32 D OPEN^%ZISH("FILE",PATH,FILENAME,"R") 33 Q:POP 28 34 U IO 29 35 N I,LINE … … 31 37 D CLOSE^%ZISH("FILE") 32 38 Q I-1 33 CONSO(PATH, INCRES) ; Open and read concepts file: RXNCONSO.RRF39 CONSO(PATH,SABS,RESTRICTED) ; Open and read concepts file: RXNCONSO.RRF 34 40 ; PATH ByVal, path of RxNorm files 35 ; INCRES ByVal, include restricted sources. 1 for yes, 0 for no 41 ; SABS ByRef, arrays of SABS(SAB)=restriction level 42 ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no 36 43 I PATH="" QUIT 37 S INCRES=+$G(INCRES) ; if not passed, becomes zero.38 44 N FILENAME S FILENAME="RXNCONSO.RRF" 39 45 D DELFILED(176.001) ; delete data … … 48 54 . IF $$STATUS^%ZISH QUIT 49 55 . I '(C0CCOUNT#1000) U $P W C0CCOUNT," of ",LINES," read ",! U IO ; update every 1000 56 . ; 57 . ; Deal with restriction level 58 . N SAB S SAB=$P(LINE,"|",12) 59 . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit 60 . ; 61 . ; Save data 50 62 . S ^C0CRXN(176.001,C0CCOUNT,0)=$TR(LINE,"|^","^|") 51 . ; TODO Implement Filtering:52 . ; If the source is a restricted source, decide what to do based on what's asked.53 . ; N SRCIEN S SRCIEN=$$FIND1^DIC(176.003,"","QX",SAB,"B") ; SrcIEN in RXNORM SOURCES file54 . ; N RESTRIC S RESTRIC=$$GET1^DIQ(176.003,SRCIEN,14,"I") ; 14 is restriction field; values 0-455 . ; If RESTRIC is zero, then it's unrestricted. Everything else is restricted.56 . ; If user didn't ask to include restricted sources, and the source is restricted, then quit57 . ; I 'INCRES,RESTRIC QUIT58 63 EX D CLOSE^%ZISH("FILE") 59 64 N DIK S DIK="^C0CRXN(176.001," D IXALL^DIK … … 61 66 ; 62 67 ; 63 SAT(PATH) ; Open and read Concept and Atom attributes: RXNSAT.RRF 68 SAT(PATH,SABS,RESTRICTED) ; Open and read Concept and Atom attributes: RXNSAT.RRF 69 ; PATH ByVal, path of RxNorm files 70 ; SABS ByRef, arrays of SABS(SAB)=restriction level 71 ; RESTRICTED ByVal, include restricted sources. 1 for yes, 0 for no 64 72 I PATH="" QUIT 65 73 N FILENAME S FILENAME="RXNSAT.RRF" … … 82 90 . S $P(LINE,"|",9)=RXCUI1 83 91 . ; 92 . ; Deal with restricted sources 93 . N SAB S SAB=$P(LINE,"|",10) 94 . I 'RESTRICTED,SABS(SAB) QUIT ; If not include restricted, and SABS(SAB) is not zero, quit 95 . ; 84 96 . ; Save off 85 97 . S ^C0CRXN(176.002,C0CCOUNT,0)=$TR(LINE,"|^","^|") … … 89 101 ; 90 102 ; 91 SAB(PATH ) ; Open the read RxNorm Sources file: RXNSAB.RRF103 SAB(PATH,SABS) ; Open the read RxNorm Sources file: RXNSAB.RRF 92 104 I PATH="" QUIT 93 105 N FILENAME S FILENAME="RXNSAB.RRF" … … 109 121 EX3 D CLOSE^%ZISH("FILE") 110 122 N DIK S DIK="^C0CRXN(176.003," D IXALL^DIK 123 N C0CI F C0CI=0:0 S C0CI=$O(^C0CRXN(176.003,C0CI)) Q:'C0CI D 124 . S SABS($$GET1^DIQ(176.003,C0CI,.01))=$$GET1^DIQ(176.003,C0CI,"SRL") 111 125 QUIT 112 126 STY(PATH) ; Open and read RxNorm Semantic types file: RXNSTY.RRF
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