Ignore:
Timestamp:
Nov 14, 2013, 5:40:26 PM (10 years ago)
Author:
Sam Habiel
Message:

Two routines modified: C0CRXNRD and C0CRXNLK.

C0CRXNRD (loader utility):

  • Can now import RxNorm prescribably subset
  • Will import public domain by default except if RESTRICTED is passed to IMPORT as 1 (second parameter).

C0CRXNLK (lookup utilities):

  • FDB Unit Tests don't run if FDB from RxNorm isn't loaded.
  • New API: $$RXN2GCN - Get GCNs from RXNCUI (+UT).
  • New API: $$VUI2GCN - Get VUIDs from GCN (No UT supplied).
  • New API: $$RXN2NDC - Get NDCs for a given RxNorm CUI (+UT).
File:
1 edited

Legend:

Unmodified
Added
Removed
  • ccr/trunk/rxnorm/trunk/routines/C0CRXNAD.m

    r1618 r1630  
    1 C0CRXNAD ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19  5:39 PM
    2  ;;1.0;RX NORM;;Apr 25, 2012;Build 99
    3  ; (C) 2013 Sam Habiel
    4  ; Proprietary Code. Don't use if license terms aren't supplied.
    5  ;
    6 ADDDRUG(RXN,NDC,BARCODE) ; Public Proc; Add Drug to Drug File
    7  ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
    8  ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
    9  ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
    10  ; Output: Internal Entry Number
    11  ;
    12  ; Prelim Checks
    13  I '$G(RXN) S $EC=",U1," ; Required
    14  I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
    15  ;
    16  N PSSZ S PSSZ=1    ; Needed for the drug file to let me in!
    17  ;
    18  ; If RXN refers to a brand drug, get the generic instead.
    19  I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
    20  W !,"(debug) RxNorm is "_RXN,!
    21  ;
    22  ; Get first VUID for this RxNorm drug
    23  N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
    24  Q:'VUID
    25  W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
    26  ;
    27  ; IEN in 50.68
    28  N C0XVUID ; For Searching Compound Index
    29  S C0XVUID(1)=VUID
    30  S C0XVUID(2)=1
    31  N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
    32  Q:'F5068IEN
    33  W "F 50.68 IEN (debug): "_F5068IEN,!
    34  ;
    35  ; FDA Array
    36  N C0XFDA
    37  ;
    38  ; Name, shortened
    39  S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
    40  ;
    41  ; File BarCode as a Synonym for BCMA
    42  I $L($G(BARCODE)) D
    43  . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
    44  . S C0XFDA(50.1,"+2,+1,",1)="Q"
    45  ;
    46  ; Brand Names
    47  N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
    48  I $L(BNS) N I F I=1:1:$L(BNS,U) D
    49  . N IENS S IENS=I+2
    50  . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
    51  . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
    52  ;
    53  ; NDC (string)
    54  I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
    55  ;
    56  ; Dispense Unit (string)
    57  S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
    58  ;
    59  ; National Drug File Entry (pointer to 50.6)
    60  S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
    61  ;
    62  ; VA Product Name (string)
    63  S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
    64  ;
    65  ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
    66  S C0XFDA(50,"+1,",22)="`"_F5068IEN
    67  ;
    68  ; DEA, SPECIAL HDLG (string)
    69  D  ; From ^PSNMRG
    70  . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
    71  . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
    72  . S C0XFDA(50,"+1,",3)=CS
    73  ;
    74  ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
    75  S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
    76  ;
    77  ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
    78  ; - Package Size (derived from NDC/UPN file)
    79  ; - Package Type (ditto)
    80  ; - CMOP ID (from $$PROD2^PSNAPIS)
    81  ; - National Formulary Indicator (from 50.68)
    82  ;
    83  ; Next Step is to kill Old OI if Dosage Form doesn't match
    84  ; Won't do that here as it's assumed any drugs that's added is new.
    85  ; This happens at ^PSNPSS
    86  ;
    87  ; Now add drug to drug file, as we need the IEN for the dosages call.
    88  N C0XERR,C0XIEN
    89  D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
    90  S:$D(C0XERR) $EC=",U1,"
    91  ;
    92  ; Next Step: Kill off old doses and add new ones.
    93  D EN2^PSSUTIL(C0XIEN(1))
    94  ;
    95  ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
    96  N PSIUDA,PSIUX ; Expected Input variables
    97  S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
    98  S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
    99  S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
    100  ;
    101  ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
    102  N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
    103  N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
    104  N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
    105  N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
    106  N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
    107  N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
    108  ;
    109  ; Get the (possibly new) Orderable Item Text
    110  N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
    111  ;
    112  ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
    113  N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
    114  ;
    115  ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
    116  I 'OI D
    117  . N C0XFDA,C0XERR
    118  . S C0XFDA(50.7,"+1,",.01)=VAG40
    119  . S C0XFDA(50.7,"+1,",.02)=DOSEPTR
    120  . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
    121  . I $D(C0XERR) S $EC=",U1,"
    122  . S OI=OI(1) ; For ease of use...
    123  . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
    124  . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
    125  . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
    126  ;
    127  ; Finally, add the orderable Item to the drug file.
    128  N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
    129  D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
    130  S:$D(C0XERR) $EC=",U1,"
    131  ;
    132 EX QUIT C0XIEN(1)
     1C0CRXNAD        ; VEN/SMH - Add a drug to VISTA from RxNorm;2013-04-19  5:39 PM
     2        ;;2.2;RXNORM FOR VISTA;;Nov 14, 2013;Build 8
     3        ; (C) 2013 Sam Habiel
     4        ; Proprietary Code. Don't use if license terms aren't supplied.
     5        ;
     6ADDDRUG(RXN,NDC,BARCODE)        ; Public Proc; Add Drug to Drug File
     7        ; Input: RXN - RxNorm Semantic Clinical Drug CUI by Value. Required.
     8        ; Input: NDC - Drug NDC by Value. Optional. Pass in 11 digit format without dashes.
     9        ; Input: BARCODE - Wand Barcode. Optional. Pass exactly as wand reads minus control characters.
     10        ; Output: Internal Entry Number
     11        ;
     12        ; Prelim Checks
     13        I '$G(RXN) S $EC=",U1," ; Required
     14        I $L($G(NDC)),$L(NDC)'=11 S $EC=",U1,"
     15        ;
     16        N PSSZ S PSSZ=1    ; Needed for the drug file to let me in!
     17        ;
     18        ; If RXN refers to a brand drug, get the generic instead.
     19        I $$ISBRAND^C0CRXNLK(RXN) S RXN=$$BR2GEN^C0CRXNLK(RXN)
     20        W !,"(debug) RxNorm is "_RXN,!
     21        ;
     22        ; Get first VUID for this RxNorm drug
     23        N VUID S VUID=+$$RXN2VUI^C0CRXNLK(RXN)
     24        Q:'VUID
     25        W "(debug) VUID for RxNorm CUI "_RXN_" is "_VUID,!
     26        ;
     27        ; IEN in 50.68
     28        N C0XVUID ; For Searching Compound Index
     29        S C0XVUID(1)=VUID
     30        S C0XVUID(2)=1
     31        N F5068IEN S F5068IEN=$$FIND1^DIC(50.68,"","XQ",.C0XVUID,"AMASTERVUID")
     32        Q:'F5068IEN
     33        W "F 50.68 IEN (debug): "_F5068IEN,!
     34        ;
     35        ; FDA Array
     36        N C0XFDA
     37        ;
     38        ; Name, shortened
     39        S C0XFDA(50,"+1,",.01)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,40)
     40        ;
     41        ; File BarCode as a Synonym for BCMA
     42        I $L($G(BARCODE)) D
     43        . S C0XFDA(50.1,"+2,+1,",.01)=BARCODE
     44        . S C0XFDA(50.1,"+2,+1,",1)="Q"
     45        ;
     46        ; Brand Names
     47        N BNS S BNS=$$RXN2BNS^C0CRXNLK(RXN) ; Brands
     48        I $L(BNS) N I F I=1:1:$L(BNS,U) D
     49        . N IENS S IENS=I+2
     50        . S C0XFDA(50.1,"+"_IENS_",+1,",.01)=$$UP^XLFSTR($E($P(BNS,U,I),1,40))
     51        . S C0XFDA(50.1,"+"_IENS_",+1,",1)="T"
     52        ;
     53        ; NDC (string)
     54        I $G(NDC) S C0XFDA(50,"+1,",31)=$E(NDC,1,5)_"-"_$E(NDC,6,9)_"-"_$E(NDC,10,11)
     55        ;
     56        ; Dispense Unit (string)
     57        S C0XFDA(50,"+1,",14.5)=$$GET1^DIQ(50.68,F5068IEN,"VA DISPENSE UNIT")
     58        ;
     59        ; National Drug File Entry (pointer to 50.6)
     60        S C0XFDA(50,"+1,",20)="`"_$$GET1^DIQ(50.68,F5068IEN,"VA GENERIC NAME","I")
     61        ;
     62        ; VA Product Name (string)
     63        S C0XFDA(50,"+1,",21)=$E($$GET1^DIQ(50.68,F5068IEN,.01),1,70)
     64        ;
     65        ; PSNDF VA PRODUCT NAME ENTRY (pointer to 50.68)
     66        S C0XFDA(50,"+1,",22)="`"_F5068IEN
     67        ;
     68        ; DEA, SPECIAL HDLG (string)
     69        D  ; From ^PSNMRG
     70        . N CS S CS=$$GET1^DIQ(50.68,F5068IEN,"CS FEDERAL SCHEDULE","I")
     71        . S CS=$S(CS?1(1"2n",1"3n"):+CS_"C",+CS=2!(+CS=3)&(CS'["C"):+CS_"A",1:CS)
     72        . S C0XFDA(50,"+1,",3)=CS
     73        ;
     74        ; NATIONAL DRUG CLASS (pointer to 50.605) (triggers VA Classification field)
     75        S C0XFDA(50,"+1,",25)="`"_$$GET1^DIQ(50.68,F5068IEN,"PRIMARY VA DRUG CLASS","I")
     76        ;
     77        ; Right Now, I don't file the following which ^PSNMRG does (cuz I don't need them)
     78        ; - Package Size (derived from NDC/UPN file)
     79        ; - Package Type (ditto)
     80        ; - CMOP ID (from $$PROD2^PSNAPIS)
     81        ; - National Formulary Indicator (from 50.68)
     82        ;
     83        ; Next Step is to kill Old OI if Dosage Form doesn't match
     84        ; Won't do that here as it's assumed any drugs that's added is new.
     85        ; This happens at ^PSNPSS
     86        ;
     87        ; Now add drug to drug file, as we need the IEN for the dosages call.
     88        N C0XERR,C0XIEN
     89        D UPDATE^DIE("E","C0XFDA","C0XIEN","C0XERR")
     90        S:$D(C0XERR) $EC=",U1,"
     91        ;
     92        ; Next Step: Kill off old doses and add new ones.
     93        D EN2^PSSUTIL(C0XIEN(1))
     94        ;
     95        ; Mark uses for the Drug; use the undocumented Silent call in PSSGIU
     96        N PSIUDA,PSIUX ; Expected Input variables
     97        S PSIUDA=C0XIEN(1),PSIUX="O^Outpatient Pharmacy" D ENS^PSSGIU
     98        S PSIUDA=C0XIEN(1),PSIUX="U^Unit Dose" D ENS^PSSGIU
     99        S PSIUDA=C0XIEN(1),PSIUX="X^Non-VA Med" D ENS^PSSGIU
     100        ;
     101        ; Get VA Generic text and VA Product pointer for Orderable Item creation plus dosage form information
     102        N VAGENP S VAGENP=$P(^PSDRUG(C0XIEN(1),"ND"),U) ; VA Generic Pointer
     103        N VAGEN S VAGEN=$$VAGN^PSNAPIS(VAGENP) ; VA Generic Full name
     104        N VAPRODP S VAPRODP=$P(^PSDRUG(C0XIEN(1),"ND"),U,3) ; VA Product Pointer
     105        N DOSAGE S DOSAGE=$$PSJDF^PSNAPIS(0,VAPRODP) ; IEN of dose form in 50.606 ^ Text
     106        N DOSEPTR S DOSEPTR=$P(DOSAGE,U) ; ditto
     107        N DOSEFORM S DOSEFORM=$P(DOSAGE,U,2) ;ditto
     108        ;
     109        ; Get the (possibly new) Orderable Item Text
     110        N VAG40 S VAG40=$E(VAGEN,1,40) ; Max length of .01 field
     111        ;
     112        ; See if there is an existing orderable item already. If so, populate the Pharmacy Orderable item on drug file.
     113        N OI S OI=$O(^PS(50.7,"ADF",VAG40,DOSEPTR,""))
     114        ;
     115        ; Otherwise, add a new one. (See MCHAN+12^PSSPOIMN)
     116        I 'OI D
     117        . N C0XFDA,C0XERR
     118        . S C0XFDA(50.7,"+1,",.01)=VAG40
     119        . S C0XFDA(50.7,"+1,",.02)=DOSEPTR
     120        . D UPDATE^DIE("",$NA(C0XFDA),$NA(OI),$NA(C0XERR))
     121        . I $D(C0XERR) S $EC=",U1,"
     122        . S OI=OI(1) ; For ease of use...
     123        . ; Next two statements: See FIN^PSSPOIM1 and MF^PSSDEE.
     124        . D EN^PSSPOIDT(OI) ; Update Indexes; activations, etc.
     125        . D EN2^PSSHL1(OI,"MUP") ; Send HL7 message to CPRS
     126        ;
     127        ; Finally, add the orderable Item to the drug file.
     128        N C0XFDA,C0XERR S C0XFDA(50,C0XIEN(1)_",",2.1)=OI ; Orderable Item
     129        D FILE^DIE("",$NA(C0XFDA),$NA(C0XERR))
     130        S:$D(C0XERR) $EC=",U1,"
     131        ;
     132EX      QUIT C0XIEN(1)
Note: See TracChangeset for help on using the changeset viewer.